Wall clock time and date at job start Tue Mar 31 2020 17:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99853 * 2 1 4 4 C 1.53000 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47153 * 64.99996 * 4 3 2 6 6 C 1.46497 * 120.00005 * 269.99753 * 5 4 3 7 7 C 1.50693 * 109.47452 * 272.18936 * 6 5 4 8 8 H 1.08008 * 119.99738 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00029 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99923 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47444 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47275 * 120.00120 * 11 9 7 14 14 H 1.48504 * 109.47408 * 239.99706 * 11 9 7 15 15 C 1.34773 * 119.99875 * 90.00238 * 5 4 3 16 16 O 1.21534 * 120.00205 * 4.55533 * 15 5 4 17 17 C 1.47999 * 120.00024 * 184.56334 * 15 5 4 18 18 C 1.39478 * 121.10534 * 301.68220 * 17 15 5 19 19 C 1.38552 * 119.20561 * 180.23883 * 18 17 15 20 20 C 1.50704 * 119.17214 * 179.72794 * 19 18 17 21 21 N 1.31593 * 121.65483 * 359.45289 * 19 18 17 22 22 C 1.32412 * 122.02626 * 0.27238 * 21 19 18 23 23 O 1.34842 * 133.09963 * 180.02562 * 22 21 19 24 24 N 1.41328 * 109.42224 * 179.97438 * 23 22 21 25 25 C 1.29810 * 109.73369 * 0.02562 * 24 23 22 26 26 C 1.50701 * 126.33301 * 179.97438 * 25 24 23 27 27 C 1.40557 * 120.04467 * 0.02562 * 22 21 19 28 28 H 1.08999 * 109.46672 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47094 * 299.99995 * 1 2 3 30 30 H 1.08996 * 109.47024 * 59.99834 * 1 2 3 31 31 H 1.08999 * 109.46839 * 59.99991 * 3 2 1 32 32 H 1.09001 * 109.46754 * 300.00363 * 3 2 1 33 33 H 1.08998 * 109.46879 * 305.00256 * 4 3 2 34 34 H 1.09003 * 109.46969 * 185.00363 * 4 3 2 35 35 H 1.09006 * 109.46958 * 32.19091 * 6 5 4 36 36 H 1.09000 * 109.47032 * 152.18739 * 6 5 4 37 37 H 0.97005 * 119.99969 * 179.97438 * 10 9 7 38 38 H 1.08005 * 120.39697 * 359.97438 * 18 17 15 39 39 H 1.08995 * 109.46964 * 269.72665 * 20 19 18 40 40 H 1.09001 * 109.46465 * 29.72881 * 20 19 18 41 41 H 1.08996 * 109.46596 * 149.72913 * 20 19 18 42 42 H 1.08995 * 109.47484 * 264.72574 * 26 25 24 43 43 H 1.08998 * 109.47012 * 24.73223 * 26 25 24 44 44 H 1.09005 * 109.47058 * 144.72504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1053 -0.8920 -1.3428 7 6 5.4840 -1.3024 -0.8937 8 1 6.1927 -0.5532 -0.5728 9 6 5.8406 -2.6342 -0.8924 10 7 4.9775 -3.5465 -1.2826 11 14 7.5494 -3.1430 -0.3350 12 1 8.3233 -1.9364 0.0530 13 1 7.4384 -4.0554 0.8315 14 1 8.2448 -3.8418 -1.4455 15 6 4.2616 1.3338 -2.3218 16 8 4.2344 2.5449 -2.2236 17 6 4.6084 0.7039 -3.6153 18 6 5.6902 -0.1698 -3.7242 19 6 5.9826 -0.7335 -4.9556 20 6 7.1553 -1.6726 -5.0738 21 7 5.2588 -0.4737 -6.0235 22 6 4.2167 0.3423 -5.9840 23 8 3.3373 0.7595 -6.9171 24 7 2.4073 1.6435 -6.3246 25 6 2.6807 1.7867 -5.0637 26 6 1.9287 2.6442 -4.0788 27 6 3.8536 0.9621 -4.7758 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1766 0.0890 35 1 3.3593 -1.3633 -0.7028 36 1 3.9503 -1.2074 -2.3746 37 1 5.2286 -4.4835 -1.2820 38 1 6.2952 -0.4008 -2.8599 39 1 8.0513 -1.1050 -5.3249 40 1 7.3053 -2.1875 -4.1248 41 1 6.9573 -2.4043 -5.8570 42 1 2.4172 3.6150 -3.9950 43 1 0.9042 2.7817 -4.4248 44 1 1.9205 2.1562 -3.1041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103213784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:53 Heat of formation + Delta-G solvation = -18.559216 kcal Electronic energy + Delta-G solvation = -30225.548747 eV Core-core repulsion = 26145.601703 eV Total energy + Delta-G solvation = -4079.947044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.25076 -41.13558 -39.88876 -38.70266 -36.76643 -35.99080 -34.59215 -33.72681 -33.07838 -31.15721 -29.92313 -29.00612 -28.63273 -27.23412 -25.82428 -24.83774 -24.32370 -23.34081 -21.99405 -20.17185 -19.29446 -18.69000 -18.44052 -18.24794 -17.63188 -17.42491 -17.18022 -16.71976 -16.40583 -15.97894 -15.83099 -15.24193 -15.13899 -14.98609 -14.70420 -14.53596 -14.46490 -14.28346 -13.87576 -13.81932 -13.50066 -13.29512 -13.17626 -13.12139 -13.04638 -12.75843 -12.69011 -12.60219 -12.53853 -12.19870 -12.09608 -11.90653 -11.63157 -11.43442 -10.76493 -10.62251 -10.56821 -10.45561 -9.96821 -9.55062 -8.13784 -6.28630 -0.92320 -0.19619 0.68790 0.85658 1.44831 1.46676 1.53215 1.61122 1.99104 2.36778 2.46390 2.53973 2.86334 2.95493 3.16518 3.19084 3.37577 3.50224 3.84527 4.05781 4.14898 4.19343 4.24768 4.35723 4.41571 4.46434 4.53273 4.54374 4.57531 4.62848 4.70365 4.74690 4.85423 4.86004 4.88104 4.96862 4.99441 5.08955 5.31311 5.34698 5.63654 5.80077 5.81174 6.08685 6.28091 6.44368 6.45786 6.81016 7.04957 7.41884 8.92386 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.006714 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.663026 B = 4169.330682 C = 6513.642083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.051 3.949 4 C 0.113 3.887 5 N -0.573 5.573 6 C 0.257 3.743 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.033 3.967 10 N -0.914 5.914 11 Si 0.945 3.055 12 H -0.264 1.264 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.559 3.441 16 O -0.559 6.559 17 C 0.002 3.998 18 C -0.150 4.150 19 C 0.201 3.799 20 C -0.103 4.103 21 N -0.490 5.490 22 C 0.273 3.727 23 O -0.105 6.105 24 N -0.293 5.293 25 C 0.161 3.839 26 C -0.078 4.078 27 C -0.240 4.240 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.029 0.971 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.173 0.827 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 7.836 0.737 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.027 4.027 4 C -0.009 4.009 5 N -0.302 5.302 6 C 0.136 3.864 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.169 4.169 10 N -0.552 5.552 11 Si 0.770 3.230 12 H -0.188 1.188 13 H -0.215 1.215 14 H -0.194 1.194 15 C 0.345 3.655 16 O -0.441 6.441 17 C -0.010 4.010 18 C -0.170 4.170 19 C 0.059 3.941 20 C -0.160 4.160 21 N -0.212 5.212 22 C 0.090 3.910 23 O -0.107 6.107 24 N -0.044 5.044 25 C -0.019 4.019 26 C -0.135 4.135 27 C -0.247 4.247 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.191 0.809 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.646 8.006 -1.116 8.867 hybrid contribution 0.660 -0.487 1.467 1.681 sum -2.985 7.519 0.352 8.098 Atomic orbital electron populations 1.22860 0.80057 1.03149 1.00784 1.88021 1.21072 1.28479 1.95517 1.23027 0.93298 0.84818 1.01519 1.21674 0.93107 1.00095 0.86023 1.48105 1.62205 1.09155 1.10713 1.19140 0.96825 0.73758 0.96659 1.21599 0.98629 0.92617 1.45227 0.91838 1.25552 1.00410 0.96242 0.94680 1.70055 1.36460 1.01679 1.47014 0.85701 0.80372 0.78575 0.78320 1.18762 1.21475 1.19423 1.17995 0.77567 0.86279 0.83631 1.90697 1.55114 1.13307 1.84943 1.19957 0.94170 0.94117 0.92774 1.22755 0.98503 0.95271 1.00463 1.21912 0.93859 0.92466 0.85853 1.20976 0.92768 0.97220 1.05006 1.66388 1.05024 1.16294 1.33467 1.20416 0.90885 0.92627 0.87067 1.89133 1.35822 1.55276 1.30456 1.79942 1.07358 1.08062 1.08995 1.24923 0.91322 0.92377 0.93327 1.20652 1.00305 0.98227 0.94331 1.21334 1.01401 1.06251 0.95697 0.89826 0.92194 0.93766 0.89511 0.93366 0.89441 0.87635 0.95300 0.97110 0.92432 0.80932 0.86681 0.89196 0.89029 0.86883 0.86914 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.41 -13.13 9.49 -148.98 -1.41 -14.55 16 3 C 0.05 1.36 6.28 71.98 0.45 1.81 16 4 C 0.11 3.57 5.86 86.38 0.51 4.08 16 5 N -0.57 -22.06 2.42 -829.41 -2.01 -24.07 16 6 C 0.26 11.67 4.54 85.63 0.39 12.06 16 7 C -0.54 -25.32 6.95 25.60 0.18 -25.15 16 8 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.03 1.57 5.46 84.66 0.46 2.03 16 10 N -0.91 -47.50 13.29 21.45 0.28 -47.22 16 11 Si 0.95 37.56 29.54 68.60 2.03 39.59 16 12 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 13 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 15 C 0.56 21.53 5.95 86.83 0.52 22.04 16 16 O -0.56 -21.48 15.34 -3.82 -0.06 -21.54 16 17 C 0.00 0.09 4.58 -19.76 -0.09 0.00 16 18 C -0.15 -5.71 7.59 22.64 0.17 -5.54 16 19 C 0.20 7.12 6.78 42.67 0.29 7.41 16 20 C -0.10 -2.76 10.15 71.24 0.72 -2.04 16 21 N -0.49 -18.81 10.25 -296.39 -3.04 -21.85 16 22 C 0.27 10.91 8.64 85.17 0.74 11.65 16 23 O -0.10 -4.14 12.06 29.71 0.36 -3.79 16 24 N -0.29 -10.48 12.81 -43.67 -0.56 -11.04 16 25 C 0.16 5.45 7.46 44.94 0.34 5.78 16 26 C -0.08 -1.98 9.20 71.24 0.66 -1.32 16 27 C -0.24 -9.30 6.20 -20.00 -0.12 -9.43 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.28 7.57 -2.39 -0.02 1.26 16 33 H 0.09 2.85 8.07 -2.39 -0.02 2.83 16 34 H 0.11 3.03 7.36 -2.39 -0.02 3.01 16 35 H 0.03 1.46 7.08 -2.38 -0.02 1.44 16 36 H 0.01 0.55 6.08 -2.39 -0.01 0.53 16 37 H 0.27 13.22 8.31 -92.70 -0.77 12.44 16 38 H 0.17 6.74 5.75 -2.91 -0.02 6.72 16 39 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.09 2.50 8.07 -2.39 -0.02 2.48 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.21 6.22 -2.38 -0.01 2.19 16 Total: -1.00 -61.40 370.61 3.07 -58.33 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.04 Total: 20.86 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 6.45 Total: 25.27 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.32 Total: -104.18 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.11 Total: -39.87 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -61.40 3.07 -58.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103213784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.769 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds