Wall clock time and date at job start Tue Mar 31 2020 17:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48500 * 109.46959 * 270.00163 * 3 2 1 5 5 H 1.48499 * 109.46863 * 29.99590 * 3 2 1 6 6 H 1.48498 * 109.47248 * 149.99714 * 3 2 1 7 7 C 1.37877 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99724 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00505 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47309 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47023 * 184.95915 * 10 9 7 12 12 C 1.33119 * 117.26697 * 84.58894 * 11 10 9 13 13 O 1.21285 * 118.57532 * 359.86950 * 12 11 10 14 14 C 1.50314 * 122.85547 * 179.84287 * 12 11 10 15 15 C 1.52987 * 109.18426 * 21.47454 * 14 12 11 16 16 C 1.52310 * 109.48327 * 308.13931 * 15 14 12 17 17 H 1.09004 * 109.99040 * 185.20520 * 16 15 14 18 18 C 1.45412 * 117.26704 * 264.61418 * 11 10 9 19 19 H 1.09006 * 112.02545 * 64.17028 * 18 11 10 20 20 C 1.55420 * 108.17225 * 300.83432 * 18 11 10 21 21 C 1.54348 * 103.08182 * 277.09665 * 20 18 11 22 22 N 1.46915 * 110.85104 * 306.86059 * 16 15 14 23 23 C 1.34773 * 125.73315 * 323.06740 * 22 16 15 24 24 O 1.21583 * 120.00119 * 359.97438 * 23 22 16 25 25 C 1.47515 * 119.99741 * 180.28046 * 23 22 16 26 26 C 1.36827 * 126.94315 * 179.72726 * 25 23 22 27 27 C 1.41268 * 103.84457 * 179.97438 * 26 25 23 28 28 N 1.30123 * 106.58946 * 0.02562 * 27 26 25 29 29 O 1.20889 * 111.98706 * 359.69570 * 28 27 26 30 30 H 0.96997 * 119.99628 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46888 * 60.00231 * 9 7 2 32 32 H 1.08997 * 109.47319 * 300.00413 * 9 7 2 33 33 H 1.09000 * 109.46867 * 64.96413 * 10 9 7 34 34 H 1.08995 * 109.47305 * 304.96178 * 10 9 7 35 35 H 1.09002 * 109.51857 * 141.38243 * 14 12 11 36 36 H 1.08994 * 109.52205 * 261.56342 * 14 12 11 37 37 H 1.08999 * 109.46309 * 188.13746 * 15 14 12 38 38 H 1.08996 * 109.46695 * 68.14903 * 15 14 12 39 39 H 1.08997 * 110.70684 * 35.66641 * 20 18 11 40 40 H 1.09000 * 110.70891 * 158.91482 * 20 18 11 41 41 H 1.08999 * 109.99741 * 218.72150 * 21 20 18 42 42 H 1.08997 * 109.78151 * 97.51937 * 21 20 18 43 43 H 1.07994 * 128.07451 * 0.02562 * 26 25 23 44 44 H 1.07998 * 126.69951 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0014 11 7 5.4817 -2.6383 0.1202 12 6 5.9938 -2.5601 1.3464 13 8 5.2340 -2.4900 2.2891 14 6 7.4730 -2.5554 1.6136 15 6 8.2113 -2.1175 0.3472 16 6 7.7452 -2.9633 -0.8307 17 1 8.3309 -2.7218 -1.7177 18 6 6.2502 -2.7247 -1.1112 19 1 6.0984 -1.8543 -1.7497 20 6 5.8556 -4.0409 -1.8375 21 6 6.7307 -5.1021 -1.1373 22 7 7.8680 -4.3955 -0.5270 23 6 8.8590 -4.9668 0.1856 24 8 9.7549 -4.2813 0.6392 25 6 8.8603 -6.4249 0.4096 26 6 9.7917 -7.1497 1.1019 27 6 9.3209 -8.4786 1.0121 28 7 8.2207 -8.4369 0.3186 29 8 7.9423 -7.3106 -0.0212 30 1 -0.4849 0.8401 -0.0004 31 1 3.8752 -0.6798 0.8895 32 1 3.8746 -0.6809 -0.8904 33 1 3.7322 -3.1252 -0.9291 34 1 3.5877 -3.1746 0.8443 35 1 7.6947 -1.8600 2.4232 36 1 7.7955 -3.5579 1.8948 37 1 9.2840 -2.2502 0.4878 38 1 7.9983 -1.0674 0.1473 39 1 4.7967 -4.2567 -1.6959 40 1 6.1001 -3.9840 -2.8982 41 1 7.0925 -5.8270 -1.8664 42 1 6.1506 -5.6074 -0.3650 43 1 10.6791 -6.7897 1.6012 44 1 9.7838 -9.3574 1.4362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268883075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:39 Heat of formation + Delta-G solvation = -8.811961 kcal Electronic energy + Delta-G solvation = -29992.126047 eV Core-core repulsion = 25912.601676 eV Total energy + Delta-G solvation = -4079.524371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.05821 -42.50874 -40.51605 -38.78910 -36.57650 -35.30516 -34.94794 -34.71925 -33.16270 -32.38867 -31.13506 -29.58166 -27.08333 -26.16686 -24.78098 -24.53784 -23.68594 -22.91093 -22.45736 -21.25063 -19.45156 -19.14364 -18.83968 -18.76704 -17.87745 -17.68292 -17.23676 -16.90090 -16.71545 -16.44116 -15.89670 -15.36555 -15.26978 -14.88348 -14.85406 -14.68640 -14.60886 -14.48751 -14.29049 -13.92710 -13.76688 -13.60534 -13.02845 -12.88074 -12.77450 -12.66350 -12.34467 -12.20217 -12.05781 -12.03984 -11.89745 -11.62144 -11.60995 -11.48347 -11.30111 -10.86739 -10.76815 -10.56220 -9.83871 -9.67188 -8.30349 -6.34117 -0.30233 1.09022 1.31350 1.36947 1.37958 1.48105 1.63628 1.83166 1.98465 2.03719 2.35012 3.05208 3.08121 3.27449 3.39383 3.51123 3.57552 3.75528 3.88403 3.95842 4.03225 4.08105 4.22296 4.28208 4.36162 4.49617 4.53722 4.61795 4.67559 4.71218 4.78905 4.83254 4.87512 4.94133 4.96344 5.05916 5.11342 5.20949 5.26638 5.38984 5.54068 5.68721 6.14190 6.24551 6.55874 6.68074 6.72737 7.02108 7.21040 7.30572 8.86279 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.003271 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.929720 B = 8558.736288 C = 8961.502786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.252 1.252 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.036 0.964 9 C -0.010 4.010 10 C 0.130 3.870 11 N -0.586 5.586 12 C 0.504 3.496 13 O -0.604 6.604 14 C -0.118 4.118 15 C -0.128 4.128 16 C 0.136 3.864 17 H 0.138 0.862 18 C 0.121 3.879 19 H 0.133 0.867 20 C -0.140 4.140 21 C 0.098 3.902 22 N -0.599 5.599 23 C 0.619 3.381 24 O -0.527 6.527 25 C -0.100 4.100 26 C -0.146 4.146 27 C -0.004 4.004 28 N -0.373 5.373 29 O 0.106 5.894 30 H 0.267 0.733 31 H -0.004 1.004 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.204 0.796 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.112 -12.908 -6.640 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.176 1.176 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.055 0.945 9 C -0.049 4.049 10 C 0.008 3.992 11 N -0.317 5.317 12 C 0.293 3.707 13 O -0.486 6.486 14 C -0.158 4.158 15 C -0.165 4.165 16 C 0.034 3.966 17 H 0.156 0.844 18 C 0.018 3.982 19 H 0.150 0.850 20 C -0.178 4.178 21 C -0.024 4.024 22 N -0.332 5.332 23 C 0.406 3.594 24 O -0.405 6.405 25 C -0.166 4.166 26 C -0.168 4.168 27 C -0.181 4.181 28 N -0.075 5.075 29 O 0.035 5.965 30 H 0.075 0.925 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.221 0.779 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 25.276 -13.378 -6.314 29.287 hybrid contribution -0.034 0.896 1.001 1.344 sum 25.242 -12.482 -5.313 28.656 Atomic orbital electron populations 1.70058 1.08157 1.28132 1.52593 1.25941 0.95579 1.03338 0.94125 0.85667 0.78884 0.78492 0.79610 1.17589 1.21298 1.18710 1.21306 0.91567 0.93336 1.50369 0.94536 1.19669 0.94172 0.94973 0.96054 1.21331 0.78483 0.97594 1.01818 1.47296 1.07504 1.70850 1.06010 1.20718 0.92178 0.75386 0.82376 1.90732 1.61977 1.52398 1.43526 1.21509 0.89027 1.04031 1.01251 1.21761 1.02648 1.00392 0.91744 1.21977 0.95072 0.79324 1.00250 0.84411 1.22476 0.89796 1.00784 0.85128 0.84973 1.23302 1.00894 0.91817 1.01774 1.22307 0.86435 0.95940 0.97677 1.48360 1.24059 1.09296 1.51449 1.16141 0.81663 0.83204 0.78378 1.90833 1.36897 1.61286 1.51485 1.24304 0.93970 0.93044 1.05273 1.23404 1.01645 0.91855 0.99921 1.25754 0.92698 1.00363 0.99292 1.73790 1.18277 1.00184 1.15237 1.85047 1.42044 1.11325 1.58046 0.92462 0.98517 0.94951 0.88146 0.93925 0.88453 0.89683 0.87571 0.88825 0.89218 0.85227 0.88118 0.92502 0.77901 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 2 C 0.01 0.43 5.47 84.65 0.46 0.89 16 3 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 4 H -0.25 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.65 16 7 C -0.53 -30.79 9.66 25.60 0.25 -30.54 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.49 4.27 29.85 0.13 -0.36 16 10 C 0.13 5.06 4.73 86.38 0.41 5.47 16 11 N -0.59 -17.95 2.52 -796.81 -2.01 -19.96 16 12 C 0.50 17.93 7.34 87.79 0.64 18.57 16 13 O -0.60 -28.71 16.01 -3.04 -0.05 -28.76 16 14 C -0.12 -3.17 5.59 29.72 0.17 -3.00 16 15 C -0.13 -2.43 4.95 30.36 0.15 -2.28 16 16 C 0.14 2.13 3.27 45.01 0.15 2.27 16 17 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 18 C 0.12 2.27 3.66 46.36 0.17 2.44 16 19 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 20 C -0.14 -1.98 6.34 31.88 0.20 -1.78 16 21 C 0.10 1.53 5.55 86.71 0.48 2.02 16 22 N -0.60 -10.49 2.82 -795.80 -2.24 -12.73 16 23 C 0.62 12.39 6.35 86.69 0.55 12.94 16 24 O -0.53 -12.14 14.18 -3.98 -0.06 -12.20 16 25 C -0.10 -1.86 7.09 24.39 0.17 -1.68 16 26 C -0.15 -2.08 10.95 22.68 0.25 -1.83 16 27 C 0.00 -0.05 12.16 85.69 1.04 0.99 16 28 N -0.37 -7.25 12.04 -58.54 -0.70 -7.95 16 29 O 0.11 2.10 9.04 65.80 0.59 2.69 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.00 -0.19 6.91 -2.38 -0.02 -0.21 16 32 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 33 H 0.10 3.31 5.96 -2.39 -0.01 3.30 16 34 H 0.04 1.97 7.32 -2.39 -0.02 1.95 16 35 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 2.34 6.13 -2.39 -0.01 2.32 16 37 H 0.11 2.00 6.27 -2.39 -0.01 1.99 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.58 5.92 -2.39 -0.01 1.56 16 40 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 1.18 7.82 -2.39 -0.02 1.16 16 42 H 0.06 1.13 7.76 -2.39 -0.02 1.12 16 43 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 44 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -82.92 350.95 3.92 -78.99 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.98 Total: 8.46 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.22 Total: 4.12 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.65 Total: -100.52 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: 0.49 Total: -38.27 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -82.92 3.92 -78.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268883075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.183 kcal (2) G-P(sol) polarization free energy of solvation -82.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds