Wall clock time and date at job start Tue Mar 31 2020 17:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00213 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00376 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.88515 * 31.11557 * 10 9 7 12 12 C 1.54914 * 111.00475 * 267.19616 * 10 9 7 13 13 N 1.47424 * 104.83509 * 204.91620 * 12 10 9 14 14 C 1.34776 * 125.64834 * 204.14925 * 13 12 10 15 15 O 1.21278 * 119.99897 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00066 * 359.97420 * 14 13 12 17 17 N 1.46493 * 109.47332 * 179.97438 * 16 14 13 18 18 N 1.28888 * 125.45005 * 269.71580 * 17 16 14 19 19 C 1.31035 * 107.91573 * 179.89355 * 18 17 16 20 20 N 1.33321 * 106.90547 * 0.36238 * 19 18 17 21 21 N 1.28780 * 125.45195 * 90.02255 * 17 16 14 22 22 C 1.47020 * 108.70238 * 24.12340 * 13 12 10 23 23 C 1.54320 * 107.27413 * 358.94552 * 22 13 12 24 24 H 1.08998 * 110.72225 * 219.44354 * 23 22 13 25 25 N 1.46507 * 110.87360 * 96.23726 * 23 22 13 26 26 C 1.35303 * 125.86477 * 331.10682 * 25 23 22 27 27 C 1.35357 * 106.17347 * 179.90309 * 26 25 23 28 28 N 1.33773 * 106.49213 * 0.35545 * 27 26 25 29 29 N 1.28632 * 108.88918 * 359.77185 * 28 27 26 30 30 H 0.97006 * 119.99732 * 0.02562 * 1 2 3 31 31 H 0.97009 * 120.00147 * 359.97438 * 9 7 2 32 32 H 1.09007 * 110.36518 * 323.75551 * 12 10 9 33 33 H 1.08998 * 110.36657 * 86.07285 * 12 10 9 34 34 H 1.08999 * 109.46888 * 299.99980 * 16 14 13 35 35 H 1.09004 * 109.47407 * 59.99946 * 16 14 13 36 36 H 1.08006 * 126.55133 * 180.14080 * 19 18 17 37 37 H 1.09001 * 109.88191 * 239.52482 * 22 13 12 38 38 H 1.09002 * 109.87720 * 118.35953 * 22 13 12 39 39 H 1.08007 * 126.91959 * 0.02562 * 26 25 23 40 40 H 1.08001 * 126.75178 * 180.12230 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5516 -3.2432 -0.5256 12 6 4.4505 -2.9167 1.4456 13 7 5.6361 -3.7816 1.3057 14 6 6.0145 -4.7418 2.1724 15 8 7.0125 -5.3957 1.9551 16 6 5.1976 -5.0030 3.4115 17 7 5.8126 -6.0861 4.1826 18 7 5.5472 -7.3406 4.0523 19 6 6.2912 -8.0008 4.9054 20 7 7.0157 -7.0983 5.5674 21 7 6.7008 -5.9367 5.1030 22 6 6.3370 -3.4235 0.0639 23 6 5.5274 -2.2960 -0.6105 24 1 5.5001 -2.4342 -1.6913 25 7 6.0798 -0.9821 -0.2715 26 6 6.7377 -0.6689 0.8686 27 6 7.0708 0.6389 0.7645 28 7 6.5995 1.0581 -0.4152 29 7 6.0177 0.0740 -1.0047 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3621 0.0007 32 1 4.6836 -2.0506 2.0651 33 1 3.6199 -3.4778 1.8738 34 1 5.1608 -4.0991 4.0196 35 1 4.1856 -5.2901 3.1258 36 1 6.3109 -9.0712 5.0479 37 1 6.3875 -4.2895 -0.5962 38 1 7.3424 -3.0711 0.2942 39 1 6.9552 -1.3299 1.6946 40 1 7.6078 1.2288 1.4925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070193685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:06 Heat of formation + Delta-G solvation = 247.185248 kcal Electronic energy + Delta-G solvation = -28917.804351 eV Core-core repulsion = 24810.426011 eV Total energy + Delta-G solvation = -4107.378340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.55046 -43.25726 -40.53221 -38.33763 -35.23726 -34.73065 -33.94461 -33.29483 -31.71012 -31.03403 -30.59141 -29.00460 -28.35685 -24.94697 -24.18149 -23.81563 -23.20040 -22.53496 -21.85233 -20.55258 -20.08981 -18.55265 -18.18682 -18.04423 -17.56812 -16.76750 -16.36562 -16.04194 -15.76310 -15.27863 -15.02602 -14.94311 -14.28979 -14.21464 -14.03143 -13.80632 -13.68802 -13.30136 -12.94659 -12.81775 -12.68485 -12.21311 -12.05437 -11.72819 -11.57706 -11.41947 -11.31585 -11.19756 -11.05708 -10.90952 -10.82231 -10.37025 -10.28231 -10.05224 -9.84330 -9.35914 -9.26465 -9.09851 -7.71861 -6.07281 -3.49970 0.91796 1.44752 1.68461 1.97938 2.04248 2.28075 2.50305 2.71674 3.25896 3.30390 3.39656 3.65199 3.78998 3.96487 4.13304 4.26737 4.36408 4.40615 4.50437 4.57424 4.63192 4.83236 4.97921 5.08062 5.15868 5.22888 5.27388 5.31583 5.45097 5.45718 5.48613 5.61381 5.65116 5.79380 5.84158 5.98839 6.22525 6.64738 6.89688 7.49164 7.59209 8.08713 8.12705 8.63821 8.81929 9.55776 9.67415 11.08277 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.003595 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.962523 B = 7786.635281 C = 8923.121389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.272 4.272 8 H 0.097 0.903 9 N -0.726 5.726 10 C 0.175 3.825 11 H 0.106 0.894 12 C 0.054 3.946 13 N -0.609 5.609 14 C 0.525 3.475 15 O -0.524 6.524 16 C 0.114 3.886 17 N -0.126 5.126 18 N -0.300 5.300 19 C 0.144 3.856 20 N -0.286 5.286 21 N -0.049 5.049 22 C 0.109 3.891 23 C 0.109 3.891 24 H 0.139 0.861 25 N -0.273 5.273 26 C -0.050 4.050 27 C -0.053 4.053 28 N -0.274 5.274 29 N -0.073 5.073 30 H 0.265 0.735 31 H 0.371 0.629 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.236 0.764 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.182 0.818 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.831 -11.055 6.112 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.174 4.174 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.214 1.214 7 C -0.401 4.401 8 H 0.115 0.885 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.124 0.876 12 C -0.072 4.072 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.400 6.400 16 C -0.010 4.010 17 N -0.037 5.037 18 N -0.149 5.149 19 C -0.159 4.159 20 N -0.157 5.157 21 N -0.043 5.043 22 C -0.015 4.015 23 C 0.005 3.995 24 H 0.157 0.843 25 N -0.067 5.067 26 C -0.200 4.200 27 C -0.210 4.210 28 N -0.140 5.140 29 N -0.052 5.052 30 H 0.075 0.925 31 H 0.206 0.794 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.199 0.801 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.709 -10.236 4.762 16.265 hybrid contribution 0.672 0.157 1.054 1.259 sum 12.381 -10.079 5.816 16.991 Atomic orbital electron populations 1.69690 1.05132 1.26546 1.54804 1.24652 0.95175 0.97420 1.00185 0.86649 0.78951 0.84719 0.78770 1.20179 1.20449 1.21355 1.18962 0.79536 0.95095 1.46515 0.88527 1.42703 1.04647 1.01068 1.88354 1.21622 0.88336 0.92038 0.91964 0.87618 1.23887 0.86086 0.93991 1.03190 1.48346 1.28388 1.35317 1.22394 1.19787 0.85571 0.79866 0.83821 1.90825 1.26040 1.47828 1.75297 1.21988 0.98250 0.88762 0.91993 1.49505 1.25441 1.05102 1.23697 1.74728 1.25176 0.91170 1.23852 1.27356 0.93175 1.02921 0.92416 1.75889 1.21843 0.94772 1.23194 1.79004 1.03998 1.19674 1.01657 1.22206 0.96009 0.97102 0.86155 1.23295 0.96153 0.76839 1.03200 0.84318 1.47334 1.35952 1.10620 1.12838 1.23491 1.03733 0.98937 0.93885 1.23553 1.06069 0.93546 0.97827 1.75127 1.10906 1.20946 1.07003 1.78405 1.18387 0.89125 1.19306 0.92499 0.79377 0.90234 0.89018 0.83269 0.83182 0.74761 0.88109 0.89759 0.80059 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 13.97 55.49 0.78 -25.86 16 2 C 0.02 0.66 5.50 -17.43 -0.10 0.56 16 3 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.27 -6.69 10.44 -15.06 -0.16 -6.84 16 8 H 0.10 2.47 8.06 -52.48 -0.42 2.04 16 9 N -0.73 -14.48 5.01 -51.35 -0.26 -14.74 16 10 C 0.18 2.42 3.58 -65.78 -0.24 2.18 16 11 H 0.11 1.39 8.09 -51.93 -0.42 0.97 16 12 C 0.05 0.58 5.97 -2.53 -0.02 0.57 16 13 N -0.61 -5.80 3.33 -170.52 -0.57 -6.37 16 14 C 0.52 5.56 7.92 -10.99 -0.09 5.48 16 15 O -0.52 -7.66 16.76 5.56 0.09 -7.57 16 16 C 0.11 0.94 6.09 -5.20 -0.03 0.91 16 17 N -0.13 -1.43 3.49 -11.72 -0.04 -1.47 16 18 N -0.30 -3.43 12.13 29.34 0.36 -3.08 16 19 C 0.14 1.44 13.26 -91.58 -1.21 0.23 16 20 N -0.29 -3.58 12.50 29.33 0.37 -3.22 16 21 N -0.05 -0.64 13.25 60.35 0.80 0.16 16 22 C 0.11 1.02 5.92 -3.07 -0.02 1.00 16 23 C 0.11 1.27 3.96 -66.09 -0.26 1.00 16 24 H 0.14 1.44 8.14 -51.93 -0.42 1.02 16 25 N -0.27 -3.88 2.38 -52.98 -0.13 -4.01 16 26 C -0.05 -0.62 9.36 -17.05 -0.16 -0.78 16 27 C -0.05 -0.73 12.06 -17.73 -0.21 -0.94 16 28 N -0.27 -4.87 12.41 30.24 0.38 -4.50 16 29 N -0.07 -1.30 12.28 60.35 0.74 -0.56 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.37 7.89 3.85 -40.82 -0.16 7.73 16 32 H 0.08 0.92 7.58 -51.92 -0.39 0.52 16 33 H 0.09 0.86 7.48 -51.93 -0.39 0.47 16 34 H 0.15 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.15 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.24 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.80 7.19 -51.93 -0.37 0.42 16 39 H 0.18 1.74 7.72 -52.48 -0.41 1.33 16 40 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -36.54 346.70 -3.71 -40.26 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.25 Total: 5.37 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.49 Total: 3.36 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 2.42 Total: -63.64 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.54 -3.71 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070193685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 287.442 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 250.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 247.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds