Wall clock time and date at job start Tue Mar 31 2020 18:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.38521 * 2 1 4 4 N 1.46500 * 109.47312 * 299.21941 * 3 2 1 5 5 C 1.36937 * 119.99664 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99497 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99711 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47023 * 90.00392 * 9 7 5 11 11 H 1.48500 * 109.46717 * 210.00296 * 9 7 5 12 12 H 1.48503 * 109.47018 * 330.00218 * 9 7 5 13 13 C 1.54283 * 110.34271 * 237.77050 * 2 1 3 14 14 C 1.54391 * 105.05272 * 241.07368 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 C 1.53007 * 109.47283 * 179.97438 * 18 16 15 20 20 N 1.46499 * 109.46900 * 179.97438 * 19 18 16 21 21 S 1.65603 * 119.99306 * 164.99999 * 20 19 18 22 22 C 1.81393 * 104.45194 * 65.00260 * 21 20 19 23 23 O 1.42104 * 104.27407 * 181.07084 * 21 20 19 24 24 O 1.42097 * 104.28195 * 308.92753 * 21 20 19 25 25 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 26 26 H 1.09004 * 109.46749 * 180.77405 * 1 2 3 27 27 H 1.09000 * 109.46913 * 300.77477 * 1 2 3 28 28 H 1.08993 * 109.46943 * 60.77923 * 1 2 3 29 29 H 1.08999 * 109.47461 * 59.22741 * 3 2 1 30 30 H 1.09004 * 109.47274 * 179.21933 * 3 2 1 31 31 H 0.96997 * 119.99823 * 0.02562 * 4 3 2 32 32 H 0.97002 * 119.99715 * 179.97438 * 8 7 5 33 33 H 1.09002 * 110.34406 * 359.97438 * 13 2 1 34 34 H 1.09000 * 110.34365 * 122.15120 * 13 2 1 35 35 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 36 36 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 37 37 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 38 38 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 39 39 H 1.08997 * 109.46703 * 299.99981 * 19 18 16 40 40 H 1.08998 * 109.46788 * 59.99471 * 19 18 16 41 41 H 0.96998 * 120.00260 * 345.00385 * 20 19 18 42 42 H 1.09001 * 109.47254 * 59.99568 * 22 21 20 43 43 H 1.08997 * 109.47663 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47239 * 299.99971 * 22 21 20 45 45 H 1.09000 * 110.40949 * 201.69443 * 25 15 14 46 46 H 1.08998 * 110.40973 * 79.26010 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6011 2.1268 -1.2055 5 6 1.9552 3.4315 -1.4235 6 1 2.5753 3.9498 -0.7070 7 6 1.5179 4.0877 -2.5660 8 7 0.7627 3.4559 -3.4393 9 14 2.0015 5.8673 -2.8638 10 1 3.2753 5.9132 -3.6257 11 1 0.9345 6.5465 -3.6419 12 1 2.1791 6.5567 -1.5606 13 6 2.0664 -0.7715 -1.2237 14 6 2.8820 -1.9422 -0.6337 15 7 3.2665 -1.4817 0.7227 16 6 4.4424 -1.6664 1.3546 17 8 4.6061 -1.2251 2.4723 18 6 5.5537 -2.4223 0.6727 19 6 6.7693 -2.4882 1.5996 20 7 7.8493 -3.2235 0.9369 21 16 9.3933 -3.1391 1.5296 22 6 9.2952 -3.9243 3.1618 23 8 10.1557 -3.9394 0.6363 24 8 9.6430 -1.7464 1.6604 25 6 2.0668 -0.7721 1.2245 26 1 -0.3633 -1.0276 0.0139 27 1 -0.3633 0.5258 0.8830 28 1 -0.3633 0.5017 -0.8968 29 1 1.6967 1.9579 0.8829 30 1 3.1528 1.4168 0.0140 31 1 1.0439 1.6615 -1.8487 32 1 0.4569 3.9146 -4.2375 33 1 1.2399 -1.1509 -1.8246 34 1 2.7081 -0.1282 -1.8258 35 1 2.2668 -2.8397 -0.5697 36 1 3.7688 -2.1305 -1.2387 37 1 5.2172 -3.4330 0.4418 38 1 5.8281 -1.9109 -0.2499 39 1 7.1055 -1.4773 1.8301 40 1 6.4952 -2.9992 2.5225 41 1 7.6600 -3.7596 0.1510 42 1 8.9581 -4.9548 3.0496 43 1 10.2794 -3.9134 3.6301 44 1 8.5892 -3.3771 3.7864 45 1 2.3401 -0.0794 2.0206 46 1 1.3235 -1.4860 1.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484097025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:14 Heat of formation + Delta-G solvation = -94.587386 kcal Electronic energy + Delta-G solvation = -26927.307191 eV Core-core repulsion = 22979.507270 eV Total energy + Delta-G solvation = -3947.799921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23378 -38.28647 -37.43744 -36.31035 -35.91873 -34.79736 -32.78717 -30.82064 -30.14006 -29.87943 -29.46813 -26.57929 -25.64060 -23.77263 -22.90157 -22.37318 -20.06906 -19.28644 -18.67891 -17.88911 -17.35352 -17.10540 -16.72526 -16.30282 -16.20805 -15.44426 -15.21676 -14.96995 -14.49380 -14.16683 -13.79551 -13.73067 -13.61147 -13.46967 -13.39037 -12.91195 -12.66719 -12.60114 -12.44812 -12.35982 -12.29269 -12.08238 -12.05109 -11.91620 -11.84545 -11.39439 -11.23678 -11.00572 -10.80925 -10.64078 -10.36968 -10.24431 -9.98135 -9.91668 -9.85250 -9.65361 -8.87475 -8.72356 -6.91687 -5.77403 -3.05085 -0.11122 2.27859 2.54858 2.93227 3.44114 3.44344 3.49998 3.51314 3.82504 4.21006 4.37382 4.39912 4.56384 4.61017 4.69421 4.74049 4.88106 5.06871 5.09024 5.12157 5.23687 5.25375 5.40571 5.45982 5.51260 5.60201 5.67218 5.72542 5.80199 5.87679 5.92944 6.08331 6.21910 6.25313 6.41528 6.54750 6.55170 6.66044 6.78972 6.86299 7.51920 7.71443 8.06737 8.42174 9.53840 10.10817 10.46335 11.45533 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.002442 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.102859 B =11465.042155 C =12709.991229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C 0.168 3.832 4 N -0.729 5.729 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.126 4.126 14 C 0.100 3.900 15 N -0.619 5.619 16 C 0.537 3.463 17 O -0.545 6.545 18 C -0.144 4.144 19 C 0.128 3.872 20 N -1.122 6.122 21 S 2.617 3.383 22 C -0.674 4.674 23 O -0.961 6.961 24 O -0.952 6.952 25 C 0.116 3.884 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.418 0.582 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.083 0.917 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 -21.457 10.568 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.082 4.082 3 C 0.040 3.960 4 N -0.374 5.374 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.164 4.164 14 C -0.023 4.023 15 N -0.352 5.352 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.185 4.185 19 C 0.002 3.998 20 N -0.882 5.882 21 S 2.709 3.291 22 C -0.824 4.824 23 O -0.951 6.951 24 O -0.942 6.942 25 C -0.007 4.007 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.219 0.781 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.252 0.748 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.102 0.898 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.460 -20.576 10.995 25.567 hybrid contribution -0.517 0.270 -0.354 0.682 sum 9.943 -20.307 10.641 24.989 Atomic orbital electron populations 1.21784 0.93268 1.00612 1.03282 1.21690 0.96256 0.96579 0.93640 1.20661 0.96015 0.88374 0.90929 1.42354 1.61640 1.11347 1.22013 1.19231 1.25500 0.88285 1.03795 0.91309 1.24707 1.00561 0.98329 0.97360 1.69648 1.39950 1.36383 1.12391 0.86198 0.77506 0.84870 0.77690 1.21754 1.21810 1.20789 1.22660 1.00174 0.96041 0.97532 1.22540 0.99403 0.97727 0.82643 1.49004 1.13059 1.55331 1.17815 1.19935 0.81746 0.80077 0.85697 1.90722 1.80875 1.51238 1.19426 1.21759 0.93703 1.02283 1.00803 1.21060 0.86173 0.97890 0.94697 1.55590 1.26846 1.63366 1.42354 1.04644 0.72647 0.75086 0.76744 1.30529 1.11751 1.14810 1.25282 1.93624 1.68382 1.71835 1.61302 1.93646 1.83353 1.30326 1.86881 1.22451 0.85625 0.95323 0.97292 0.93367 0.92650 0.90950 0.96297 0.96367 0.78118 0.93573 0.90292 0.89407 0.91108 0.90420 0.88210 0.87673 0.88973 0.90865 0.74803 0.85290 0.85331 0.85167 0.89807 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.07 37.16 0.30 -1.56 16 2 C -0.08 -1.19 0.73 -153.11 -0.11 -1.30 16 3 C 0.17 3.33 4.90 -4.04 -0.02 3.31 16 4 N -0.73 -17.77 4.92 -59.91 -0.29 -18.07 16 5 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 9 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.13 -1.68 5.78 -25.33 -0.15 -1.82 16 14 C 0.10 1.00 6.92 -2.31 -0.02 0.98 16 15 N -0.62 -7.54 3.32 -169.17 -0.56 -8.10 16 16 C 0.54 6.69 7.91 -10.99 -0.09 6.60 16 17 O -0.54 -8.64 16.25 5.56 0.09 -8.55 16 18 C -0.14 -1.17 4.82 -27.88 -0.13 -1.30 16 19 C 0.13 1.02 5.42 -4.04 -0.02 1.00 16 20 N -1.12 -6.99 5.89 -10.61 -0.06 -7.06 16 21 S 2.62 19.34 6.10 -107.50 -0.66 18.68 16 22 C -0.67 -2.65 10.89 101.05 1.10 -1.55 16 23 O -0.96 -10.10 18.08 -57.54 -1.04 -11.14 16 24 O -0.95 -11.40 17.50 -57.54 -1.01 -12.41 16 25 C 0.12 1.52 6.14 -2.41 -0.01 1.51 16 26 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.20 7.01 -51.93 -0.36 0.84 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.38 9.63 6.28 -40.82 -0.26 9.37 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.08 0.97 7.71 -51.93 -0.40 0.57 16 34 H 0.09 1.43 7.48 -51.93 -0.39 1.05 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.64 7.31 -51.93 -0.38 0.26 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.82 7.95 -51.93 -0.41 0.40 16 39 H 0.09 0.92 7.65 -51.93 -0.40 0.53 16 40 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.42 1.85 8.62 -34.48 -0.30 1.55 16 42 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 43 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.08 1.24 7.60 -51.93 -0.39 0.85 16 46 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -38.10 386.02 -8.88 -46.98 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.47 Total: 4.73 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 0.60 Total: -1.36 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.19 Total: -60.20 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.96 Total: -32.10 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 19.34 SS G_CDS: -0.66 Total: 18.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.10 -8.88 -46.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484097025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.611 kcal (2) G-P(sol) polarization free energy of solvation -38.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds