Wall clock time and date at job start Tue Mar 31 2020 17:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00213 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00376 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.88515 * 31.11557 * 10 9 7 12 12 C 1.54914 * 111.00475 * 267.19616 * 10 9 7 13 13 N 1.47424 * 104.83509 * 204.91620 * 12 10 9 14 14 C 1.34776 * 125.64834 * 204.14925 * 13 12 10 15 15 O 1.21278 * 119.99897 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00066 * 359.97420 * 14 13 12 17 17 N 1.46493 * 109.47332 * 179.97438 * 16 14 13 18 18 N 1.28888 * 125.45005 * 269.71580 * 17 16 14 19 19 C 1.31035 * 107.91573 * 179.89355 * 18 17 16 20 20 N 1.33321 * 106.90547 * 0.36238 * 19 18 17 21 21 N 1.28780 * 125.45195 * 90.02255 * 17 16 14 22 22 C 1.47020 * 108.70238 * 24.12340 * 13 12 10 23 23 C 1.54320 * 107.27413 * 358.94552 * 22 13 12 24 24 H 1.08998 * 110.72225 * 219.44354 * 23 22 13 25 25 N 1.46507 * 110.87360 * 96.23726 * 23 22 13 26 26 C 1.35303 * 125.86477 * 331.10682 * 25 23 22 27 27 C 1.35357 * 106.17347 * 179.90309 * 26 25 23 28 28 N 1.33773 * 106.49213 * 0.35545 * 27 26 25 29 29 N 1.28632 * 108.88918 * 359.77185 * 28 27 26 30 30 H 0.97006 * 119.99732 * 0.02562 * 1 2 3 31 31 H 0.97009 * 120.00147 * 359.97438 * 9 7 2 32 32 H 1.09007 * 110.36518 * 323.75551 * 12 10 9 33 33 H 1.08998 * 110.36657 * 86.07285 * 12 10 9 34 34 H 1.08999 * 109.46888 * 299.99980 * 16 14 13 35 35 H 1.09004 * 109.47407 * 59.99946 * 16 14 13 36 36 H 1.08006 * 126.55133 * 180.14080 * 19 18 17 37 37 H 1.09001 * 109.88191 * 239.52482 * 22 13 12 38 38 H 1.09002 * 109.87720 * 118.35953 * 22 13 12 39 39 H 1.08007 * 126.91959 * 0.02562 * 26 25 23 40 40 H 1.08001 * 126.75178 * 180.12230 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5516 -3.2432 -0.5256 12 6 4.4505 -2.9167 1.4456 13 7 5.6361 -3.7816 1.3057 14 6 6.0145 -4.7418 2.1724 15 8 7.0125 -5.3957 1.9551 16 6 5.1976 -5.0030 3.4115 17 7 5.8126 -6.0861 4.1826 18 7 5.5472 -7.3406 4.0523 19 6 6.2912 -8.0008 4.9054 20 7 7.0157 -7.0983 5.5674 21 7 6.7008 -5.9367 5.1030 22 6 6.3370 -3.4235 0.0639 23 6 5.5274 -2.2960 -0.6105 24 1 5.5001 -2.4342 -1.6913 25 7 6.0798 -0.9821 -0.2715 26 6 6.7377 -0.6689 0.8686 27 6 7.0708 0.6389 0.7645 28 7 6.5995 1.0581 -0.4152 29 7 6.0177 0.0740 -1.0047 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3621 0.0007 32 1 4.6836 -2.0506 2.0651 33 1 3.6199 -3.4778 1.8738 34 1 5.1608 -4.0991 4.0196 35 1 4.1856 -5.2901 3.1258 36 1 6.3109 -9.0712 5.0479 37 1 6.3875 -4.2895 -0.5962 38 1 7.3424 -3.0711 0.2942 39 1 6.9552 -1.3299 1.6946 40 1 7.6078 1.2288 1.4925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070193685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:06 Heat of formation + Delta-G solvation = 218.695737 kcal Electronic energy + Delta-G solvation = -28919.039749 eV Core-core repulsion = 24810.426011 eV Total energy + Delta-G solvation = -4108.613738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.35099 -44.35757 -41.43506 -39.35463 -36.21915 -36.01504 -35.09549 -34.10567 -33.43992 -32.08615 -31.60132 -29.99652 -29.40335 -26.03794 -25.26808 -24.96463 -24.06977 -23.69149 -23.00254 -21.67006 -20.94799 -20.04516 -19.09504 -19.07821 -18.46769 -17.72967 -17.23533 -17.20285 -16.67298 -16.45205 -16.11565 -16.02471 -15.69516 -15.20937 -14.96017 -14.88782 -14.71285 -14.51749 -14.32847 -13.87005 -13.59577 -13.30595 -13.14204 -12.99789 -12.91918 -12.72069 -12.52193 -12.27765 -12.18307 -12.03365 -11.95216 -11.89043 -11.75430 -11.34259 -11.10795 -10.99954 -10.36198 -10.02053 -9.49213 -8.11941 -5.46458 0.08750 0.60765 0.74887 1.17818 1.26991 1.27316 1.30648 1.34354 1.39059 1.60538 1.66977 2.36992 2.74761 3.07238 3.15499 3.20186 3.35822 3.47328 3.48435 3.61117 3.84795 3.87715 3.94975 3.99194 4.11670 4.17804 4.27079 4.44828 4.51356 4.67238 4.71914 4.75324 4.78974 4.85503 4.95249 5.07165 5.22324 5.60677 5.69893 6.05200 6.12197 6.67968 6.95408 7.31209 7.50223 7.69308 7.82045 9.07717 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.003595 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.962523 B = 7786.635281 C = 8923.121389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.037 4.037 3 Si 0.928 3.072 4 H -0.293 1.293 5 H -0.272 1.272 6 H -0.295 1.295 7 C -0.227 4.227 8 H 0.088 0.912 9 N -0.739 5.739 10 C 0.162 3.838 11 H 0.116 0.884 12 C 0.068 3.932 13 N -0.598 5.598 14 C 0.532 3.468 15 O -0.564 6.564 16 C 0.106 3.894 17 N -0.125 5.125 18 N -0.316 5.316 19 C 0.149 3.851 20 N -0.312 5.312 21 N -0.071 5.071 22 C 0.116 3.884 23 C 0.112 3.888 24 H 0.149 0.851 25 N -0.272 5.272 26 C -0.036 4.036 27 C -0.061 4.061 28 N -0.313 5.313 29 N -0.117 5.117 30 H 0.258 0.742 31 H 0.365 0.635 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.275 0.725 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.214 0.786 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 -12.869 7.315 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.231 4.231 3 Si 0.759 3.241 4 H -0.221 1.221 5 H -0.197 1.197 6 H -0.222 1.222 7 C -0.357 4.357 8 H 0.105 0.895 9 N -0.381 5.381 10 C 0.050 3.950 11 H 0.134 0.866 12 C -0.057 4.057 13 N -0.332 5.332 14 C 0.319 3.681 15 O -0.443 6.443 16 C -0.016 4.016 17 N -0.037 5.037 18 N -0.166 5.166 19 C -0.153 4.153 20 N -0.182 5.182 21 N -0.065 5.065 22 C -0.007 4.007 23 C 0.009 3.991 24 H 0.167 0.833 25 N -0.066 5.066 26 C -0.187 4.187 27 C -0.219 4.219 28 N -0.178 5.178 29 N -0.096 5.096 30 H 0.068 0.932 31 H 0.200 0.800 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.196 0.804 35 H 0.195 0.805 36 H 0.291 0.709 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.231 0.769 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 13.171 -12.078 5.959 18.837 hybrid contribution 0.353 0.554 0.666 0.935 sum 13.523 -11.525 6.625 18.963 Atomic orbital electron populations 1.69787 1.06369 1.26431 1.58994 1.25127 0.95560 0.99635 1.02776 0.85861 0.78111 0.82633 0.77481 1.22063 1.19744 1.22207 1.19059 0.81552 0.93948 1.41171 0.89469 1.42704 1.03172 1.03190 1.89033 1.21957 0.89103 0.89757 0.94198 0.86612 1.23531 0.87171 0.94557 1.00392 1.48192 1.27778 1.34858 1.22368 1.20058 0.85010 0.78959 0.84096 1.90823 1.27950 1.49209 1.76284 1.22398 0.98614 0.89452 0.91166 1.49757 1.24966 1.05605 1.23379 1.74723 1.25899 0.91450 1.24514 1.28188 0.91709 1.04350 0.91079 1.75860 1.22880 0.95261 1.24239 1.78944 1.04828 1.20142 1.02557 1.22222 0.95604 0.96692 0.86197 1.23394 0.94940 0.76619 1.04158 0.83314 1.47536 1.35513 1.10585 1.12968 1.24001 1.02024 0.98955 0.93750 1.24199 1.05863 0.94559 0.97288 1.75070 1.12051 1.21879 1.08833 1.78352 1.20272 0.90196 1.20782 0.93221 0.80047 0.90195 0.86930 0.80447 0.80458 0.70936 0.86328 0.89202 0.76893 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.19 13.97 21.65 0.30 -56.89 16 2 C -0.04 -2.03 5.50 84.86 0.47 -1.57 16 3 Si 0.93 45.67 27.74 68.60 1.90 47.58 16 4 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 5 H -0.27 -12.80 6.52 99.48 0.65 -12.15 16 6 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 7 C -0.23 -10.90 10.44 84.03 0.88 -10.02 16 8 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 9 N -0.74 -28.08 5.01 -316.38 -1.59 -29.66 16 10 C 0.16 3.98 3.58 46.39 0.17 4.14 16 11 H 0.12 2.67 8.09 -2.39 -0.02 2.65 16 12 C 0.07 1.19 5.97 86.86 0.52 1.71 16 13 N -0.60 -8.96 3.33 -811.79 -2.70 -11.66 16 14 C 0.53 9.38 7.92 87.66 0.69 10.07 16 15 O -0.56 -14.95 16.76 -3.02 -0.05 -15.00 16 16 C 0.11 1.35 6.09 85.63 0.52 1.88 16 17 N -0.12 -2.51 3.49 -191.00 -0.67 -3.17 16 18 N -0.32 -6.45 12.13 -61.09 -0.74 -7.19 16 19 C 0.15 2.64 13.26 180.68 2.40 5.03 16 20 N -0.31 -7.30 12.50 -61.11 -0.76 -8.07 16 21 N -0.07 -1.70 13.25 37.02 0.49 -1.21 16 22 C 0.12 1.75 5.92 86.73 0.51 2.26 16 23 C 0.11 2.28 3.96 46.18 0.18 2.46 16 24 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 25 N -0.27 -7.11 2.38 -321.52 -0.77 -7.87 16 26 C -0.04 -0.79 9.36 83.49 0.78 -0.01 16 27 C -0.06 -1.56 12.06 83.73 1.01 -0.55 16 28 N -0.31 -10.87 12.41 -58.25 -0.72 -11.60 16 29 N -0.12 -4.08 12.28 37.02 0.45 -3.62 16 30 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 31 H 0.37 14.97 3.85 -92.70 -0.36 14.61 16 32 H 0.08 1.49 7.58 -2.38 -0.02 1.47 16 33 H 0.11 1.57 7.48 -2.39 -0.02 1.56 16 34 H 0.18 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.18 1.26 7.85 -2.38 -0.02 1.24 16 36 H 0.28 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.36 7.19 -2.39 -0.02 1.34 16 39 H 0.21 3.13 7.72 -2.91 -0.02 3.11 16 40 H 0.22 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -81.96 346.70 3.97 -77.98 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.69 Total: 14.99 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 8.13 Total: 15.41 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -6.70 Total: -140.95 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.05 Total: -15.00 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Total: -81.96 3.97 -77.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070193685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 296.676 kcal (2) G-P(sol) polarization free energy of solvation -81.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 218.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds