Wall clock time and date at job start Tue Mar 31 2020 18:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.28984 * 2 1 4 4 C 1.34772 * 120.00331 * 59.29599 * 3 2 1 5 5 O 1.21286 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00236 * 180.02562 * 4 3 2 7 7 F 1.39895 * 109.47298 * 180.02562 * 6 4 3 8 8 F 1.39905 * 109.46905 * 300.00109 * 6 4 3 9 9 F 1.39897 * 109.46964 * 60.00315 * 6 4 3 10 10 C 1.54262 * 110.32580 * 122.12790 * 2 1 3 11 11 C 1.54377 * 105.06436 * 118.89363 * 10 2 1 12 12 N 1.48562 * 104.59427 * 23.85274 * 11 10 2 13 13 C 1.46897 * 110.99992 * 200.95790 * 12 11 10 14 14 C 1.52996 * 109.47172 * 290.12891 * 13 12 11 15 15 H 1.08999 * 109.47282 * 54.99966 * 14 13 12 16 16 C 1.47202 * 109.47075 * 294.99607 * 14 13 12 17 17 N 5.73389 * 158.45878 * 223.01756 * 2 1 3 18 18 C 1.53004 * 109.47075 * 175.00018 * 14 13 12 19 19 C 1.50698 * 109.47391 * 184.99650 * 18 14 13 20 20 H 1.08003 * 119.99929 * 0.02562 * 19 18 14 21 21 C 1.37876 * 120.00308 * 179.97438 * 19 18 14 22 22 N 1.31513 * 119.99916 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99768 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47069 * 90.00082 * 23 21 19 25 25 H 1.48504 * 109.47304 * 210.00284 * 23 21 19 26 26 H 1.48503 * 109.47578 * 329.99870 * 23 21 19 27 27 C 1.48720 * 104.28621 * 320.57377 * 12 11 10 28 28 H 1.09002 * 109.47153 * 60.70198 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.70389 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.70371 * 1 2 3 31 31 H 0.97002 * 119.99848 * 239.30064 * 3 2 1 32 32 H 1.09002 * 110.32390 * 237.79288 * 10 2 1 33 33 H 1.08999 * 110.32030 * 359.89156 * 10 2 1 34 34 H 1.09004 * 110.41095 * 142.63332 * 11 10 2 35 35 H 1.09001 * 110.41010 * 265.07285 * 11 10 2 36 36 H 1.08998 * 109.46896 * 50.13111 * 13 12 11 37 37 H 1.08998 * 109.47058 * 170.12448 * 13 12 11 38 38 H 1.08998 * 109.47052 * 305.00202 * 18 14 13 39 39 H 1.09006 * 109.47103 * 64.99724 * 18 14 13 40 40 H 0.97004 * 119.99429 * 179.97438 * 22 21 19 41 41 H 1.08996 * 110.38883 * 280.64017 * 27 12 11 42 42 H 1.09007 * 110.50494 * 158.14713 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7127 2.2128 1.0035 5 8 0.9998 1.8299 1.9069 6 6 2.2349 3.6265 1.0032 7 9 1.7655 4.2973 2.1376 8 9 3.6337 3.6070 1.0190 9 9 1.7906 4.2874 -0.1470 10 6 2.0658 -0.7693 1.2250 11 6 2.8806 -1.9416 0.6377 12 7 3.2693 -1.4836 -0.7211 13 6 3.6068 -2.6233 -1.5842 14 6 4.9208 -3.2490 -1.1124 15 1 4.8401 -3.5116 -0.0576 16 6 6.0173 -2.2840 -1.2952 17 7 6.8634 -1.5393 -1.4363 18 6 5.2087 -4.5091 -1.9311 19 6 6.4364 -5.1925 -1.3864 20 1 6.9588 -4.7706 -0.5405 21 6 6.8920 -6.3570 -1.9671 22 7 7.9631 -6.9537 -1.4914 23 14 5.9880 -7.0872 -3.4296 24 1 6.5513 -6.5328 -4.6868 25 1 6.1484 -8.5635 -3.4240 26 1 4.5455 -6.7458 -3.3408 27 6 2.0662 -0.7700 -1.2260 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 0.5247 0.8836 30 1 -0.3634 -1.0276 0.0126 31 1 2.6084 1.6802 -0.7223 32 1 2.7082 -0.1250 1.8254 33 1 1.2388 -1.1452 1.8273 34 1 3.7670 -2.1297 1.2436 35 1 2.2647 -2.8387 0.5748 36 1 2.8112 -3.3665 -1.5323 37 1 3.7166 -2.2800 -2.6129 38 1 4.3571 -5.1864 -1.8670 39 1 5.3774 -4.2350 -2.9726 40 1 8.2834 -7.7732 -1.8998 41 1 1.3229 -1.4835 -1.5816 42 1 2.3394 -0.0761 -2.0210 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879764085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:25 Heat of formation + Delta-G solvation = -176.563753 kcal Electronic energy + Delta-G solvation = -29059.945963 eV Core-core repulsion = 24431.290588 eV Total energy + Delta-G solvation = -4628.655375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.44195 -48.95560 -48.94737 -41.72193 -39.87572 -38.10276 -36.17423 -35.33265 -33.98559 -32.45760 -30.65754 -29.09440 -28.67280 -26.62505 -24.54841 -23.36078 -23.05251 -22.21658 -20.95188 -20.19670 -19.87254 -19.64204 -18.89432 -18.16333 -17.51229 -16.99937 -16.69405 -16.31933 -16.05038 -15.92345 -15.67351 -15.60942 -15.33478 -15.09314 -15.05432 -15.04556 -14.90363 -14.69013 -14.43890 -14.25344 -14.07184 -13.91207 -13.59013 -13.39139 -13.16997 -13.10702 -13.00991 -12.74172 -12.46259 -12.23417 -12.08700 -11.93976 -11.73228 -11.66638 -11.52098 -11.32072 -11.16809 -10.72266 -10.49334 -9.37493 -8.23072 -6.29016 0.62196 0.76126 1.45219 1.46569 1.57422 1.95776 2.08432 2.15524 2.42865 2.53691 2.95582 2.96347 3.00108 3.13986 3.34058 3.36363 3.67969 3.97457 4.09162 4.25487 4.37901 4.42945 4.47881 4.66139 4.69741 4.74812 4.79524 4.83230 4.90808 4.97773 5.07566 5.12936 5.25117 5.27576 5.31007 5.46930 5.65414 5.85426 5.92917 6.04310 6.28241 6.48627 6.79273 6.93874 7.35629 8.94084 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.002551 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.106048 B =10972.988171 C =11506.458625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 N -0.674 5.674 4 C 0.488 3.512 5 O -0.501 6.501 6 C 0.454 3.546 7 F -0.163 7.163 8 F -0.168 7.168 9 F -0.162 7.162 10 C -0.120 4.120 11 C 0.029 3.971 12 N -0.533 5.533 13 C 0.059 3.941 14 C 0.026 3.974 15 H 0.108 0.892 16 C 0.263 3.737 17 N -0.517 5.517 18 C -0.002 4.002 19 C -0.531 4.531 20 H 0.025 0.975 21 C 0.000 4.000 22 N -0.957 5.957 23 Si 0.950 3.050 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.218 1.218 27 C 0.037 3.963 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.420 0.580 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.783 16.856 0.286 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.083 3.917 3 N -0.326 5.326 4 C 0.265 3.735 5 O -0.375 6.375 6 C 0.395 3.605 7 F -0.144 7.144 8 F -0.150 7.150 9 F -0.144 7.144 10 C -0.159 4.159 11 C -0.099 4.099 12 N -0.257 5.257 13 C -0.070 4.070 14 C 0.004 3.996 15 H 0.126 0.874 16 C -0.053 4.053 17 N -0.195 5.195 18 C -0.041 4.041 19 C -0.569 4.569 20 H 0.043 0.957 21 C -0.196 4.196 22 N -0.598 5.598 23 Si 0.772 3.228 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.140 1.140 27 C -0.091 4.091 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.258 0.742 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.434 17.917 0.698 27.945 hybrid contribution 0.359 -0.809 -0.387 0.966 sum -21.076 17.108 0.311 27.147 Atomic orbital electron populations 1.22192 0.91500 1.04336 1.03316 1.21393 0.95033 0.78852 0.96377 1.46118 1.50055 1.12186 1.24253 1.20213 0.82925 0.85747 0.84592 1.90840 1.36096 1.74955 1.35617 1.20276 0.76397 0.88980 0.74799 1.93248 1.88267 1.81653 1.51233 1.93295 1.28795 1.96792 1.96108 1.93275 1.88946 1.82837 1.49319 1.22674 0.99824 0.96656 0.96764 1.23226 0.99135 0.97202 0.90330 1.65415 1.33798 1.23766 1.02700 1.22327 0.94315 0.92563 0.97748 1.19049 0.87482 0.89737 1.03310 0.87394 1.29447 0.93193 0.91705 0.90993 1.81005 1.12536 1.14650 1.11280 1.19599 0.96694 0.92289 0.95564 1.21424 1.11561 1.08341 1.15574 0.95653 1.26088 0.95585 0.97405 1.00542 1.70103 1.25877 1.19882 1.43901 0.85680 0.81826 0.76872 0.78390 1.20271 1.21881 1.13980 1.23483 0.91977 0.98147 0.95481 0.90793 0.92056 0.89181 0.74192 0.92686 0.89163 0.91173 0.90795 0.89282 0.88979 0.91542 0.95381 0.92732 0.88805 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.15 71.98 0.59 -1.12 16 2 C 0.17 2.22 1.01 4.50 0.00 2.22 16 3 N -0.67 -9.51 5.09 -418.88 -2.13 -11.64 16 4 C 0.49 8.80 6.53 87.66 0.57 9.38 16 5 O -0.50 -11.54 13.90 -3.05 -0.04 -11.58 16 6 C 0.45 7.89 3.43 71.24 0.24 8.13 16 7 F -0.16 -3.29 16.92 44.97 0.76 -2.53 16 8 F -0.17 -3.14 17.30 44.97 0.78 -2.37 16 9 F -0.16 -2.48 17.30 44.97 0.78 -1.70 16 10 C -0.12 -2.00 5.53 31.49 0.17 -1.83 16 11 C 0.03 0.50 5.74 86.45 0.50 1.00 16 12 N -0.53 -9.72 5.07 -881.05 -4.47 -14.19 16 13 C 0.06 1.18 4.17 86.30 0.36 1.54 16 14 C 0.03 0.81 2.22 -12.60 -0.03 0.78 16 15 H 0.11 3.29 7.05 -2.39 -0.02 3.28 16 16 C 0.26 10.23 13.67 89.44 1.22 11.45 16 17 N -0.52 -22.87 18.54 20.01 0.37 -22.50 16 18 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 19 C -0.53 -27.96 9.15 25.60 0.23 -27.72 16 20 H 0.03 1.53 7.84 -2.91 -0.02 1.51 16 21 C 0.00 0.01 5.47 84.65 0.46 0.47 16 22 N -0.96 -58.77 13.96 21.45 0.30 -58.47 16 23 Si 0.95 40.09 27.47 68.60 1.88 41.97 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.22 -7.56 6.54 99.48 0.65 -6.91 16 27 C 0.04 0.42 5.70 86.42 0.49 0.92 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.96 6.17 -2.39 -0.01 0.94 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.42 4.63 8.27 -92.71 -0.77 3.87 16 32 H 0.05 1.16 7.41 -2.39 -0.02 1.15 16 33 H 0.09 1.37 7.71 -2.39 -0.02 1.35 16 34 H 0.07 1.50 7.64 -2.39 -0.02 1.48 16 35 H 0.07 1.03 7.82 -2.39 -0.02 1.01 16 36 H 0.09 1.29 7.88 -2.39 -0.02 1.27 16 37 H 0.09 1.70 8.13 -2.39 -0.02 1.68 16 38 H 0.07 2.18 7.20 -2.39 -0.02 2.16 16 39 H 0.03 1.04 7.57 -2.38 -0.02 1.02 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.09 0.70 7.72 -2.39 -0.02 0.68 16 42 H 0.10 0.97 7.76 -2.38 -0.02 0.96 16 Total: -1.00 -72.78 361.32 3.41 -69.37 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.25 Total: 8.41 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.93 Total: 5.23 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -5.93 Total: -106.80 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.04 Total: -11.58 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 2.32 Total: -6.60 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.88 Total: 41.97 kcal Total: -72.78 3.41 -69.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879764085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.194 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds