Wall clock time and date at job start Tue Mar 31 2020 17:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48501 * 109.47204 * 270.00574 * 3 2 1 5 5 H 1.48502 * 109.47088 * 29.99901 * 3 2 1 6 6 H 1.48497 * 109.47343 * 150.00150 * 3 2 1 7 7 C 1.37873 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47392 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47371 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00020 * 179.97438 * 12 11 10 14 14 O 1.21583 * 119.99812 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99862 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00215 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47409 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47110 * 179.97438 * 17 16 15 19 19 H 1.09002 * 109.59858 * 54.67906 * 18 17 16 20 20 C 1.53179 * 109.60326 * 174.99920 * 18 17 16 21 21 N 1.46471 * 109.90070 * 182.39662 * 20 18 17 22 22 C 1.46477 * 112.46214 * 288.03691 * 21 20 18 23 23 C 1.53178 * 109.89686 * 71.96045 * 22 21 20 24 24 S 1.81810 * 108.68141 * 297.36332 * 23 22 21 25 25 O 1.42097 * 108.70806 * 298.06097 * 24 23 22 26 26 O 1.42109 * 108.82768 * 166.62100 * 24 23 22 27 27 H 0.97002 * 119.99734 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47195 * 60.00207 * 9 7 2 29 29 H 1.08998 * 109.47407 * 300.00281 * 9 7 2 30 30 H 1.09002 * 109.47279 * 60.00373 * 10 9 7 31 31 H 1.08995 * 109.47532 * 300.00133 * 10 9 7 32 32 H 1.09001 * 109.47177 * 60.00047 * 11 10 9 33 33 H 1.08998 * 109.47260 * 300.00221 * 11 10 9 34 34 H 0.97000 * 119.99793 * 0.02562 * 12 11 10 35 35 H 0.97006 * 120.00164 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.46812 * 59.99927 * 16 15 13 37 37 H 1.09003 * 109.46718 * 300.00181 * 16 15 13 38 38 H 1.08999 * 109.46873 * 59.99714 * 17 16 15 39 39 H 1.08998 * 109.46746 * 300.00189 * 17 16 15 40 40 H 1.09001 * 109.40010 * 62.26246 * 20 18 17 41 41 H 1.08997 * 109.39885 * 302.52589 * 20 18 17 42 42 H 1.00901 * 111.00061 * 53.06932 * 21 20 18 43 43 H 1.08994 * 109.40116 * 192.09582 * 22 21 20 44 44 H 1.09006 * 109.39659 * 311.83371 * 22 21 20 45 45 H 1.09004 * 109.59976 * 177.60520 * 23 22 21 46 46 H 1.09004 * 109.73985 * 57.20653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7877 -7.5934 -0.0020 15 7 2.8588 -8.3957 -0.0020 16 6 2.3706 -9.7769 -0.0026 17 6 3.5606 -10.7386 -0.0032 18 6 3.0506 -12.1811 -0.0033 19 1 2.3687 -12.3277 -0.8409 20 6 4.2345 -13.1448 -0.1296 21 7 3.7494 -14.5256 -0.1877 22 6 3.2416 -14.9952 1.1034 23 6 1.9064 -14.3134 1.4176 24 16 2.1861 -12.5225 1.5593 25 8 3.0815 -12.2850 2.6368 26 8 0.9295 -11.8591 1.5393 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8904 32 1 0.8540 -5.0445 -0.8914 33 1 0.8533 -5.0451 0.8885 34 1 3.3860 -5.9233 -0.0014 35 1 3.8126 -8.2184 -0.0023 36 1 1.7654 -9.9478 -0.8929 37 1 1.7647 -9.9485 0.8871 38 1 4.1662 -10.5677 0.8868 39 1 4.1661 -10.5668 -0.8931 40 1 4.8905 -13.0274 0.7330 41 1 4.7906 -12.9178 -1.0392 42 1 3.0543 -14.6345 -0.9109 43 1 3.0966 -16.0747 1.0645 44 1 3.9629 -14.7560 1.8849 45 1 1.5121 -14.6975 2.3584 46 1 1.1948 -14.5101 0.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:02 Heat of formation + Delta-G solvation = -146.685014 kcal Electronic energy + Delta-G solvation = -26150.729344 eV Core-core repulsion = 22200.670300 eV Total energy + Delta-G solvation = -3950.059044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10821 -39.15539 -38.12642 -37.45219 -37.10617 -36.52084 -35.21134 -34.32557 -32.89334 -31.10987 -29.07126 -27.97111 -25.27339 -24.38485 -23.29824 -22.98811 -22.32412 -21.89967 -20.05803 -19.29674 -18.54221 -18.18454 -17.99974 -17.48413 -16.93188 -16.89113 -16.51784 -16.18416 -15.93409 -15.85376 -15.47649 -15.32473 -15.14616 -14.95533 -14.29002 -14.26154 -13.87900 -13.72464 -13.68350 -13.50958 -13.20794 -13.18476 -13.10532 -12.75556 -12.67631 -12.54566 -12.47627 -12.37778 -12.35648 -11.82222 -11.69943 -11.66987 -11.34619 -11.16604 -10.97992 -10.54918 -10.46223 -9.83055 -9.72476 -8.18830 -6.30575 -1.10738 1.41889 1.43731 1.54444 1.58718 1.63133 2.07970 2.42393 2.56447 2.86513 3.02669 3.14791 3.22242 3.28264 3.63141 3.66022 3.85939 3.89889 3.99645 4.16151 4.17735 4.22796 4.27541 4.47127 4.53981 4.55761 4.69147 4.83098 4.90525 4.92257 4.95411 5.00067 5.01205 5.17097 5.36228 5.45317 5.53645 5.71163 5.80282 5.84594 5.96861 6.22784 6.31872 6.86699 7.07956 7.38948 7.53083 8.93328 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.001650 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.673534 B =16967.150623 C =17238.505919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.148 3.852 12 N -0.727 5.727 13 C 0.693 3.307 14 O -0.641 6.641 15 N -0.729 5.729 16 C 0.107 3.893 17 C -0.109 4.109 18 C -0.578 4.578 19 H 0.168 0.832 20 C 0.075 3.925 21 N -0.689 5.689 22 C 0.064 3.936 23 C -0.627 4.627 24 S 2.376 3.624 25 O -0.972 6.972 26 O -0.985 6.985 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.009 1.009 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.414 0.586 35 H 0.417 0.583 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.365 0.635 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.151 0.849 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.057 -36.923 -2.312 39.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.023 3.977 12 N -0.383 5.383 13 C 0.392 3.608 14 O -0.523 6.523 15 N -0.386 5.386 16 C -0.018 4.018 17 C -0.148 4.148 18 C -0.693 4.693 19 H 0.186 0.814 20 C -0.056 4.056 21 N -0.319 5.319 22 C -0.067 4.067 23 C -0.761 4.761 24 S 2.565 3.435 25 O -0.969 6.969 26 O -0.982 6.982 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.251 0.749 35 H 0.255 0.745 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.187 0.813 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.169 0.831 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 13.213 -36.700 -1.496 39.035 hybrid contribution -0.581 1.394 -0.226 1.527 sum 12.632 -35.305 -1.722 37.537 Atomic orbital electron populations 1.70127 1.07987 1.27772 1.51677 1.26057 0.95770 1.03657 0.94792 0.85380 0.78626 0.78138 0.78462 1.19739 1.21116 1.18407 1.21680 0.93795 0.91928 1.50458 0.91388 1.18958 0.94503 0.93038 0.95085 1.21583 0.98413 0.91450 1.02258 1.21102 0.91433 0.84742 1.00418 1.44989 1.10958 1.03318 1.79053 1.16245 0.85086 0.81619 0.77833 1.90914 1.16702 1.84854 1.59790 1.44754 1.09537 1.04266 1.80086 1.21651 0.97446 0.80219 1.02504 1.21579 0.97120 0.88253 1.07818 1.30708 1.13231 1.04548 1.20788 0.81414 1.22147 0.93010 0.83144 1.07326 1.60027 1.44238 1.20523 1.07082 1.22054 0.89787 1.02801 0.92072 1.30919 1.10105 1.20935 1.14156 1.09088 0.75365 0.80131 0.78926 1.93545 1.66289 1.85167 1.51945 1.93607 1.43577 1.73512 1.87504 0.92848 0.98884 0.99088 0.91333 0.91036 0.93399 0.93845 0.74911 0.74497 0.90986 0.93668 0.88788 0.84712 0.88713 0.85479 0.81325 0.85933 0.88966 0.83142 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 11 C 0.15 5.56 5.67 86.38 0.49 6.05 16 12 N -0.73 -21.43 5.56 -478.54 -2.66 -24.09 16 13 C 0.69 22.57 8.57 179.05 1.53 24.11 16 14 O -0.64 -28.10 16.34 -3.98 -0.06 -28.17 16 15 N -0.73 -15.73 5.56 -478.54 -2.66 -18.39 16 16 C 0.11 2.18 5.37 86.38 0.46 2.64 16 17 C -0.11 -0.97 4.79 30.59 0.15 -0.82 16 18 C -0.58 -3.46 2.57 30.65 0.08 -3.39 16 19 H 0.17 0.22 8.14 -2.39 -0.02 0.20 16 20 C 0.07 0.16 5.70 86.44 0.49 0.65 16 21 N -0.69 -1.02 6.71 -515.26 -3.46 -4.48 16 22 C 0.06 0.16 6.41 86.44 0.55 0.71 16 23 C -0.63 -2.85 6.49 72.04 0.47 -2.38 16 24 S 2.38 34.07 4.31 -56.49 -0.24 33.83 16 25 O -0.97 -20.76 17.93 -127.39 -2.28 -23.04 16 26 O -0.99 -25.00 16.12 -127.39 -2.05 -27.05 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 8.78 8.49 -92.71 -0.79 7.99 16 35 H 0.42 5.29 8.49 -92.70 -0.79 4.50 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.26 5.84 -2.39 -0.01 1.24 16 38 H 0.09 0.83 8.00 -2.39 -0.02 0.81 16 39 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.09 0.31 7.93 -2.39 -0.02 0.30 16 41 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.37 -0.82 8.67 -89.69 -0.78 -1.60 16 43 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.09 0.36 7.93 -2.38 -0.02 0.34 16 45 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.16 -0.02 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -92.86 384.30 -7.23 -100.09 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -1.35 Total: 7.72 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.23 Total: -4.99 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -8.50 Total: -104.61 kcal Atomic # 8 Polarization: -73.86 SS G_CDS: -4.40 Total: -78.27 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 34.07 SS G_CDS: -0.24 Total: 33.83 kcal Total: -92.86 -7.23 -100.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.595 kcal (2) G-P(sol) polarization free energy of solvation -92.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds