Wall clock time and date at job start Tue Mar 31 2020 17:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99853 * 2 1 4 4 C 1.53000 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47153 * 64.99996 * 4 3 2 6 6 C 1.46497 * 120.00005 * 269.99753 * 5 4 3 7 7 C 1.50693 * 109.47452 * 272.18936 * 6 5 4 8 8 H 1.08008 * 119.99738 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00029 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99923 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47444 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47275 * 120.00120 * 11 9 7 14 14 H 1.48504 * 109.47408 * 239.99706 * 11 9 7 15 15 C 1.34773 * 119.99875 * 90.00238 * 5 4 3 16 16 O 1.21534 * 120.00205 * 4.55533 * 15 5 4 17 17 C 1.47999 * 120.00024 * 184.56334 * 15 5 4 18 18 C 1.39478 * 121.10534 * 301.68220 * 17 15 5 19 19 C 1.38552 * 119.20561 * 180.23883 * 18 17 15 20 20 C 1.50704 * 119.17214 * 179.72794 * 19 18 17 21 21 N 1.31593 * 121.65483 * 359.45289 * 19 18 17 22 22 C 1.32412 * 122.02626 * 0.27238 * 21 19 18 23 23 O 1.34842 * 133.09963 * 180.02562 * 22 21 19 24 24 N 1.41328 * 109.42224 * 179.97438 * 23 22 21 25 25 C 1.29810 * 109.73369 * 0.02562 * 24 23 22 26 26 C 1.50701 * 126.33301 * 179.97438 * 25 24 23 27 27 C 1.40557 * 120.04467 * 0.02562 * 22 21 19 28 28 H 1.08999 * 109.46672 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47094 * 299.99995 * 1 2 3 30 30 H 1.08996 * 109.47024 * 59.99834 * 1 2 3 31 31 H 1.08999 * 109.46839 * 59.99991 * 3 2 1 32 32 H 1.09001 * 109.46754 * 300.00363 * 3 2 1 33 33 H 1.08998 * 109.46879 * 305.00256 * 4 3 2 34 34 H 1.09003 * 109.46969 * 185.00363 * 4 3 2 35 35 H 1.09006 * 109.46958 * 32.19091 * 6 5 4 36 36 H 1.09000 * 109.47032 * 152.18739 * 6 5 4 37 37 H 0.97005 * 119.99969 * 179.97438 * 10 9 7 38 38 H 1.08005 * 120.39697 * 359.97438 * 18 17 15 39 39 H 1.08995 * 109.46964 * 269.72665 * 20 19 18 40 40 H 1.09001 * 109.46465 * 29.72881 * 20 19 18 41 41 H 1.08996 * 109.46596 * 149.72913 * 20 19 18 42 42 H 1.08995 * 109.47484 * 264.72574 * 26 25 24 43 43 H 1.08998 * 109.47012 * 24.73223 * 26 25 24 44 44 H 1.09005 * 109.47058 * 144.72504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1053 -0.8920 -1.3428 7 6 5.4840 -1.3024 -0.8937 8 1 6.1927 -0.5532 -0.5728 9 6 5.8406 -2.6342 -0.8924 10 7 4.9775 -3.5465 -1.2826 11 14 7.5494 -3.1430 -0.3350 12 1 8.3233 -1.9364 0.0530 13 1 7.4384 -4.0554 0.8315 14 1 8.2448 -3.8418 -1.4455 15 6 4.2616 1.3338 -2.3218 16 8 4.2344 2.5449 -2.2236 17 6 4.6084 0.7039 -3.6153 18 6 5.6902 -0.1698 -3.7242 19 6 5.9826 -0.7335 -4.9556 20 6 7.1553 -1.6726 -5.0738 21 7 5.2588 -0.4737 -6.0235 22 6 4.2167 0.3423 -5.9840 23 8 3.3373 0.7595 -6.9171 24 7 2.4073 1.6435 -6.3246 25 6 2.6807 1.7867 -5.0637 26 6 1.9287 2.6442 -4.0788 27 6 3.8536 0.9621 -4.7758 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1766 0.0890 35 1 3.3593 -1.3633 -0.7028 36 1 3.9503 -1.2074 -2.3746 37 1 5.2286 -4.4835 -1.2820 38 1 6.2952 -0.4008 -2.8599 39 1 8.0513 -1.1050 -5.3249 40 1 7.3053 -2.1875 -4.1248 41 1 6.9573 -2.4043 -5.8570 42 1 2.4172 3.6150 -3.9950 43 1 0.9042 2.7817 -4.4248 44 1 1.9205 2.1562 -3.1041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103213784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:54 Heat of formation + Delta-G solvation = 0.084536 kcal Electronic energy + Delta-G solvation = -30224.740293 eV Core-core repulsion = 26145.601703 eV Total energy + Delta-G solvation = -4079.138590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80318 -39.63259 -38.45961 -37.50340 -35.19637 -34.58668 -32.83961 -32.28918 -31.68810 -29.79203 -28.70432 -27.34310 -27.26452 -26.14963 -24.38774 -23.09914 -22.91184 -22.00196 -20.61634 -18.69789 -17.83463 -17.12585 -16.88879 -16.66217 -16.17325 -16.05971 -15.94732 -15.34309 -14.82497 -14.69882 -14.39104 -13.87694 -13.81289 -13.57298 -13.36001 -13.28817 -13.13941 -12.76754 -12.52657 -12.41199 -12.09842 -11.97826 -11.90045 -11.84020 -11.63559 -11.53533 -11.17163 -11.07500 -11.00003 -10.85355 -10.68184 -10.32821 -9.93359 -9.82977 -9.50495 -9.24511 -9.06195 -8.67519 -8.49053 -7.96130 -6.28246 -4.36795 0.52069 1.31496 2.08654 2.30884 2.98438 3.12031 3.23293 3.24958 3.47631 3.84506 3.90336 4.02501 4.21202 4.24689 4.67047 4.80092 4.90604 5.04213 5.19760 5.24699 5.30341 5.40532 5.44702 5.50902 5.53107 5.56085 5.59034 5.65132 5.76942 5.78208 5.82600 5.89362 6.06867 6.09310 6.18446 6.22482 6.35663 6.59520 6.73662 7.14729 7.25568 7.34107 7.38618 7.65006 7.91918 7.93278 8.06034 8.52514 8.73543 9.29197 10.77950 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.006714 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.663026 B = 4169.330682 C = 6513.642083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.120 3.880 5 N -0.572 5.572 6 C 0.234 3.766 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.888 3.112 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.279 1.279 15 C 0.555 3.445 16 O -0.557 6.557 17 C 0.016 3.984 18 C -0.141 4.141 19 C 0.200 3.800 20 C -0.105 4.105 21 N -0.480 5.480 22 C 0.286 3.714 23 O -0.088 6.088 24 N -0.290 5.290 25 C 0.155 3.845 26 C -0.082 4.082 27 C -0.225 4.225 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.266 0.734 38 H 0.179 0.821 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 6.884 0.099 7.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.031 4.031 4 C -0.004 4.004 5 N -0.301 5.301 6 C 0.114 3.886 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.516 5.516 11 Si 0.714 3.286 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.205 1.205 15 C 0.342 3.658 16 O -0.438 6.438 17 C 0.003 3.997 18 C -0.162 4.162 19 C 0.058 3.942 20 C -0.163 4.163 21 N -0.202 5.202 22 C 0.103 3.897 23 O -0.092 6.092 24 N -0.038 5.038 25 C -0.025 4.025 26 C -0.139 4.139 27 C -0.231 4.231 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.196 0.804 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.987 7.036 -1.754 8.275 hybrid contribution 0.808 -0.217 1.633 1.835 sum -3.179 6.819 -0.121 7.524 Atomic orbital electron populations 1.22697 0.81972 1.02562 0.99228 1.88073 1.18811 1.27215 1.95205 1.23037 0.95030 0.85155 0.99903 1.21441 0.91235 0.99975 0.87732 1.48167 1.62045 1.10326 1.09558 1.19647 0.97931 0.72119 0.98885 1.21474 0.98407 0.92563 1.45910 0.91817 1.24913 0.97397 0.96278 0.94768 1.69943 1.34601 1.01414 1.45602 0.86602 0.84091 0.78977 0.78881 1.19465 1.20743 1.20471 1.18059 0.77706 0.86362 0.83708 1.90713 1.54788 1.13404 1.84865 1.19800 0.93755 0.93653 0.92487 1.22728 0.98434 0.94905 1.00099 1.21344 0.93458 0.92759 0.86609 1.20850 0.93160 0.97456 1.04802 1.66287 1.04836 1.16061 1.32990 1.20169 0.90564 0.92291 0.86678 1.89168 1.35460 1.54724 1.29849 1.79953 1.07451 1.07788 1.08598 1.24390 0.92060 0.92910 0.93155 1.20498 0.98965 0.98737 0.95726 1.21116 1.00505 1.05550 0.95959 0.89788 0.94566 0.94616 0.92799 0.93531 0.88810 0.88942 0.92802 0.94735 0.92383 0.80383 0.89769 0.88899 0.89969 0.88087 0.89890 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.10 9.49 -35.23 -0.33 -6.43 16 3 C 0.05 0.66 6.28 37.16 0.23 0.90 16 4 C 0.12 1.94 5.86 -4.04 -0.02 1.92 16 5 N -0.57 -11.04 2.42 -176.12 -0.43 -11.46 16 6 C 0.23 5.21 4.54 -5.20 -0.02 5.19 16 7 C -0.55 -12.69 6.95 -34.44 -0.24 -12.93 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.88 -22.59 13.29 55.43 0.74 -21.85 16 11 Si 0.89 18.57 29.54 -169.99 -5.02 13.55 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 C 0.56 10.79 5.95 -12.26 -0.07 10.72 16 16 O -0.56 -11.00 15.34 5.34 0.08 -10.92 16 17 C 0.02 0.31 4.58 -104.46 -0.48 -0.17 16 18 C -0.14 -2.69 7.59 -39.00 -0.30 -2.98 16 19 C 0.20 3.57 6.78 -82.58 -0.56 3.01 16 20 C -0.11 -1.49 10.15 36.01 0.37 -1.13 16 21 N -0.48 -9.21 10.25 -9.24 -0.09 -9.31 16 22 C 0.29 5.67 8.64 -16.43 -0.14 5.53 16 23 O -0.09 -1.72 12.06 7.63 0.09 -1.63 16 24 N -0.29 -5.25 12.81 34.84 0.45 -4.80 16 25 C 0.16 2.68 7.46 -80.23 -0.60 2.08 16 26 C -0.08 -1.11 9.20 36.01 0.33 -0.78 16 27 C -0.22 -4.34 6.20 -104.83 -0.65 -4.99 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.66 7.57 -51.93 -0.39 0.27 16 33 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 34 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 35 H 0.05 1.32 7.08 -51.93 -0.37 0.95 16 36 H 0.03 0.84 6.08 -51.93 -0.32 0.53 16 37 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.18 3.46 5.75 -52.48 -0.30 3.16 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.27 6.22 -51.93 -0.32 0.94 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -28.55 370.61 -5.92 -34.47 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.85 Total: 3.32 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.14 Total: 9.48 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.66 Total: -47.43 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.16 Total: -18.98 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.55 -5.92 -34.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103213784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.557 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds