Wall clock time and date at job start Tue Mar 31 2020 17:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00216 * 2 1 4 4 C 1.50699 * 109.46902 * 275.69217 * 3 2 1 5 5 H 1.07997 * 120.00038 * 4.78499 * 4 3 2 6 6 C 1.37882 * 120.00302 * 184.77620 * 4 3 2 7 7 N 1.31514 * 119.99405 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00356 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47037 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46962 * 120.00326 * 8 6 4 11 11 H 1.48494 * 109.47269 * 240.00450 * 8 6 4 12 12 S 1.65599 * 119.99924 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40517 * 158.42839 * 12 2 1 14 14 O 1.42106 * 106.40141 * 25.51208 * 12 2 1 15 15 N 1.65600 * 107.22144 * 271.97011 * 12 2 1 16 16 C 1.46500 * 119.99707 * 62.58281 * 15 12 2 17 17 H 1.08995 * 110.89044 * 19.75962 * 16 15 12 18 18 C 1.54633 * 110.96962 * 255.95209 * 16 15 12 19 19 C 1.51276 * 104.19812 * 266.68460 * 18 16 15 20 20 O 1.21275 * 124.94709 * 163.77259 * 19 18 16 21 21 N 1.34428 * 110.11478 * 343.74015 * 19 18 16 22 22 C 1.46498 * 124.34844 * 179.86033 * 21 19 18 23 23 C 1.53001 * 109.46934 * 239.70382 * 22 21 19 24 24 C 1.52995 * 109.47187 * 359.70088 * 22 21 19 25 25 C 1.52995 * 109.47136 * 119.70874 * 22 21 19 26 26 C 1.46762 * 111.29600 * 359.60028 * 21 19 18 27 27 H 1.09002 * 109.47584 * 270.00637 * 1 2 3 28 28 H 1.08999 * 109.46856 * 30.00098 * 1 2 3 29 29 H 1.08998 * 109.47380 * 150.00004 * 1 2 3 30 30 H 1.08997 * 109.46876 * 35.69318 * 3 2 1 31 31 H 1.09004 * 109.47297 * 155.69480 * 3 2 1 32 32 H 0.96997 * 119.99991 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00226 * 242.58430 * 15 12 2 34 34 H 1.09010 * 110.48580 * 25.35835 * 18 16 15 35 35 H 1.08999 * 110.48703 * 147.99909 * 18 16 15 36 36 H 1.09002 * 109.47674 * 60.00052 * 23 22 21 37 37 H 1.09000 * 109.47096 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47509 * 300.00057 * 23 22 21 39 39 H 1.08997 * 109.47032 * 60.00739 * 24 22 21 40 40 H 1.09008 * 109.46665 * 179.97438 * 24 22 21 41 41 H 1.08994 * 109.47710 * 299.99837 * 24 22 21 42 42 H 1.08999 * 109.47562 * 59.99245 * 25 22 21 43 43 H 1.09000 * 109.47588 * 180.02562 * 25 22 21 44 44 H 1.09004 * 109.46751 * 299.99440 * 25 22 21 45 45 H 1.09001 * 110.24653 * 136.01529 * 26 21 19 46 46 H 1.09004 * 110.24579 * 258.01059 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3266 1.7741 -1.4138 5 1 1.8396 1.2485 -2.2218 6 6 3.0664 2.9078 -1.6759 7 7 3.6598 3.5477 -0.6920 8 14 3.2259 3.5347 -3.4282 9 1 2.4692 2.6433 -4.3437 10 1 2.6768 4.9118 -3.5131 11 1 4.6579 3.5477 -3.8209 12 16 2.2929 -1.4341 0.0006 13 8 3.5914 -1.1481 -0.5007 14 8 1.4281 -2.3970 -0.5861 15 7 2.4910 -1.8852 1.5817 16 6 1.3196 -2.1672 2.4151 17 1 0.4456 -2.3775 1.7988 18 6 1.0408 -1.0003 3.3907 19 6 1.7706 -1.3924 4.6564 20 8 2.0396 -0.6364 5.5658 21 7 2.0772 -2.7009 4.6268 22 6 2.7887 -3.4075 5.6948 23 6 4.0824 -4.0047 5.1374 24 6 3.1233 -2.4268 6.8204 25 6 1.9036 -4.5292 6.2419 26 6 1.6020 -3.3318 3.3898 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6564 2.0006 0.5996 31 1 3.1903 1.1151 0.4230 32 1 4.1805 4.3450 -0.8763 33 1 3.3825 -1.9628 1.9559 34 1 1.4404 -0.0671 2.9935 35 1 -0.0287 -0.9084 3.5798 36 1 4.7130 -3.2057 4.7475 37 1 4.6115 -4.5308 5.9319 38 1 3.8441 -4.7034 4.3354 39 1 2.2017 -2.0014 7.2176 40 1 3.6523 -2.9528 7.6152 41 1 3.7539 -1.6278 6.4307 42 1 1.6652 -5.2279 5.4399 43 1 2.4327 -5.0547 7.0368 44 1 0.9819 -4.1037 6.6390 45 1 2.3710 -3.9875 2.9813 46 1 0.6880 -3.8943 3.5803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080785993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:26 Heat of formation + Delta-G solvation = -104.325898 kcal Electronic energy + Delta-G solvation = -28659.568624 eV Core-core repulsion = 24711.346409 eV Total energy + Delta-G solvation = -3948.222215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.94843 -37.03036 -36.79289 -36.52299 -35.53127 -35.23691 -32.99443 -32.44689 -29.38879 -28.03576 -27.79303 -27.63201 -26.90814 -25.11022 -22.36499 -22.18325 -21.42173 -19.23319 -18.74474 -17.48524 -16.97343 -16.61874 -16.60190 -16.37273 -15.64451 -15.23482 -14.76767 -14.36784 -14.27702 -14.07096 -14.02627 -13.77828 -13.49447 -13.31576 -13.23758 -12.58956 -12.44461 -12.36059 -12.30534 -12.18777 -12.01157 -11.88144 -11.80173 -11.63967 -11.53326 -11.44323 -11.23917 -11.22166 -11.16995 -11.09897 -10.72505 -10.54705 -10.07717 -9.81791 -9.74531 -9.29903 -8.84365 -8.45587 -8.11029 -6.07037 -4.11489 1.12423 2.56355 2.76138 3.30552 3.35595 3.38555 3.43604 4.01766 4.17909 4.22095 4.44069 4.59394 4.61057 4.67419 4.77082 4.82361 5.02019 5.16178 5.22584 5.26213 5.28045 5.31969 5.38330 5.46538 5.49978 5.58269 5.59316 5.69656 5.77579 5.78962 5.92446 5.98714 6.03631 6.16777 6.25314 6.51075 6.52070 6.95715 7.02219 7.22473 7.37065 7.58329 7.90005 8.14449 8.18911 8.91264 9.54116 11.01544 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.003439 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.513136 B = 8140.922151 C = 8610.483571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.994 5.994 3 C 0.257 3.743 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.780 3.220 13 O -0.960 6.960 14 O -0.996 6.996 15 N -1.125 6.125 16 C 0.144 3.856 17 H 0.119 0.881 18 C -0.178 4.178 19 C 0.523 3.477 20 O -0.526 6.526 21 N -0.613 5.613 22 C 0.173 3.827 23 C -0.160 4.160 24 C -0.141 4.141 25 C -0.156 4.156 26 C 0.097 3.903 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -16.328 13.320 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.837 5.837 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.788 3.212 13 O -0.944 6.944 14 O -0.979 6.979 15 N -0.882 5.882 16 C 0.035 3.965 17 H 0.137 0.863 18 C -0.220 4.220 19 C 0.311 3.689 20 O -0.402 6.402 21 N -0.349 5.349 22 C 0.090 3.910 23 C -0.218 4.218 24 C -0.198 4.198 25 C -0.214 4.214 26 C -0.028 4.028 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.247 0.753 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.437 -16.271 13.053 21.556 hybrid contribution 0.423 0.605 -0.494 0.888 sum -5.014 -15.666 12.559 20.696 Atomic orbital electron populations 1.21406 0.80214 1.03681 1.00214 1.57589 1.14263 1.23260 1.88582 1.19084 0.91183 0.78553 0.97713 1.21516 1.31756 1.10357 0.93446 0.92082 1.24943 0.95029 0.96565 0.97474 1.69928 1.33013 1.18986 1.31279 0.86460 0.78046 0.78487 0.84556 1.19646 1.20963 1.20811 1.02055 0.73493 0.72986 0.72708 1.93657 1.39367 1.84580 1.76762 1.93533 1.68466 1.60821 1.75116 1.56428 1.13474 1.85680 1.32568 1.21533 0.89383 0.93431 0.92170 0.86309 1.23027 1.02864 1.01638 0.94508 1.20818 0.78400 0.81571 0.88097 1.90731 1.55120 1.55199 1.39128 1.48446 1.57382 1.09631 1.19435 1.20457 0.91269 0.92507 0.86813 1.22212 0.96680 1.01332 1.01587 1.22096 1.03084 0.98316 0.96310 1.22182 1.00086 0.97887 1.01265 1.22385 1.00833 0.95730 0.83838 0.94212 0.90254 0.91560 0.94875 0.94021 0.92699 0.75311 0.86496 0.86843 0.91855 0.91323 0.92134 0.91259 0.92581 0.91132 0.92199 0.91389 0.92161 0.89378 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.69 59.84 0.64 2.04 16 2 N -0.99 -19.10 3.23 -123.05 -0.40 -19.50 16 3 C 0.26 6.21 5.10 -5.19 -0.03 6.19 16 4 C -0.53 -14.66 9.38 -34.44 -0.32 -14.98 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 S 2.78 50.73 6.04 -107.50 -0.65 50.08 16 13 O -0.96 -22.07 17.03 -57.17 -0.97 -23.04 16 14 O -1.00 -18.82 16.29 -57.17 -0.93 -19.75 16 15 N -1.12 -14.73 5.58 -3.50 -0.02 -14.75 16 16 C 0.14 1.47 3.85 -66.30 -0.26 1.21 16 17 H 0.12 1.06 7.68 -51.93 -0.40 0.66 16 18 C -0.18 -1.95 6.58 -26.74 -0.18 -2.13 16 19 C 0.52 6.66 7.84 -10.86 -0.09 6.57 16 20 O -0.53 -8.51 13.99 5.56 0.08 -8.43 16 21 N -0.61 -6.11 2.76 -157.58 -0.43 -6.55 16 22 C 0.17 1.54 1.20 -131.82 -0.16 1.38 16 23 C -0.16 -1.26 8.49 37.16 0.32 -0.94 16 24 C -0.14 -1.47 7.00 37.16 0.26 -1.21 16 25 C -0.16 -1.07 8.54 37.15 0.32 -0.76 16 26 C 0.10 0.79 6.28 -3.13 -0.02 0.77 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 29 H 0.07 0.95 7.04 -51.93 -0.37 0.58 16 30 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.04 1.09 7.53 -51.93 -0.39 0.70 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.41 5.06 8.90 -34.47 -0.31 4.75 16 34 H 0.12 1.53 8.09 -51.92 -0.42 1.11 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.43 7.22 -51.93 -0.37 0.05 16 39 H 0.07 0.83 7.05 -51.93 -0.37 0.46 16 40 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 41 H 0.07 0.90 7.09 -51.93 -0.37 0.53 16 42 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.67 7.07 -51.93 -0.37 0.30 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -35.36 382.48 -8.99 -44.36 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.54 Total: 0.61 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 0.39 Total: -0.18 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.11 Total: -66.12 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.83 Total: -51.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 50.73 SS G_CDS: -0.65 Total: 50.08 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.36 -8.99 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080785993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.970 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds