Wall clock time and date at job start Tue Mar 31 2020 17:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48500 * 109.46959 * 270.00163 * 3 2 1 5 5 H 1.48499 * 109.46863 * 29.99590 * 3 2 1 6 6 H 1.48498 * 109.47248 * 149.99714 * 3 2 1 7 7 C 1.37877 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99724 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00505 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47309 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47023 * 184.95915 * 10 9 7 12 12 C 1.33119 * 117.26697 * 84.58894 * 11 10 9 13 13 O 1.21285 * 118.57532 * 359.86950 * 12 11 10 14 14 C 1.50314 * 122.85547 * 179.84287 * 12 11 10 15 15 C 1.52987 * 109.18426 * 21.47454 * 14 12 11 16 16 C 1.52310 * 109.48327 * 308.13931 * 15 14 12 17 17 H 1.09004 * 109.99040 * 185.20520 * 16 15 14 18 18 C 1.45412 * 117.26704 * 264.61418 * 11 10 9 19 19 H 1.09006 * 112.02545 * 64.17028 * 18 11 10 20 20 C 1.55420 * 108.17225 * 300.83432 * 18 11 10 21 21 C 1.54348 * 103.08182 * 277.09665 * 20 18 11 22 22 N 1.46915 * 110.85104 * 306.86059 * 16 15 14 23 23 C 1.34773 * 125.73315 * 323.06740 * 22 16 15 24 24 O 1.21583 * 120.00119 * 359.97438 * 23 22 16 25 25 C 1.47515 * 119.99741 * 180.28046 * 23 22 16 26 26 C 1.36827 * 126.94315 * 179.72726 * 25 23 22 27 27 C 1.41268 * 103.84457 * 179.97438 * 26 25 23 28 28 N 1.30123 * 106.58946 * 0.02562 * 27 26 25 29 29 O 1.20889 * 111.98706 * 359.69570 * 28 27 26 30 30 H 0.96997 * 119.99628 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46888 * 60.00231 * 9 7 2 32 32 H 1.08997 * 109.47319 * 300.00413 * 9 7 2 33 33 H 1.09000 * 109.46867 * 64.96413 * 10 9 7 34 34 H 1.08995 * 109.47305 * 304.96178 * 10 9 7 35 35 H 1.09002 * 109.51857 * 141.38243 * 14 12 11 36 36 H 1.08994 * 109.52205 * 261.56342 * 14 12 11 37 37 H 1.08999 * 109.46309 * 188.13746 * 15 14 12 38 38 H 1.08996 * 109.46695 * 68.14903 * 15 14 12 39 39 H 1.08997 * 110.70684 * 35.66641 * 20 18 11 40 40 H 1.09000 * 110.70891 * 158.91482 * 20 18 11 41 41 H 1.08999 * 109.99741 * 218.72150 * 21 20 18 42 42 H 1.08997 * 109.78151 * 97.51937 * 21 20 18 43 43 H 1.07994 * 128.07451 * 0.02562 * 26 25 23 44 44 H 1.07998 * 126.69951 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0014 11 7 5.4817 -2.6383 0.1202 12 6 5.9938 -2.5601 1.3464 13 8 5.2340 -2.4900 2.2891 14 6 7.4730 -2.5554 1.6136 15 6 8.2113 -2.1175 0.3472 16 6 7.7452 -2.9633 -0.8307 17 1 8.3309 -2.7218 -1.7177 18 6 6.2502 -2.7247 -1.1112 19 1 6.0984 -1.8543 -1.7497 20 6 5.8556 -4.0409 -1.8375 21 6 6.7307 -5.1021 -1.1373 22 7 7.8680 -4.3955 -0.5270 23 6 8.8590 -4.9668 0.1856 24 8 9.7549 -4.2813 0.6392 25 6 8.8603 -6.4249 0.4096 26 6 9.7917 -7.1497 1.1019 27 6 9.3209 -8.4786 1.0121 28 7 8.2207 -8.4369 0.3186 29 8 7.9423 -7.3106 -0.0212 30 1 -0.4849 0.8401 -0.0004 31 1 3.8752 -0.6798 0.8895 32 1 3.8746 -0.6809 -0.8904 33 1 3.7322 -3.1252 -0.9291 34 1 3.5877 -3.1746 0.8443 35 1 7.6947 -1.8600 2.4232 36 1 7.7955 -3.5579 1.8948 37 1 9.2840 -2.2502 0.4878 38 1 7.9983 -1.0674 0.1473 39 1 4.7967 -4.2567 -1.6959 40 1 6.1001 -3.9840 -2.8982 41 1 7.0925 -5.8270 -1.8664 42 1 6.1506 -5.6074 -0.3650 43 1 10.6791 -6.7897 1.6012 44 1 9.7838 -9.3574 1.4362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268883075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:40 Heat of formation + Delta-G solvation = 16.080462 kcal Electronic energy + Delta-G solvation = -29991.046630 eV Core-core repulsion = 25912.601676 eV Total energy + Delta-G solvation = -4078.444954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.39801 -41.52451 -39.41559 -37.74498 -35.16605 -34.36280 -34.13190 -32.87328 -32.34887 -31.09892 -29.67596 -28.65932 -25.43626 -25.26286 -23.95412 -23.76600 -22.51426 -21.95261 -21.09401 -20.24418 -18.41057 -18.15104 -17.97062 -17.33750 -16.71919 -16.50546 -16.27784 -15.88364 -15.60535 -14.99136 -14.59691 -14.39933 -14.14142 -14.00536 -13.81541 -13.69790 -13.54428 -12.96051 -12.84810 -12.77086 -12.57366 -12.22979 -12.08780 -11.87002 -11.56612 -11.36256 -11.17103 -11.09676 -10.97881 -10.92120 -10.44131 -10.40845 -10.15873 -9.97367 -9.82265 -9.35936 -9.14823 -9.03100 -8.53159 -8.26316 -6.04133 -4.02230 0.40645 1.69466 2.09930 2.58589 2.68674 3.01938 3.29324 3.30048 3.39105 3.44870 3.80869 3.87232 4.16567 4.23984 4.46263 4.51482 4.58957 4.64727 4.70253 4.77152 4.92313 4.97974 5.05810 5.24335 5.30414 5.35341 5.41223 5.46084 5.50946 5.58707 5.68912 5.75618 5.83114 5.92143 6.02516 6.10402 6.35268 6.62288 6.68367 6.91628 7.22805 7.41136 7.44154 7.70292 7.76403 7.88879 8.50297 8.58161 8.99443 9.58219 11.09179 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.003271 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.929720 B = 8558.736288 C = 8961.502786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.020 4.020 10 C 0.117 3.883 11 N -0.596 5.596 12 C 0.512 3.488 13 O -0.541 6.541 14 C -0.128 4.128 15 C -0.134 4.134 16 C 0.133 3.867 17 H 0.100 0.900 18 C 0.136 3.864 19 H 0.111 0.889 20 C -0.149 4.149 21 C 0.098 3.902 22 N -0.598 5.598 23 C 0.620 3.380 24 O -0.507 6.507 25 C -0.081 4.081 26 C -0.153 4.153 27 C -0.015 4.015 28 N -0.345 5.345 29 O 0.120 5.880 30 H 0.263 0.737 31 H 0.023 0.977 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.185 0.815 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.932 -13.181 -4.560 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.059 4.059 10 C -0.004 4.004 11 N -0.328 5.328 12 C 0.299 3.701 13 O -0.418 6.418 14 C -0.168 4.168 15 C -0.172 4.172 16 C 0.030 3.970 17 H 0.118 0.882 18 C 0.030 3.970 19 H 0.128 0.872 20 C -0.187 4.187 21 C -0.025 4.025 22 N -0.332 5.332 23 C 0.406 3.594 24 O -0.383 6.383 25 C -0.147 4.147 26 C -0.175 4.175 27 C -0.193 4.193 28 N -0.044 5.044 29 O 0.046 5.954 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.202 0.798 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 22.075 -13.646 -4.164 26.284 hybrid contribution 0.988 1.113 0.302 1.519 sum 23.063 -12.533 -3.861 26.531 Atomic orbital electron populations 1.69908 1.06259 1.26892 1.51075 1.24974 0.94695 0.99095 0.94487 0.86777 0.80545 0.83695 0.78281 1.20370 1.21365 1.19062 1.20962 0.89002 0.94585 1.50981 0.90918 1.19816 0.97286 0.92215 0.96550 1.21753 0.76127 1.00598 1.01921 1.47308 1.08723 1.72176 1.04604 1.19972 0.90845 0.76628 0.82621 1.90763 1.60246 1.49410 1.41398 1.21577 0.91766 1.04049 0.99393 1.21767 1.02913 0.99559 0.92951 1.21824 0.95908 0.79791 0.99438 0.88226 1.21979 0.89283 0.98610 0.87081 0.87157 1.23294 1.01837 0.93625 0.99951 1.22266 0.86804 0.95558 0.97848 1.48302 1.24169 1.08980 1.51703 1.16049 0.81755 0.82910 0.78641 1.90852 1.36091 1.60751 1.50628 1.24234 0.93180 0.93152 1.04109 1.23038 1.01645 0.91878 1.00980 1.25158 0.93869 0.99365 1.00867 1.73801 1.16824 1.00002 1.13781 1.85069 1.41665 1.11260 1.57399 0.92721 0.95897 0.97275 0.90969 0.90253 0.88340 0.89432 0.88144 0.89919 0.87847 0.89024 0.90203 0.90427 0.79786 0.78313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.49 4.27 -27.88 -0.12 -0.60 16 10 C 0.12 2.24 4.73 -4.04 -0.02 2.22 16 11 N -0.60 -9.35 2.52 -165.49 -0.42 -9.77 16 12 C 0.51 8.99 7.34 -11.91 -0.09 8.91 16 13 O -0.54 -12.23 16.01 5.55 0.09 -12.14 16 14 C -0.13 -1.75 5.59 -28.08 -0.16 -1.91 16 15 C -0.13 -1.45 4.95 -27.09 -0.13 -1.58 16 16 C 0.13 1.27 3.27 -67.55 -0.22 1.05 16 17 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 18 C 0.14 1.49 3.66 -66.72 -0.24 1.24 16 19 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 20 C -0.15 -1.29 6.34 -24.74 -0.16 -1.44 16 21 C 0.10 0.86 5.55 -2.98 -0.02 0.84 16 22 N -0.60 -5.92 2.82 -165.51 -0.47 -6.39 16 23 C 0.62 6.72 6.35 -12.48 -0.08 6.64 16 24 O -0.51 -6.31 14.18 5.29 0.08 -6.23 16 25 C -0.08 -0.80 7.09 -36.31 -0.26 -1.05 16 26 C -0.15 -1.23 10.95 -38.94 -0.43 -1.66 16 27 C -0.02 -0.12 12.16 -17.12 -0.21 -0.33 16 28 N -0.35 -3.54 12.04 30.46 0.37 -3.17 16 29 O 0.12 1.23 9.04 15.54 0.14 1.37 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.02 0.60 6.91 -51.93 -0.36 0.24 16 32 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 33 H 0.07 1.21 5.96 -51.93 -0.31 0.90 16 34 H 0.08 1.73 7.32 -51.93 -0.38 1.35 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.21 6.13 -51.93 -0.32 0.89 16 37 H 0.10 1.09 6.27 -51.93 -0.33 0.76 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.02 5.92 -51.93 -0.31 0.71 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 42 H 0.08 0.78 7.76 -51.93 -0.40 0.38 16 43 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -35.97 350.95 -7.12 -43.09 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.75 Total: -1.50 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.56 Total: -0.77 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.26 Total: -46.49 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.30 Total: -17.00 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.97 -7.12 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268883075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.173 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds