Wall clock time and date at job start Tue Mar 31 2020 18:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.38521 * 2 1 4 4 N 1.46500 * 109.47312 * 299.21941 * 3 2 1 5 5 C 1.36937 * 119.99664 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99497 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99711 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47023 * 90.00392 * 9 7 5 11 11 H 1.48500 * 109.46717 * 210.00296 * 9 7 5 12 12 H 1.48503 * 109.47018 * 330.00218 * 9 7 5 13 13 C 1.54283 * 110.34271 * 237.77050 * 2 1 3 14 14 C 1.54391 * 105.05272 * 241.07368 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 C 1.53007 * 109.47283 * 179.97438 * 18 16 15 20 20 N 1.46499 * 109.46900 * 179.97438 * 19 18 16 21 21 S 1.65603 * 119.99306 * 164.99999 * 20 19 18 22 22 C 1.81393 * 104.45194 * 65.00260 * 21 20 19 23 23 O 1.42104 * 104.27407 * 181.07084 * 21 20 19 24 24 O 1.42097 * 104.28195 * 308.92753 * 21 20 19 25 25 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 26 26 H 1.09004 * 109.46749 * 180.77405 * 1 2 3 27 27 H 1.09000 * 109.46913 * 300.77477 * 1 2 3 28 28 H 1.08993 * 109.46943 * 60.77923 * 1 2 3 29 29 H 1.08999 * 109.47461 * 59.22741 * 3 2 1 30 30 H 1.09004 * 109.47274 * 179.21933 * 3 2 1 31 31 H 0.96997 * 119.99823 * 0.02562 * 4 3 2 32 32 H 0.97002 * 119.99715 * 179.97438 * 8 7 5 33 33 H 1.09002 * 110.34406 * 359.97438 * 13 2 1 34 34 H 1.09000 * 110.34365 * 122.15120 * 13 2 1 35 35 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 36 36 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 37 37 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 38 38 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 39 39 H 1.08997 * 109.46703 * 299.99981 * 19 18 16 40 40 H 1.08998 * 109.46788 * 59.99471 * 19 18 16 41 41 H 0.96998 * 120.00260 * 345.00385 * 20 19 18 42 42 H 1.09001 * 109.47254 * 59.99568 * 22 21 20 43 43 H 1.08997 * 109.47663 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47239 * 299.99971 * 22 21 20 45 45 H 1.09000 * 110.40949 * 201.69443 * 25 15 14 46 46 H 1.08998 * 110.40973 * 79.26010 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6011 2.1268 -1.2055 5 6 1.9552 3.4315 -1.4235 6 1 2.5753 3.9498 -0.7070 7 6 1.5179 4.0877 -2.5660 8 7 0.7627 3.4559 -3.4393 9 14 2.0015 5.8673 -2.8638 10 1 3.2753 5.9132 -3.6257 11 1 0.9345 6.5465 -3.6419 12 1 2.1791 6.5567 -1.5606 13 6 2.0664 -0.7715 -1.2237 14 6 2.8820 -1.9422 -0.6337 15 7 3.2665 -1.4817 0.7227 16 6 4.4424 -1.6664 1.3546 17 8 4.6061 -1.2251 2.4723 18 6 5.5537 -2.4223 0.6727 19 6 6.7693 -2.4882 1.5996 20 7 7.8493 -3.2235 0.9369 21 16 9.3933 -3.1391 1.5296 22 6 9.2952 -3.9243 3.1618 23 8 10.1557 -3.9394 0.6363 24 8 9.6430 -1.7464 1.6604 25 6 2.0668 -0.7721 1.2245 26 1 -0.3633 -1.0276 0.0139 27 1 -0.3633 0.5258 0.8830 28 1 -0.3633 0.5017 -0.8968 29 1 1.6967 1.9579 0.8829 30 1 3.1528 1.4168 0.0140 31 1 1.0439 1.6615 -1.8487 32 1 0.4569 3.9146 -4.2375 33 1 1.2399 -1.1509 -1.8246 34 1 2.7081 -0.1282 -1.8258 35 1 2.2668 -2.8397 -0.5697 36 1 3.7688 -2.1305 -1.2387 37 1 5.2172 -3.4330 0.4418 38 1 5.8281 -1.9109 -0.2499 39 1 7.1055 -1.4773 1.8301 40 1 6.4952 -2.9992 2.5225 41 1 7.6600 -3.7596 0.1510 42 1 8.9581 -4.9548 3.0496 43 1 10.2794 -3.9134 3.6301 44 1 8.5892 -3.3771 3.7864 45 1 2.3401 -0.0794 2.0206 46 1 1.3235 -1.4860 1.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484097025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:14 Heat of formation + Delta-G solvation = -125.917264 kcal Electronic energy + Delta-G solvation = -26928.665757 eV Core-core repulsion = 22979.507270 eV Total energy + Delta-G solvation = -3949.158487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24281 -39.38567 -38.16684 -37.03431 -36.61071 -36.39395 -34.36262 -32.28071 -31.21678 -30.51616 -30.25108 -27.69528 -27.30002 -24.96712 -24.01647 -23.74757 -20.73571 -20.27263 -19.79432 -19.17479 -18.57326 -18.12349 -17.38273 -17.10383 -17.03760 -16.58912 -16.33318 -16.04410 -15.70524 -15.52920 -15.06364 -14.94587 -14.67716 -14.23895 -14.14835 -13.95636 -13.90746 -13.52719 -13.45001 -13.20585 -13.14170 -13.10372 -13.02892 -12.90765 -12.82954 -12.69011 -12.55297 -12.40921 -12.17412 -12.05602 -11.94930 -11.64704 -11.48393 -11.32438 -10.96659 -10.90021 -10.42472 -9.70183 -8.99670 -7.97069 -5.24237 -0.66142 1.45482 1.46341 1.54845 1.61093 1.68885 2.09277 2.53972 2.90462 3.28842 3.35588 3.41116 3.64590 3.73382 3.86555 3.89569 4.06542 4.12707 4.21340 4.26099 4.33851 4.39768 4.46785 4.51692 4.54362 4.69695 4.77785 4.80229 4.88950 4.91124 4.94893 4.96548 5.05657 5.09636 5.11226 5.22426 5.33406 5.44708 5.49829 5.56911 6.14045 6.26217 6.60208 7.12985 7.33662 8.08371 8.35789 9.25889 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.002442 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.102859 B =11465.042155 C =12709.991229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C 0.170 3.830 4 N -0.733 5.733 5 C -0.248 4.248 6 H 0.064 0.936 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.968 3.032 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.125 4.125 14 C 0.107 3.893 15 N -0.623 5.623 16 C 0.529 3.471 17 O -0.587 6.587 18 C -0.137 4.137 19 C 0.128 3.872 20 N -1.113 6.113 21 S 2.623 3.377 22 C -0.652 4.652 23 O -0.996 6.996 24 O -1.008 7.008 25 C 0.121 3.879 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.007 0.993 30 H -0.001 1.001 31 H 0.380 0.620 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.427 0.573 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.059 0.941 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 -24.192 11.206 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C 0.043 3.957 4 N -0.377 5.377 5 C -0.380 4.380 6 H 0.082 0.918 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.798 3.202 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.200 1.200 13 C -0.164 4.164 14 C -0.014 4.014 15 N -0.356 5.356 16 C 0.319 3.681 17 O -0.468 6.468 18 C -0.178 4.178 19 C 0.001 3.999 20 N -0.874 5.874 21 S 2.719 3.281 22 C -0.806 4.806 23 O -0.987 6.987 24 O -0.998 6.998 25 C -0.003 4.003 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.017 0.983 31 H 0.214 0.786 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.264 0.736 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.078 0.922 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.313 -23.317 11.590 28.007 hybrid contribution -0.473 1.110 -0.466 1.294 sum 9.840 -22.207 11.124 26.716 Atomic orbital electron populations 1.21722 0.92388 1.02581 1.01591 1.21578 0.96838 0.93486 0.95731 1.20723 0.94827 0.91565 0.88615 1.42450 1.61431 1.10620 1.23215 1.19539 1.24978 0.89794 1.03668 0.91794 1.25446 1.01097 1.02161 0.97375 1.69777 1.41104 1.37742 1.12722 0.85222 0.76996 0.80415 0.77614 1.21488 1.21727 1.20039 1.22601 1.00473 0.96685 0.96603 1.22681 1.00389 0.97071 0.81273 1.49139 1.12793 1.54994 1.18636 1.20711 0.82288 0.79718 0.85389 1.90700 1.81548 1.53050 1.21519 1.21800 0.92021 1.03805 1.00163 1.21003 0.86302 0.96921 0.95706 1.55272 1.25750 1.63300 1.43072 1.04164 0.72291 0.73767 0.77831 1.30321 1.13339 1.15704 1.21212 1.93573 1.69497 1.71988 1.63637 1.93580 1.84277 1.33956 1.88010 1.22349 0.86872 0.95540 0.95512 0.89542 0.93020 0.93883 0.97475 0.98262 0.78623 0.93865 0.88914 0.93108 0.87418 0.88266 0.84183 0.87282 0.91898 0.89047 0.73607 0.82661 0.83761 0.84017 0.92238 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.07 71.98 0.58 -2.81 16 2 C -0.08 -2.18 0.73 -51.27 -0.04 -2.22 16 3 C 0.17 6.98 4.90 86.38 0.42 7.41 16 4 N -0.73 -36.96 4.92 -343.44 -1.69 -38.65 16 5 C -0.25 -14.12 9.99 84.04 0.84 -13.28 16 6 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 8 N -0.96 -58.00 13.06 21.65 0.28 -57.72 16 9 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 C -0.13 -3.17 5.78 31.50 0.18 -2.99 16 14 C 0.11 1.78 6.92 86.50 0.60 2.38 16 15 N -0.62 -13.88 3.32 -807.53 -2.68 -16.56 16 16 C 0.53 12.39 7.91 87.66 0.69 13.08 16 17 O -0.59 -18.54 16.25 -3.02 -0.05 -18.59 16 18 C -0.14 -1.88 4.82 29.85 0.14 -1.74 16 19 C 0.13 1.84 5.42 86.38 0.47 2.31 16 20 N -1.11 -12.15 5.89 -187.49 -1.10 -13.26 16 21 S 2.62 37.11 6.10 -56.49 -0.34 36.77 16 22 C -0.65 -3.25 10.89 113.37 1.23 -2.01 16 23 O -1.00 -20.56 18.08 -127.65 -2.31 -22.87 16 24 O -1.01 -25.05 17.50 -127.65 -2.23 -27.28 16 25 C 0.12 3.00 6.14 86.53 0.53 3.53 16 26 H 0.09 1.68 8.12 -2.38 -0.02 1.66 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.42 7.01 -2.39 -0.02 1.41 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.38 19.66 6.28 -92.71 -0.58 19.08 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.09 2.09 7.71 -2.39 -0.02 2.07 16 34 H 0.05 1.67 7.48 -2.39 -0.02 1.65 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.26 7.31 -2.39 -0.02 1.24 16 37 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.11 1.46 7.95 -2.39 -0.02 1.44 16 39 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 40 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.43 2.88 8.62 -96.74 -0.83 2.04 16 42 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 1.78 7.60 -2.39 -0.02 1.76 16 46 H 0.10 1.95 7.85 -2.39 -0.02 1.93 16 Total: -1.00 -86.58 386.02 -2.40 -88.98 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.43 Total: 20.16 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.13 Total: 0.20 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.19 Total: -126.19 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -4.59 Total: -68.74 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 37.11 SS G_CDS: -0.34 Total: 36.77 kcal Total: -86.58 -2.40 -88.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484097025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.934 kcal (2) G-P(sol) polarization free energy of solvation -86.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds