Wall clock time and date at job start Tue Mar 31 2020 17:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30838 * 125.90238 * 2 1 4 4 N 1.40088 * 108.20993 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.03762 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.91795 * 359.75767 * 4 3 2 7 7 C 1.50705 * 126.11956 * 180.23753 * 6 4 3 8 8 C 1.35309 * 107.75078 * 0.39037 * 6 4 3 9 9 C 1.50699 * 126.03956 * 179.87530 * 8 6 4 10 10 H 1.09000 * 109.47431 * 359.71687 * 9 8 6 11 11 C 1.53002 * 109.47162 * 119.71014 * 9 8 6 12 12 C 1.50693 * 109.47318 * 239.70990 * 9 8 6 13 13 O 1.21281 * 120.00095 * 0.02562 * 12 9 8 14 14 N 1.34780 * 120.00182 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 9 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.50699 * 109.46939 * 205.00060 * 15 14 12 18 18 H 1.08003 * 120.00271 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00384 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99644 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00636 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47208 * 89.99493 * 21 19 17 23 23 H 1.48492 * 109.47321 * 210.00422 * 21 19 17 24 24 H 1.48507 * 109.46867 * 329.99848 * 21 19 17 25 25 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 26 26 F 1.39905 * 109.47157 * 59.99740 * 25 15 14 27 27 F 1.39900 * 109.47010 * 300.00131 * 25 15 14 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 15 14 29 29 H 1.09007 * 109.46971 * 270.03136 * 1 2 3 30 30 H 1.09001 * 109.47304 * 30.02237 * 1 2 3 31 31 H 1.08995 * 109.47334 * 150.02659 * 1 2 3 32 32 H 1.09005 * 109.46861 * 90.02545 * 5 4 3 33 33 H 1.08998 * 109.46886 * 210.02536 * 5 4 3 34 34 H 1.09000 * 109.47357 * 330.02669 * 5 4 3 35 35 H 1.08992 * 109.47398 * 270.17461 * 7 6 4 36 36 H 1.08996 * 109.47529 * 30.18219 * 7 6 4 37 37 H 1.09003 * 109.46660 * 150.17515 * 7 6 4 38 38 H 1.08999 * 109.47583 * 179.97438 * 11 9 8 39 39 H 1.09004 * 109.47300 * 300.00143 * 11 9 8 40 40 H 1.09006 * 109.47080 * 60.00109 * 11 9 8 41 41 H 0.96994 * 120.00115 * 0.02562 * 14 12 9 42 42 H 0.97006 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5007 0.0003 6 6 3.6141 -0.7154 0.0064 7 6 4.8350 -1.5989 0.0141 8 6 2.3271 -1.1330 0.0006 9 6 1.8599 -2.5657 0.0013 10 1 2.7242 -3.2298 0.0022 11 6 1.0155 -2.8262 1.2504 12 6 1.0292 -2.8238 -1.2293 13 8 0.8361 -1.9323 -2.0285 14 7 0.5018 -4.0457 -1.4423 15 6 -0.3052 -4.2968 -2.6389 16 1 -0.8783 -3.4028 -2.8847 17 6 -1.2489 -5.4422 -2.3771 18 1 -1.2473 -5.9343 -1.4157 19 6 -2.1143 -5.8621 -3.3649 20 7 -2.1166 -5.2626 -4.5355 21 14 -3.2845 -7.2814 -3.0403 22 1 -4.5603 -6.7555 -2.4915 23 1 -3.5519 -8.0029 -4.3103 24 1 -2.6715 -8.2142 -2.0607 25 6 0.6144 -4.6509 -3.8093 26 9 1.3500 -5.7983 -3.4937 27 9 1.4905 -3.5876 -4.0523 28 9 -0.1563 -4.8912 -4.9518 29 1 -0.3633 0.0006 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.0829 1.7160 1.0279 33 1 5.6093 0.9980 -0.5134 34 1 4.5564 2.4331 -0.5138 35 1 5.1345 -1.8138 -1.0116 36 1 5.6485 -1.0901 0.5312 37 1 4.6049 -2.5320 0.5285 38 1 0.6771 -3.8623 1.2507 39 1 1.6163 -2.6395 2.1405 40 1 0.1511 -2.1621 1.2496 41 1 0.6566 -4.7589 -0.8033 42 1 -2.7251 -5.5581 -5.2307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:10 Heat of formation + Delta-G solvation = -127.937613 kcal Electronic energy + Delta-G solvation = -30668.324892 eV Core-core repulsion = 26041.778105 eV Total energy + Delta-G solvation = -4626.546787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.38191 -48.01654 -47.69680 -42.43610 -40.44481 -36.48604 -35.55553 -34.70334 -34.21458 -31.98559 -30.41680 -29.90283 -27.64902 -26.56246 -26.46371 -24.98614 -23.24504 -21.57649 -20.48547 -20.36795 -19.17118 -18.82245 -18.62171 -18.17267 -17.40346 -17.08060 -16.74261 -16.54638 -16.07920 -15.73040 -14.99828 -14.94795 -14.83536 -14.67936 -14.48680 -14.42530 -14.27109 -14.20799 -14.00088 -13.93939 -13.85684 -13.71165 -13.53999 -13.35852 -13.11700 -13.01835 -12.89019 -12.78001 -12.64117 -12.59062 -12.32798 -12.17994 -12.15571 -11.53792 -11.27292 -10.64334 -10.56496 -9.93392 -9.90803 -9.16348 -8.17435 -6.47652 0.93221 1.48954 1.49861 1.61085 1.69392 1.73259 1.84252 2.33951 2.49148 2.63010 2.98460 3.56688 3.77033 3.78840 3.88020 3.93745 4.13634 4.19663 4.23182 4.36254 4.39796 4.42498 4.50043 4.57246 4.64159 4.74418 4.75033 4.88210 4.95374 5.00493 5.07186 5.12716 5.22761 5.30315 5.41339 5.51810 5.62287 5.70558 5.79388 6.23944 6.57895 6.82780 6.87638 7.22226 7.52428 8.75203 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.003727 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.549575 B = 7511.156536 C = 7919.910875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.092 3.908 3 N -0.345 5.345 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.089 3.911 7 C -0.092 4.092 8 C -0.238 4.238 9 C -0.018 4.018 10 H 0.122 0.878 11 C -0.137 4.137 12 C 0.506 3.494 13 O -0.567 6.567 14 N -0.706 5.706 15 C 0.253 3.747 16 H 0.044 0.956 17 C -0.557 4.557 18 H 0.094 0.906 19 C 0.014 3.986 20 N -0.877 5.877 21 Si 0.981 3.019 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.256 1.256 25 C 0.413 3.587 26 F -0.203 7.203 27 F -0.221 7.221 28 F -0.153 7.153 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.413 0.587 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.761 4.240 13.538 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 N -0.168 5.168 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.039 4.039 7 C -0.150 4.150 8 C -0.249 4.249 9 C -0.040 4.040 10 H 0.140 0.860 11 C -0.194 4.194 12 C 0.293 3.707 13 O -0.445 6.445 14 N -0.357 5.357 15 C 0.146 3.854 16 H 0.062 0.938 17 C -0.594 4.594 18 H 0.112 0.888 19 C -0.191 4.191 20 N -0.511 5.511 21 Si 0.804 3.196 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.180 1.180 25 C 0.357 3.643 26 F -0.184 7.184 27 F -0.203 7.203 28 F -0.135 7.135 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.249 0.751 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.743 6.284 12.751 19.091 hybrid contribution -0.560 -1.433 -0.762 1.717 sum 12.184 4.851 11.988 17.768 Atomic orbital electron populations 1.20246 0.87094 1.02824 1.02812 1.22212 0.97085 0.90636 0.97342 1.77178 0.87709 1.23312 1.28587 1.48570 1.05553 1.04771 1.57562 1.22129 0.83075 0.94665 1.04650 1.21375 0.97520 0.85022 0.99992 1.20639 0.91825 0.98388 1.04107 1.19308 0.91924 0.94812 1.18858 1.19535 0.98780 0.93229 0.92495 0.86015 1.21820 0.99583 1.02728 0.95300 1.21424 0.79545 0.81631 0.88077 1.90681 1.60465 1.45011 1.48393 1.45943 1.52436 1.12954 1.24373 1.19244 0.87029 0.98940 0.80187 0.93845 1.21247 1.19543 1.16832 1.01776 0.88759 1.25997 0.98883 1.00034 0.94182 1.70547 1.34843 1.41369 1.04352 0.85196 0.78454 0.78138 0.77774 1.19629 1.21345 1.17984 1.23376 0.79723 0.73023 0.88198 1.92982 1.79387 1.52813 1.93263 1.93060 1.73061 1.58522 1.95637 1.93369 1.72610 1.93947 1.53550 0.88950 0.92119 0.91489 0.88983 0.87190 0.89674 0.90085 0.88344 0.87999 0.90393 0.89601 0.92893 0.75067 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 8.57 71.23 0.61 -1.69 16 2 C 0.09 3.16 6.53 43.10 0.28 3.44 16 3 N -0.34 -11.77 12.58 -47.39 -0.60 -12.37 16 4 N -0.38 -10.20 4.01 -356.03 -1.43 -11.63 16 5 C 0.09 1.45 11.09 127.77 1.42 2.87 16 6 C 0.09 2.28 6.93 41.41 0.29 2.56 16 7 C -0.09 -1.39 9.53 71.24 0.68 -0.71 16 8 C -0.24 -7.23 4.36 -20.15 -0.09 -7.32 16 9 C -0.02 -0.50 2.88 -12.29 -0.04 -0.53 16 10 H 0.12 2.65 6.79 -2.39 -0.02 2.63 16 11 C -0.14 -2.96 8.95 71.98 0.64 -2.32 16 12 C 0.51 19.33 5.72 87.65 0.50 19.83 16 13 O -0.57 -27.04 12.44 -3.03 -0.04 -27.08 16 14 N -0.71 -27.56 4.88 -446.10 -2.18 -29.73 16 15 C 0.25 12.57 2.21 44.24 0.10 12.67 16 16 H 0.04 2.52 7.58 -2.39 -0.02 2.50 16 17 C -0.56 -27.66 8.46 25.60 0.22 -27.44 16 18 H 0.09 4.25 7.74 -2.91 -0.02 4.23 16 19 C 0.01 0.72 5.20 84.65 0.44 1.16 16 20 N -0.88 -48.84 9.51 21.45 0.20 -48.63 16 21 Si 0.98 40.20 29.54 68.60 2.03 42.23 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 25 C 0.41 21.42 2.81 71.98 0.20 21.62 16 26 F -0.20 -9.81 16.94 44.97 0.76 -9.05 16 27 F -0.22 -11.53 15.68 44.97 0.70 -10.83 16 28 F -0.15 -8.75 12.91 44.97 0.58 -8.17 16 29 H 0.09 2.42 7.92 -2.38 -0.02 2.40 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.46 5.30 -2.39 -0.01 2.45 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.11 1.08 7.68 -2.39 -0.02 1.06 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 0.91 7.74 -2.39 -0.02 0.89 16 37 H 0.10 1.23 7.15 -2.39 -0.02 1.22 16 38 H 0.08 1.47 7.56 -2.39 -0.02 1.45 16 39 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 1.28 6.15 -2.38 -0.01 1.26 16 41 H 0.41 13.24 7.96 -92.71 -0.74 12.51 16 42 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -74.25 351.65 5.63 -68.61 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.34 Total: 22.51 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 5.25 Total: 24.14 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -4.00 Total: -102.37 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.04 Total: -27.08 kcal Atomic # 9 Polarization: -30.10 SS G_CDS: 2.05 Total: -28.05 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -74.25 5.63 -68.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.323 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds