Wall clock time and date at job start Tue Mar 31 2020 17:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30838 * 125.90238 * 2 1 4 4 N 1.40088 * 108.20993 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.03762 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.91795 * 359.75767 * 4 3 2 7 7 C 1.50705 * 126.11956 * 180.23753 * 6 4 3 8 8 C 1.35309 * 107.75078 * 0.39037 * 6 4 3 9 9 C 1.50699 * 126.03956 * 179.87530 * 8 6 4 10 10 H 1.09000 * 109.47431 * 359.71687 * 9 8 6 11 11 C 1.53002 * 109.47162 * 119.71014 * 9 8 6 12 12 C 1.50693 * 109.47318 * 239.70990 * 9 8 6 13 13 O 1.21281 * 120.00095 * 0.02562 * 12 9 8 14 14 N 1.34780 * 120.00182 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 9 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.50699 * 109.46939 * 205.00060 * 15 14 12 18 18 H 1.08003 * 120.00271 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00384 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99644 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00636 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47208 * 89.99493 * 21 19 17 23 23 H 1.48492 * 109.47321 * 210.00422 * 21 19 17 24 24 H 1.48507 * 109.46867 * 329.99848 * 21 19 17 25 25 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 26 26 F 1.39905 * 109.47157 * 59.99740 * 25 15 14 27 27 F 1.39900 * 109.47010 * 300.00131 * 25 15 14 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 15 14 29 29 H 1.09007 * 109.46971 * 270.03136 * 1 2 3 30 30 H 1.09001 * 109.47304 * 30.02237 * 1 2 3 31 31 H 1.08995 * 109.47334 * 150.02659 * 1 2 3 32 32 H 1.09005 * 109.46861 * 90.02545 * 5 4 3 33 33 H 1.08998 * 109.46886 * 210.02536 * 5 4 3 34 34 H 1.09000 * 109.47357 * 330.02669 * 5 4 3 35 35 H 1.08992 * 109.47398 * 270.17461 * 7 6 4 36 36 H 1.08996 * 109.47529 * 30.18219 * 7 6 4 37 37 H 1.09003 * 109.46660 * 150.17515 * 7 6 4 38 38 H 1.08999 * 109.47583 * 179.97438 * 11 9 8 39 39 H 1.09004 * 109.47300 * 300.00143 * 11 9 8 40 40 H 1.09006 * 109.47080 * 60.00109 * 11 9 8 41 41 H 0.96994 * 120.00115 * 0.02562 * 14 12 9 42 42 H 0.97006 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0003 6 6 3.6141 -0.7154 0.0064 7 6 4.8350 -1.5989 0.0141 8 6 2.3271 -1.1330 0.0006 9 6 1.8599 -2.5657 0.0013 10 1 2.7242 -3.2298 0.0022 11 6 1.0155 -2.8262 1.2504 12 6 1.0292 -2.8238 -1.2293 13 8 0.8361 -1.9323 -2.0285 14 7 0.5018 -4.0457 -1.4423 15 6 -0.3052 -4.2968 -2.6389 16 1 -0.8783 -3.4028 -2.8847 17 6 -1.2489 -5.4422 -2.3771 18 1 -1.2473 -5.9343 -1.4157 19 6 -2.1143 -5.8621 -3.3649 20 7 -2.1166 -5.2626 -4.5355 21 14 -3.2845 -7.2814 -3.0403 22 1 -4.5603 -6.7555 -2.4915 23 1 -3.5519 -8.0029 -4.3103 24 1 -2.6715 -8.2142 -2.0607 25 6 0.6144 -4.6509 -3.8093 26 9 1.3500 -5.7983 -3.4937 27 9 1.4905 -3.5876 -4.0523 28 9 -0.1563 -4.8912 -4.9518 29 1 -0.3633 0.0006 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.0829 1.7160 1.0279 33 1 5.6093 0.9980 -0.5134 34 1 4.5564 2.4331 -0.5138 35 1 5.1345 -1.8138 -1.0116 36 1 5.6485 -1.0901 0.5312 37 1 4.6049 -2.5320 0.5285 38 1 0.6771 -3.8623 1.2507 39 1 1.6163 -2.6395 2.1405 40 1 0.1511 -2.1621 1.2496 41 1 0.6566 -4.7589 -0.8033 42 1 -2.7251 -5.5581 -5.2307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:13 Heat of formation + Delta-G solvation = -106.037839 kcal Electronic energy + Delta-G solvation = -30667.375246 eV Core-core repulsion = 26041.778105 eV Total energy + Delta-G solvation = -4625.597142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -48.31592 -45.97114 -45.58233 -41.33679 -38.92595 -34.83029 -34.27600 -33.53077 -32.48385 -30.99846 -29.27609 -28.19816 -26.69296 -25.51142 -24.56529 -23.69073 -21.51992 -20.05655 -19.37770 -19.08848 -17.44920 -16.83526 -16.62983 -16.46621 -15.90146 -15.77324 -15.50384 -14.94284 -14.60747 -14.43327 -13.69287 -13.50948 -13.40621 -13.19288 -13.11559 -12.88935 -12.79139 -12.68494 -12.51510 -12.37308 -12.29454 -12.23607 -12.05103 -11.96084 -11.87473 -11.76977 -11.69281 -11.43269 -11.17064 -11.13533 -10.83193 -10.69749 -10.38430 -10.13193 -9.63286 -9.03002 -8.82635 -8.69747 -8.18634 -8.05885 -6.21787 -4.45446 1.98884 2.61587 2.93445 3.19202 3.25813 3.28554 3.34579 3.97267 4.23697 4.51565 4.60834 4.66797 4.95320 4.97398 5.02967 5.08320 5.17333 5.24631 5.30327 5.37349 5.45936 5.59906 5.64392 5.74734 5.84221 5.89946 5.90790 5.93305 5.98385 6.18535 6.27191 6.32808 6.36945 6.40715 6.94053 6.99659 7.17004 7.25725 7.50836 7.65530 7.95665 8.41195 8.53132 9.00069 9.22846 10.69852 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.003727 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.549575 B = 7511.156536 C = 7919.910875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 N -0.307 5.307 4 N -0.381 5.381 5 C 0.106 3.894 6 C 0.084 3.916 7 C -0.092 4.092 8 C -0.206 4.206 9 C -0.031 4.031 10 H 0.095 0.905 11 C -0.141 4.141 12 C 0.509 3.491 13 O -0.524 6.524 14 N -0.713 5.713 15 C 0.246 3.754 16 H 0.084 0.916 17 C -0.551 4.551 18 H 0.077 0.923 19 C 0.065 3.935 20 N -0.840 5.840 21 Si 0.914 3.086 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.218 7.218 28 F -0.138 7.138 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 5.576 11.238 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 N -0.129 5.129 4 N -0.163 5.163 5 C -0.035 4.035 6 C -0.043 4.043 7 C -0.150 4.150 8 C -0.218 4.218 9 C -0.054 4.054 10 H 0.113 0.887 11 C -0.199 4.199 12 C 0.294 3.706 13 O -0.399 6.399 14 N -0.363 5.363 15 C 0.140 3.860 16 H 0.102 0.898 17 C -0.588 4.588 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.473 5.473 21 Si 0.740 3.260 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.195 1.195 25 C 0.360 3.640 26 F -0.192 7.192 27 F -0.200 7.200 28 F -0.119 7.119 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.995 7.617 10.404 16.946 hybrid contribution -0.130 -1.955 -0.023 1.959 sum 10.865 5.662 10.381 16.059 Atomic orbital electron populations 1.20333 0.86888 1.04485 1.01838 1.22011 0.96699 0.89774 0.96683 1.77281 0.85963 1.22558 1.27147 1.48139 1.05523 1.03853 1.58830 1.21717 0.84129 0.94962 1.02720 1.20702 0.96609 0.84687 1.02307 1.20454 0.92904 0.98262 1.03418 1.19070 0.91077 0.94718 1.16885 1.19540 0.98550 0.93023 0.94280 0.88737 1.21810 1.00026 1.02262 0.95775 1.20496 0.80147 0.82820 0.87185 1.90699 1.58983 1.43794 1.46443 1.46087 1.52878 1.11869 1.25482 1.19678 0.86826 1.00674 0.78826 0.89803 1.20880 1.19749 1.16982 1.01167 0.90477 1.25081 0.97296 0.97545 0.94472 1.70404 1.33824 1.39745 1.03327 0.86238 0.80548 0.81230 0.77969 1.20203 1.20872 1.19526 1.23177 0.79647 0.72894 0.88270 1.92983 1.79603 1.53271 1.93379 1.93072 1.72989 1.58318 1.95594 1.93400 1.72099 1.93826 1.52588 0.91261 0.91288 0.89186 0.91279 0.89907 0.89520 0.90163 0.91351 0.89621 0.91684 0.92014 0.91658 0.76930 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 8.57 36.00 0.31 -0.89 16 2 C 0.11 1.94 6.53 -82.41 -0.54 1.40 16 3 N -0.31 -5.24 12.58 33.67 0.42 -4.81 16 4 N -0.38 -5.38 4.01 -63.89 -0.26 -5.63 16 5 C 0.11 0.95 11.09 59.85 0.66 1.61 16 6 C 0.08 1.16 6.93 -82.26 -0.57 0.59 16 7 C -0.09 -0.87 9.53 36.01 0.34 -0.53 16 8 C -0.21 -3.25 4.36 -105.06 -0.46 -3.70 16 9 C -0.03 -0.46 2.88 -92.93 -0.27 -0.72 16 10 H 0.09 1.18 6.79 -51.93 -0.35 0.83 16 11 C -0.14 -1.69 8.95 37.16 0.33 -1.35 16 12 C 0.51 9.73 5.72 -10.99 -0.06 9.67 16 13 O -0.52 -12.07 12.44 5.56 0.07 -12.00 16 14 N -0.71 -14.07 4.88 -54.93 -0.27 -14.34 16 15 C 0.25 5.99 2.21 -69.08 -0.15 5.84 16 16 H 0.08 2.30 7.58 -51.93 -0.39 1.91 16 17 C -0.55 -13.77 8.46 -34.44 -0.29 -14.07 16 18 H 0.08 1.81 7.74 -52.48 -0.41 1.40 16 19 C 0.06 1.67 5.20 -17.82 -0.09 1.57 16 20 N -0.84 -22.93 9.51 55.43 0.53 -22.40 16 21 Si 0.91 19.88 29.54 -169.99 -5.02 14.86 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C 0.42 10.65 2.81 37.16 0.10 10.75 16 26 F -0.21 -5.15 16.94 2.25 0.04 -5.11 16 27 F -0.22 -5.58 15.68 2.25 0.04 -5.55 16 28 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 29 H 0.07 0.89 7.92 -51.92 -0.41 0.48 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.57 5.30 -51.93 -0.28 1.29 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.55 7.68 -51.93 -0.40 0.15 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.48 7.74 -51.93 -0.40 0.08 16 37 H 0.09 0.71 7.15 -51.93 -0.37 0.34 16 38 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.82 6.15 -51.93 -0.32 0.50 16 41 H 0.40 6.71 7.96 -40.82 -0.32 6.39 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -33.07 351.65 -5.10 -38.17 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.30 Total: 5.15 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.68 Total: 10.18 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.43 Total: -47.19 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 9 Polarization: -14.57 SS G_CDS: 0.10 Total: -14.47 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.07 -5.10 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.871 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds