Wall clock time and date at job start Tue Mar 31 2020 17:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48501 * 109.47204 * 270.00574 * 3 2 1 5 5 H 1.48502 * 109.47088 * 29.99901 * 3 2 1 6 6 H 1.48497 * 109.47343 * 150.00150 * 3 2 1 7 7 C 1.37873 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47392 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47371 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00020 * 179.97438 * 12 11 10 14 14 O 1.21583 * 119.99812 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99862 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00215 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47409 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47110 * 179.97438 * 17 16 15 19 19 H 1.09002 * 109.59858 * 54.67906 * 18 17 16 20 20 C 1.53179 * 109.60326 * 174.99920 * 18 17 16 21 21 N 1.46471 * 109.90070 * 182.39662 * 20 18 17 22 22 C 1.46477 * 112.46214 * 288.03691 * 21 20 18 23 23 C 1.53178 * 109.89686 * 71.96045 * 22 21 20 24 24 S 1.81810 * 108.68141 * 297.36332 * 23 22 21 25 25 O 1.42097 * 108.70806 * 298.06097 * 24 23 22 26 26 O 1.42109 * 108.82768 * 166.62100 * 24 23 22 27 27 H 0.97002 * 119.99734 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47195 * 60.00207 * 9 7 2 29 29 H 1.08998 * 109.47407 * 300.00281 * 9 7 2 30 30 H 1.09002 * 109.47279 * 60.00373 * 10 9 7 31 31 H 1.08995 * 109.47532 * 300.00133 * 10 9 7 32 32 H 1.09001 * 109.47177 * 60.00047 * 11 10 9 33 33 H 1.08998 * 109.47260 * 300.00221 * 11 10 9 34 34 H 0.97000 * 119.99793 * 0.02562 * 12 11 10 35 35 H 0.97006 * 120.00164 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.46812 * 59.99927 * 16 15 13 37 37 H 1.09003 * 109.46718 * 300.00181 * 16 15 13 38 38 H 1.08999 * 109.46873 * 59.99714 * 17 16 15 39 39 H 1.08998 * 109.46746 * 300.00189 * 17 16 15 40 40 H 1.09001 * 109.40010 * 62.26246 * 20 18 17 41 41 H 1.08997 * 109.39885 * 302.52589 * 20 18 17 42 42 H 1.00901 * 111.00061 * 53.06932 * 21 20 18 43 43 H 1.08994 * 109.40116 * 192.09582 * 22 21 20 44 44 H 1.09006 * 109.39659 * 311.83371 * 22 21 20 45 45 H 1.09004 * 109.59976 * 177.60520 * 23 22 21 46 46 H 1.09004 * 109.73985 * 57.20653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7877 -7.5934 -0.0020 15 7 2.8588 -8.3957 -0.0020 16 6 2.3706 -9.7769 -0.0026 17 6 3.5606 -10.7386 -0.0032 18 6 3.0506 -12.1811 -0.0033 19 1 2.3687 -12.3277 -0.8409 20 6 4.2345 -13.1448 -0.1296 21 7 3.7494 -14.5256 -0.1877 22 6 3.2416 -14.9952 1.1034 23 6 1.9064 -14.3134 1.4176 24 16 2.1861 -12.5225 1.5593 25 8 3.0815 -12.2850 2.6368 26 8 0.9295 -11.8591 1.5393 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8904 32 1 0.8540 -5.0445 -0.8914 33 1 0.8533 -5.0451 0.8885 34 1 3.3860 -5.9233 -0.0014 35 1 3.8126 -8.2184 -0.0023 36 1 1.7654 -9.9478 -0.8929 37 1 1.7647 -9.9485 0.8871 38 1 4.1662 -10.5677 0.8868 39 1 4.1661 -10.5668 -0.8931 40 1 4.8905 -13.0274 0.7330 41 1 4.7906 -12.9178 -1.0392 42 1 3.0543 -14.6345 -0.9109 43 1 3.0966 -16.0747 1.0645 44 1 3.9629 -14.7560 1.8849 45 1 1.5121 -14.6975 2.3584 46 1 1.1948 -14.5101 0.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:03 Heat of formation + Delta-G solvation = -110.650011 kcal Electronic energy + Delta-G solvation = -26149.166749 eV Core-core repulsion = 22200.670300 eV Total energy + Delta-G solvation = -3948.496449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.84881 -38.83573 -37.47938 -36.72610 -36.17264 -35.19060 -33.62983 -33.17240 -31.25508 -30.58354 -28.15808 -26.46331 -24.37735 -23.05919 -22.96124 -22.35640 -20.82848 -20.36195 -19.53913 -18.09704 -17.71541 -17.52410 -16.76279 -16.37876 -16.15536 -15.72551 -15.64909 -15.42948 -14.97306 -14.74558 -14.51878 -14.28966 -14.07744 -13.93572 -13.61843 -13.43667 -13.09082 -12.74332 -12.61407 -12.53829 -12.35216 -12.25687 -12.01511 -11.94122 -11.77443 -11.59982 -11.38557 -10.88527 -10.69387 -10.64146 -10.57245 -10.09291 -9.82845 -9.52738 -9.41132 -9.21954 -9.09954 -8.58350 -8.34787 -5.99404 -4.02468 -0.64542 2.03815 2.68729 3.00589 3.26632 3.32278 3.32970 3.38605 3.39888 3.41496 3.55474 3.88998 4.02808 4.12730 4.23715 4.42724 4.43692 4.48084 4.53984 4.57740 4.84341 4.92063 5.05730 5.06229 5.17008 5.36234 5.48221 5.58783 5.75665 5.85433 5.98766 6.21918 6.36737 6.37805 6.56239 6.66005 6.82474 7.05456 7.07766 7.66705 7.79823 7.99683 8.16234 8.40520 8.77565 9.04241 9.61484 11.11848 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.001650 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.673534 B =16967.150623 C =17238.505919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.741 5.741 13 C 0.699 3.301 14 O -0.587 6.587 15 N -0.751 5.751 16 C 0.115 3.885 17 C -0.114 4.114 18 C -0.602 4.602 19 H 0.143 0.857 20 C 0.073 3.927 21 N -0.689 5.689 22 C 0.067 3.933 23 C -0.652 4.652 24 S 2.406 3.594 25 O -0.927 6.927 26 O -0.922 6.922 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.353 0.647 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.142 0.858 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -35.362 -0.838 36.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.398 3.602 14 O -0.465 6.465 15 N -0.408 5.408 16 C -0.010 4.010 17 C -0.153 4.153 18 C -0.713 4.713 19 H 0.161 0.839 20 C -0.058 4.058 21 N -0.318 5.318 22 C -0.064 4.064 23 C -0.782 4.782 24 S 2.586 3.414 25 O -0.924 6.924 26 O -0.919 6.919 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.229 0.771 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.174 0.826 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.161 0.839 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.875 -35.135 -0.051 36.497 hybrid contribution 0.439 1.038 -0.648 1.301 sum 10.314 -34.097 -0.699 35.630 Atomic orbital electron populations 1.69974 1.06043 1.26652 1.50558 1.25036 0.94864 0.99296 0.95322 0.86575 0.79779 0.83450 0.78046 1.20696 1.21219 1.19928 1.21204 0.92981 0.90956 1.50902 0.92658 1.19034 0.93879 0.90801 0.97733 1.21887 0.99784 0.93318 1.00813 1.21528 0.91309 0.84096 1.01966 1.45374 1.10465 1.04359 1.79336 1.16005 0.85286 0.80783 0.78110 1.90946 1.14044 1.84031 1.57439 1.44952 1.09009 1.04881 1.81983 1.21489 0.95379 0.80006 1.04107 1.21543 0.98950 0.88876 1.05926 1.30862 1.12522 1.04926 1.23035 0.83854 1.22039 0.93894 0.83524 1.06343 1.60007 1.43787 1.21048 1.06925 1.21917 0.90615 1.01863 0.91957 1.31094 1.08656 1.25908 1.12584 1.08730 0.76475 0.78244 0.77967 1.93609 1.65950 1.83601 1.49225 1.93677 1.41068 1.70824 1.86325 0.92945 0.96227 0.96197 0.92742 0.92789 0.91927 0.91882 0.77306 0.77051 0.90648 0.90481 0.89122 0.88250 0.88427 0.87706 0.82649 0.87926 0.88490 0.83948 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 11 C 0.13 2.48 5.67 -4.04 -0.02 2.46 16 12 N -0.74 -11.19 5.56 -65.23 -0.36 -11.55 16 13 C 0.70 11.35 8.57 -86.92 -0.74 10.61 16 14 O -0.59 -12.37 16.34 5.29 0.09 -12.28 16 15 N -0.75 -8.48 5.56 -65.22 -0.36 -8.84 16 16 C 0.12 1.19 5.37 -4.04 -0.02 1.17 16 17 C -0.11 -0.63 4.79 -26.73 -0.13 -0.76 16 18 C -0.60 -2.43 2.57 -26.64 -0.07 -2.50 16 19 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 20 C 0.07 0.19 5.70 -3.97 -0.02 0.17 16 21 N -0.69 -1.69 6.71 -114.21 -0.77 -2.46 16 22 C 0.07 0.17 6.41 -3.96 -0.03 0.15 16 23 C -0.65 -2.02 6.49 37.25 0.24 -1.78 16 24 S 2.41 16.82 4.31 -107.50 -0.46 16.35 16 25 O -0.93 -9.33 17.93 -57.81 -1.04 -10.37 16 26 O -0.92 -10.71 16.12 -57.81 -0.93 -11.64 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.39 4.62 8.49 -40.82 -0.35 4.27 16 35 H 0.40 2.99 8.49 -40.82 -0.35 2.64 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.00 5.84 -51.93 -0.30 0.70 16 38 H 0.09 0.48 8.00 -51.93 -0.42 0.06 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.28 7.93 -51.93 -0.41 -0.13 16 41 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.35 0.30 8.67 -39.29 -0.34 -0.04 16 43 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.10 0.27 7.93 -51.93 -0.41 -0.14 16 45 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -40.27 384.30 -11.43 -51.69 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.61 Total: -0.94 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.48 Total: -6.08 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.76 Total: -49.19 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.88 Total: -34.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 16.82 SS G_CDS: -0.46 Total: 16.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.27 -11.43 -51.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.957 kcal (2) G-P(sol) polarization free energy of solvation -40.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds