Wall clock time and date at job start Tue Mar 31 2020 18:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.28984 * 2 1 4 4 C 1.34772 * 120.00331 * 59.29599 * 3 2 1 5 5 O 1.21286 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00236 * 180.02562 * 4 3 2 7 7 F 1.39895 * 109.47298 * 180.02562 * 6 4 3 8 8 F 1.39905 * 109.46905 * 300.00109 * 6 4 3 9 9 F 1.39897 * 109.46964 * 60.00315 * 6 4 3 10 10 C 1.54262 * 110.32580 * 122.12790 * 2 1 3 11 11 C 1.54377 * 105.06436 * 118.89363 * 10 2 1 12 12 N 1.48562 * 104.59427 * 23.85274 * 11 10 2 13 13 C 1.46897 * 110.99992 * 200.95790 * 12 11 10 14 14 C 1.52996 * 109.47172 * 290.12891 * 13 12 11 15 15 H 1.08999 * 109.47282 * 54.99966 * 14 13 12 16 16 C 1.47202 * 109.47075 * 294.99607 * 14 13 12 17 17 N 5.73389 * 158.45878 * 223.01756 * 2 1 3 18 18 C 1.53004 * 109.47075 * 175.00018 * 14 13 12 19 19 C 1.50698 * 109.47391 * 184.99650 * 18 14 13 20 20 H 1.08003 * 119.99929 * 0.02562 * 19 18 14 21 21 C 1.37876 * 120.00308 * 179.97438 * 19 18 14 22 22 N 1.31513 * 119.99916 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99768 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47069 * 90.00082 * 23 21 19 25 25 H 1.48504 * 109.47304 * 210.00284 * 23 21 19 26 26 H 1.48503 * 109.47578 * 329.99870 * 23 21 19 27 27 C 1.48720 * 104.28621 * 320.57377 * 12 11 10 28 28 H 1.09002 * 109.47153 * 60.70198 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.70389 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.70371 * 1 2 3 31 31 H 0.97002 * 119.99848 * 239.30064 * 3 2 1 32 32 H 1.09002 * 110.32390 * 237.79288 * 10 2 1 33 33 H 1.08999 * 110.32030 * 359.89156 * 10 2 1 34 34 H 1.09004 * 110.41095 * 142.63332 * 11 10 2 35 35 H 1.09001 * 110.41010 * 265.07285 * 11 10 2 36 36 H 1.08998 * 109.46896 * 50.13111 * 13 12 11 37 37 H 1.08998 * 109.47058 * 170.12448 * 13 12 11 38 38 H 1.08998 * 109.47052 * 305.00202 * 18 14 13 39 39 H 1.09006 * 109.47103 * 64.99724 * 18 14 13 40 40 H 0.97004 * 119.99429 * 179.97438 * 22 21 19 41 41 H 1.08996 * 110.38883 * 280.64017 * 27 12 11 42 42 H 1.09007 * 110.50494 * 158.14713 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7127 2.2128 1.0035 5 8 0.9998 1.8299 1.9069 6 6 2.2349 3.6265 1.0032 7 9 1.7655 4.2973 2.1376 8 9 3.6337 3.6070 1.0190 9 9 1.7906 4.2874 -0.1470 10 6 2.0658 -0.7693 1.2250 11 6 2.8806 -1.9416 0.6377 12 7 3.2693 -1.4836 -0.7211 13 6 3.6068 -2.6233 -1.5842 14 6 4.9208 -3.2490 -1.1124 15 1 4.8401 -3.5116 -0.0576 16 6 6.0173 -2.2840 -1.2952 17 7 6.8634 -1.5393 -1.4363 18 6 5.2087 -4.5091 -1.9311 19 6 6.4364 -5.1925 -1.3864 20 1 6.9588 -4.7706 -0.5405 21 6 6.8920 -6.3570 -1.9671 22 7 7.9631 -6.9537 -1.4914 23 14 5.9880 -7.0872 -3.4296 24 1 6.5513 -6.5328 -4.6868 25 1 6.1484 -8.5635 -3.4240 26 1 4.5455 -6.7458 -3.3408 27 6 2.0662 -0.7700 -1.2260 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 0.5247 0.8836 30 1 -0.3634 -1.0276 0.0126 31 1 2.6084 1.6802 -0.7223 32 1 2.7082 -0.1250 1.8254 33 1 1.2388 -1.1452 1.8273 34 1 3.7670 -2.1297 1.2436 35 1 2.2647 -2.8387 0.5748 36 1 2.8112 -3.3665 -1.5323 37 1 3.7166 -2.2800 -2.6129 38 1 4.3571 -5.1864 -1.8670 39 1 5.3774 -4.2350 -2.9726 40 1 8.2834 -7.7732 -1.8998 41 1 1.3229 -1.4835 -1.5816 42 1 2.3394 -0.0761 -2.0210 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879764085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:25 Heat of formation + Delta-G solvation = -153.608864 kcal Electronic energy + Delta-G solvation = -29058.950564 eV Core-core repulsion = 24431.290588 eV Total energy + Delta-G solvation = -4627.659976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.69583 -48.22643 -48.17928 -41.00580 -39.04041 -36.79635 -35.10340 -33.75212 -32.54735 -31.31630 -29.91067 -27.97292 -27.76718 -25.62858 -23.53013 -22.44862 -21.53463 -21.37264 -20.24315 -19.47995 -19.13463 -18.89489 -17.01056 -16.94968 -16.60534 -16.21353 -15.70793 -15.48676 -15.12685 -14.89957 -14.87863 -14.58751 -14.34628 -14.30265 -14.29009 -14.14277 -13.80766 -13.52003 -13.32310 -13.26955 -12.98190 -12.68059 -12.52436 -12.45114 -12.09648 -11.91598 -11.51970 -11.43851 -11.40314 -11.33855 -11.12366 -10.82939 -10.55093 -10.33040 -10.04190 -9.83931 -9.78225 -9.38203 -8.67346 -8.63145 -6.14979 -4.16103 1.36507 1.47976 2.66999 3.22633 3.25161 3.29216 3.30992 3.60927 3.65327 3.69829 3.72452 3.79409 4.00699 4.33594 4.35021 4.58865 4.73497 4.92249 4.99798 5.05039 5.18753 5.19620 5.29696 5.31459 5.41893 5.46230 5.61922 5.73362 5.74294 5.81633 5.85244 5.97218 6.10106 6.19509 6.54710 6.63789 6.83326 6.87181 7.04300 7.14781 7.58312 8.35753 8.48734 8.88554 9.44495 10.98125 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.002551 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.106048 B =10972.988171 C =11506.458625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 N -0.682 5.682 4 C 0.486 3.514 5 O -0.475 6.475 6 C 0.448 3.552 7 F -0.155 7.155 8 F -0.165 7.165 9 F -0.169 7.169 10 C -0.123 4.123 11 C 0.028 3.972 12 N -0.512 5.512 13 C 0.049 3.951 14 C 0.023 3.977 15 H 0.105 0.895 16 C 0.251 3.749 17 N -0.469 5.469 18 C -0.005 4.005 19 C -0.529 4.529 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.263 1.263 27 C 0.032 3.968 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.069 0.931 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 16.949 2.320 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.084 3.916 3 N -0.335 5.335 4 C 0.263 3.737 5 O -0.348 6.348 6 C 0.390 3.610 7 F -0.136 7.136 8 F -0.146 7.146 9 F -0.151 7.151 10 C -0.162 4.162 11 C -0.100 4.100 12 N -0.236 5.236 13 C -0.080 4.080 14 C 0.001 3.999 15 H 0.123 0.877 16 C -0.066 4.066 17 N -0.146 5.146 18 C -0.044 4.044 19 C -0.567 4.567 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.097 4.097 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.249 0.751 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.050 17.978 2.742 25.623 hybrid contribution -0.774 -0.890 -1.123 1.628 sum -18.824 17.088 1.619 25.475 Atomic orbital electron populations 1.22242 0.92646 1.03439 1.03653 1.21307 0.94266 0.79270 0.96760 1.46089 1.50554 1.12227 1.24624 1.20197 0.83210 0.85637 0.84631 1.90848 1.34793 1.74499 1.34611 1.20364 0.76666 0.89080 0.74883 1.93266 1.88182 1.81472 1.50673 1.93301 1.28459 1.96779 1.96087 1.93262 1.89055 1.82964 1.49795 1.22728 1.00095 0.96991 0.96374 1.23248 0.99634 0.96294 0.90783 1.65507 1.31635 1.23944 1.02509 1.22455 0.96625 0.91476 0.97471 1.18923 0.86047 0.91497 1.03450 0.87712 1.28686 0.93424 0.92141 0.92344 1.81008 1.11095 1.12791 1.09675 1.19645 0.98712 0.90800 0.95212 1.21010 1.09954 1.08435 1.17267 0.90784 1.24995 0.94647 0.96617 0.96849 1.69906 1.23153 1.18936 1.41397 0.86813 0.80845 0.78480 0.83351 1.20231 1.21250 1.18779 1.23415 0.92677 0.97883 0.95700 0.92007 0.90152 0.90735 0.75084 0.90444 0.89821 0.89134 0.92611 0.92289 0.89940 0.94554 0.96094 0.92517 0.91251 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.15 37.16 0.30 -0.83 16 2 C 0.17 1.34 1.01 -130.44 -0.13 1.21 16 3 N -0.68 -5.41 5.09 -46.33 -0.24 -5.64 16 4 C 0.49 4.59 6.53 -10.99 -0.07 4.52 16 5 O -0.48 -5.58 13.90 5.55 0.08 -5.50 16 6 C 0.45 4.04 3.43 36.01 0.12 4.17 16 7 F -0.15 -1.58 16.92 2.25 0.04 -1.55 16 8 F -0.16 -1.58 17.30 2.25 0.04 -1.54 16 9 F -0.17 -1.40 17.30 2.25 0.04 -1.36 16 10 C -0.12 -1.12 5.53 -25.35 -0.14 -1.26 16 11 C 0.03 0.28 5.74 -2.18 -0.01 0.27 16 12 N -0.51 -5.48 5.07 -229.83 -1.17 -6.64 16 13 C 0.05 0.59 4.17 -3.83 -0.02 0.57 16 14 C 0.02 0.38 2.22 -93.41 -0.21 0.17 16 15 H 0.11 1.67 7.05 -51.93 -0.37 1.30 16 16 C 0.25 4.95 13.67 -20.76 -0.28 4.66 16 17 N -0.47 -10.27 18.54 42.15 0.78 -9.49 16 18 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 19 C -0.53 -13.87 9.15 -34.44 -0.32 -14.18 16 20 H 0.07 2.15 7.84 -52.48 -0.41 1.74 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 23 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 27 C 0.03 0.25 5.70 -2.09 -0.01 0.24 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.70 6.17 -51.93 -0.32 0.38 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.41 2.69 8.27 -40.82 -0.34 2.35 16 32 H 0.08 0.83 7.41 -51.93 -0.38 0.44 16 33 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 34 H 0.09 1.00 7.64 -51.93 -0.40 0.60 16 35 H 0.06 0.49 7.82 -51.93 -0.41 0.09 16 36 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 37 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 38 H 0.04 0.69 7.20 -51.93 -0.37 0.32 16 39 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.46 7.72 -51.93 -0.40 0.06 16 42 H 0.09 0.63 7.76 -51.92 -0.40 0.22 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -31.92 361.32 -5.27 -37.20 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.44 Total: -1.67 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.96 Total: 1.20 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.15 Total: -47.65 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.08 Total: -5.50 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.12 Total: -4.44 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.92 -5.27 -37.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879764085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.414 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds