Wall clock time and date at job start Tue Mar 31 2020 17:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47024 * 300.00306 * 3 2 1 6 6 H 1.48501 * 109.46918 * 59.99700 * 3 2 1 7 7 C 1.38956 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00013 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99422 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99599 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99883 * 0.02562 * 10 9 7 12 12 C 1.50691 * 119.99984 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47102 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99803 * 179.59669 * 13 12 10 15 15 C 1.53000 * 115.55195 * 294.62373 * 14 13 12 16 16 N 1.46501 * 109.47387 * 279.61931 * 15 14 13 17 17 C 1.34768 * 119.99995 * 175.59083 * 16 15 14 18 18 O 1.21594 * 120.00243 * 359.97438 * 17 16 15 19 19 C 1.47542 * 119.99977 * 179.72371 * 17 16 15 20 20 C 1.39703 * 120.18925 * 0.27321 * 19 17 16 21 21 C 1.37786 * 119.90548 * 179.97438 * 20 19 17 22 22 C 1.38545 * 120.30371 * 0.02562 * 21 20 19 23 23 C 1.38054 * 120.38803 * 359.97438 * 22 21 20 24 24 C 1.38705 * 120.08410 * 359.74171 * 23 22 21 25 25 O 1.35659 * 120.14998 * 180.25542 * 24 23 22 26 26 C 1.53001 * 117.50170 * 80.29780 * 14 13 12 27 27 C 1.53007 * 117.50000 * 148.95734 * 14 13 12 28 28 H 0.97002 * 119.99737 * 359.97438 * 1 2 3 29 29 H 0.96993 * 120.00364 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47110 * 60.00271 * 12 10 9 31 31 H 1.09001 * 109.47194 * 300.00216 * 12 10 9 32 32 H 1.00897 * 110.99876 * 303.54601 * 13 12 10 33 33 H 1.08998 * 109.47144 * 159.61570 * 15 14 13 34 34 H 1.08996 * 109.46753 * 39.62001 * 15 14 13 35 35 H 0.96998 * 119.99590 * 355.58497 * 16 15 14 36 36 H 1.08001 * 120.04834 * 359.97438 * 20 19 17 37 37 H 1.08003 * 119.84681 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.80602 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.95553 * 180.02562 * 23 22 21 40 40 H 0.96694 * 113.99954 * 270.25230 * 25 24 23 41 41 H 1.08997 * 117.50314 * 214.99952 * 26 14 13 42 42 H 1.09000 * 117.49460 * 0.02562 * 26 14 13 43 43 H 1.09005 * 117.49191 * 359.97357 * 27 14 13 44 44 H 1.08999 * 117.50157 * 144.96984 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2103 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 1.4982 -7.2708 0.0119 15 6 0.6847 -7.5704 1.2726 16 7 1.5796 -8.0501 2.3287 17 6 1.0958 -8.2933 3.5628 18 8 -0.0832 -8.1142 3.7999 19 6 1.9958 -8.7822 4.6248 20 6 3.3513 -8.9890 4.3569 21 6 4.1866 -9.4452 5.3532 22 6 3.6886 -9.7008 6.6205 23 6 2.3513 -9.5008 6.8988 24 6 1.4971 -9.0363 5.9096 25 8 0.1838 -8.8343 6.1830 26 6 0.9531 -7.7895 -1.3204 27 6 2.1798 -8.4497 -0.6858 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3907 -0.0002 30 1 0.6169 -4.9209 -0.8887 31 1 0.6175 -4.9205 0.8913 32 1 2.8291 -5.9164 -0.7835 33 1 -0.0594 -8.3355 1.0515 34 1 0.1835 -6.6617 1.6060 35 1 2.5202 -8.1927 2.1396 36 1 3.7438 -8.7915 3.3703 37 1 5.2342 -9.6051 5.1449 38 1 4.3505 -10.0586 7.3953 39 1 1.9706 -9.7018 7.8893 40 1 -0.3737 -9.6091 6.0284 41 1 0.0151 -8.3441 -1.2987 42 1 1.1146 -7.1728 -2.2045 43 1 3.1477 -8.2669 -1.1527 44 1 2.0490 -9.4385 -0.2463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670746069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:45 Heat of formation + Delta-G solvation = -54.351911 kcal Electronic energy + Delta-G solvation = -27693.429631 eV Core-core repulsion = 23611.930500 eV Total energy + Delta-G solvation = -4081.499131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61244 -39.32900 -38.36965 -37.69258 -36.89364 -34.24771 -33.96726 -32.62236 -31.61138 -31.18028 -30.06600 -27.29162 -26.53809 -24.07969 -23.93398 -22.74664 -22.53051 -20.54659 -19.93170 -19.24682 -18.63394 -17.88964 -17.70277 -16.56030 -16.38061 -15.96648 -15.61123 -15.39248 -15.20340 -14.88862 -14.81507 -14.48524 -14.25486 -14.07711 -13.96829 -13.44953 -13.25211 -12.88479 -12.53603 -12.52225 -12.40549 -12.16786 -11.98124 -11.72689 -11.65118 -11.47752 -11.11175 -10.95344 -10.85819 -10.34599 -10.32618 -10.20968 -9.81060 -9.51715 -9.38592 -9.09275 -8.91653 -8.44738 -8.09805 -7.95903 -6.41061 -3.82025 0.54272 0.94207 2.74019 2.95472 3.17011 3.27577 3.34622 3.51892 3.63188 3.89424 3.96378 4.05009 4.25318 4.43793 4.49195 4.51020 4.63837 4.68197 4.80585 5.01583 5.05259 5.11125 5.25774 5.38251 5.44712 5.49525 5.53573 5.54932 5.70188 5.74398 5.84576 5.87884 5.92882 5.98241 6.01399 6.07494 6.25713 6.36120 6.40777 7.10873 7.45744 7.50135 7.54388 7.55969 8.06351 8.18979 8.60989 9.18029 9.54312 10.05136 10.76667 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.002584 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.252716 B =10833.051467 C =11901.583254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.585 6.585 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.037 3.963 15 C 0.168 3.832 16 N -0.713 5.713 17 C 0.556 3.444 18 O -0.526 6.526 19 C -0.163 4.163 20 C -0.068 4.068 21 C -0.138 4.138 22 C -0.080 4.080 23 C -0.159 4.159 24 C 0.167 3.833 25 O -0.477 6.477 26 C -0.205 4.205 27 C -0.167 4.167 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.354 0.646 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.403 0.597 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.394 0.606 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -24.377 6.670 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.257 5.257 14 C -0.056 4.056 15 C 0.044 3.956 16 N -0.365 5.365 17 C 0.343 3.657 18 O -0.404 6.404 19 C -0.167 4.167 20 C -0.087 4.087 21 C -0.156 4.156 22 C -0.098 4.098 23 C -0.178 4.178 24 C 0.121 3.879 25 O -0.287 6.287 26 C -0.246 4.246 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.238 0.762 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.252 0.748 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.979 -23.449 7.657 24.846 hybrid contribution -0.220 0.431 -1.185 1.280 sum 2.759 -23.018 6.472 24.069 Atomic orbital electron populations 1.69624 1.05949 1.28097 1.50476 1.25278 0.95639 0.99757 0.97286 0.85799 0.79695 0.81121 0.77718 1.19212 1.20766 1.20699 1.19747 0.93374 0.82184 1.47578 0.87866 1.41862 1.09251 1.04598 1.64133 1.19747 0.88338 0.84669 0.84624 1.90521 1.13705 1.87077 1.55632 1.21691 0.94452 0.90513 1.01584 1.59857 1.17535 0.97992 1.50338 1.21874 1.00430 0.91149 0.92191 1.20712 0.90715 0.99938 0.84200 1.45767 1.13241 1.67591 1.09922 1.18031 0.87602 0.78113 0.81969 1.90812 1.16378 1.51773 1.81390 1.20453 0.94898 1.06970 0.94352 1.21309 0.91789 0.95758 0.99861 1.21128 1.00283 1.01041 0.93180 1.21235 0.94780 0.96905 0.96873 1.21469 0.94245 1.02133 0.99909 1.18520 0.85324 0.93827 0.90241 1.84779 1.14747 1.40654 1.88562 1.23642 0.98356 1.04911 0.97652 1.23164 0.97533 0.96525 1.03262 0.91881 0.77415 0.93420 0.89419 0.82552 0.91012 0.90188 0.76152 0.85032 0.85055 0.85172 0.84775 0.74835 0.88381 0.88362 0.88135 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 10 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 11 O -0.58 -15.84 15.79 5.54 0.09 -15.76 16 12 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 13 N -0.63 -9.67 6.29 -101.22 -0.64 -10.30 16 14 C 0.04 0.43 1.81 -131.60 -0.24 0.19 16 15 C 0.17 2.09 5.68 -4.04 -0.02 2.06 16 16 N -0.71 -8.52 5.47 -61.35 -0.34 -8.86 16 17 C 0.56 7.71 7.76 -12.47 -0.10 7.61 16 18 O -0.53 -8.99 15.16 -16.59 -0.25 -9.24 16 19 C -0.16 -1.91 5.89 -104.84 -0.62 -2.53 16 20 C -0.07 -0.62 9.53 -39.20 -0.37 -1.00 16 21 C -0.14 -1.05 10.02 -39.63 -0.40 -1.45 16 22 C -0.08 -0.58 10.03 -39.54 -0.40 -0.98 16 23 C -0.16 -1.38 9.98 -39.48 -0.39 -1.78 16 24 C 0.17 1.89 6.72 -38.70 -0.26 1.63 16 25 O -0.48 -5.71 11.58 -40.55 -0.47 -6.18 16 26 C -0.21 -2.02 10.07 -26.69 -0.27 -2.29 16 27 C -0.17 -1.51 9.89 -26.69 -0.26 -1.78 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.53 6.62 -51.93 -0.34 1.19 16 32 H 0.35 5.57 8.32 -39.29 -0.33 5.24 16 33 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 34 H 0.08 1.18 6.52 -51.93 -0.34 0.85 16 35 H 0.40 4.09 6.44 -40.82 -0.26 3.83 16 36 H 0.13 0.97 6.40 -52.49 -0.34 0.63 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.39 3.02 9.06 45.56 0.41 3.43 16 41 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -35.53 379.37 -8.75 -44.28 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -4.82 Total: 19.88 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.69 Total: 2.86 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.31 Total: -57.84 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.63 Total: -31.17 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.53 -8.75 -44.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.073 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds