Wall clock time and date at job start Tue Mar 31 2020 17:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00216 * 2 1 4 4 C 1.50699 * 109.46902 * 275.69217 * 3 2 1 5 5 H 1.07997 * 120.00038 * 4.78499 * 4 3 2 6 6 C 1.37882 * 120.00302 * 184.77620 * 4 3 2 7 7 N 1.31514 * 119.99405 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00356 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47037 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46962 * 120.00326 * 8 6 4 11 11 H 1.48494 * 109.47269 * 240.00450 * 8 6 4 12 12 S 1.65599 * 119.99924 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40517 * 158.42839 * 12 2 1 14 14 O 1.42106 * 106.40141 * 25.51208 * 12 2 1 15 15 N 1.65600 * 107.22144 * 271.97011 * 12 2 1 16 16 C 1.46500 * 119.99707 * 62.58281 * 15 12 2 17 17 H 1.08995 * 110.89044 * 19.75962 * 16 15 12 18 18 C 1.54633 * 110.96962 * 255.95209 * 16 15 12 19 19 C 1.51276 * 104.19812 * 266.68460 * 18 16 15 20 20 O 1.21275 * 124.94709 * 163.77259 * 19 18 16 21 21 N 1.34428 * 110.11478 * 343.74015 * 19 18 16 22 22 C 1.46498 * 124.34844 * 179.86033 * 21 19 18 23 23 C 1.53001 * 109.46934 * 239.70382 * 22 21 19 24 24 C 1.52995 * 109.47187 * 359.70088 * 22 21 19 25 25 C 1.52995 * 109.47136 * 119.70874 * 22 21 19 26 26 C 1.46762 * 111.29600 * 359.60028 * 21 19 18 27 27 H 1.09002 * 109.47584 * 270.00637 * 1 2 3 28 28 H 1.08999 * 109.46856 * 30.00098 * 1 2 3 29 29 H 1.08998 * 109.47380 * 150.00004 * 1 2 3 30 30 H 1.08997 * 109.46876 * 35.69318 * 3 2 1 31 31 H 1.09004 * 109.47297 * 155.69480 * 3 2 1 32 32 H 0.96997 * 119.99991 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00226 * 242.58430 * 15 12 2 34 34 H 1.09010 * 110.48580 * 25.35835 * 18 16 15 35 35 H 1.08999 * 110.48703 * 147.99909 * 18 16 15 36 36 H 1.09002 * 109.47674 * 60.00052 * 23 22 21 37 37 H 1.09000 * 109.47096 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47509 * 300.00057 * 23 22 21 39 39 H 1.08997 * 109.47032 * 60.00739 * 24 22 21 40 40 H 1.09008 * 109.46665 * 179.97438 * 24 22 21 41 41 H 1.08994 * 109.47710 * 299.99837 * 24 22 21 42 42 H 1.08999 * 109.47562 * 59.99245 * 25 22 21 43 43 H 1.09000 * 109.47588 * 180.02562 * 25 22 21 44 44 H 1.09004 * 109.46751 * 299.99440 * 25 22 21 45 45 H 1.09001 * 110.24653 * 136.01529 * 26 21 19 46 46 H 1.09004 * 110.24579 * 258.01059 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3266 1.7741 -1.4138 5 1 1.8396 1.2485 -2.2218 6 6 3.0664 2.9078 -1.6759 7 7 3.6598 3.5477 -0.6920 8 14 3.2259 3.5347 -3.4282 9 1 2.4692 2.6433 -4.3437 10 1 2.6768 4.9118 -3.5131 11 1 4.6579 3.5477 -3.8209 12 16 2.2929 -1.4341 0.0006 13 8 3.5914 -1.1481 -0.5007 14 8 1.4281 -2.3970 -0.5861 15 7 2.4910 -1.8852 1.5817 16 6 1.3196 -2.1672 2.4151 17 1 0.4456 -2.3775 1.7988 18 6 1.0408 -1.0003 3.3907 19 6 1.7706 -1.3924 4.6564 20 8 2.0396 -0.6364 5.5658 21 7 2.0772 -2.7009 4.6268 22 6 2.7887 -3.4075 5.6948 23 6 4.0824 -4.0047 5.1374 24 6 3.1233 -2.4268 6.8204 25 6 1.9036 -4.5292 6.2419 26 6 1.6020 -3.3318 3.3898 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6564 2.0006 0.5996 31 1 3.1903 1.1151 0.4230 32 1 4.1805 4.3450 -0.8763 33 1 3.3825 -1.9628 1.9559 34 1 1.4404 -0.0671 2.9935 35 1 -0.0287 -0.9084 3.5798 36 1 4.7130 -3.2057 4.7475 37 1 4.6115 -4.5308 5.9319 38 1 3.8441 -4.7034 4.3354 39 1 2.2017 -2.0014 7.2176 40 1 3.6523 -2.9528 7.6152 41 1 3.7539 -1.6278 6.4307 42 1 1.6652 -5.2279 5.4399 43 1 2.4327 -5.0547 7.0368 44 1 0.9819 -4.1037 6.6390 45 1 2.3710 -3.9875 2.9813 46 1 0.6880 -3.8943 3.5803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080785993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:26 Heat of formation + Delta-G solvation = -131.471146 kcal Electronic energy + Delta-G solvation = -28660.745730 eV Core-core repulsion = 24711.346409 eV Total energy + Delta-G solvation = -3949.399321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81079 -38.32992 -37.90856 -37.50854 -37.14804 -36.82859 -34.49362 -33.97257 -30.28486 -29.62287 -28.81423 -28.19827 -27.71521 -26.73839 -24.19522 -23.06044 -22.26250 -20.54044 -19.61030 -19.01692 -18.42942 -18.24984 -17.78923 -17.40556 -16.94144 -16.57736 -16.18184 -15.60436 -15.23216 -15.07764 -14.91951 -14.80476 -14.75333 -14.47509 -14.20713 -14.03639 -13.87723 -13.43632 -13.32744 -13.25734 -13.12798 -13.00241 -12.96703 -12.92118 -12.84381 -12.62524 -12.55639 -12.44596 -12.43541 -12.35041 -12.09522 -11.96030 -11.92036 -11.70328 -10.87253 -10.59470 -10.29896 -9.76422 -9.62975 -8.19845 -6.31923 -0.32084 1.38641 1.41144 1.52507 1.61142 1.99467 2.01853 2.40459 2.65358 3.11634 3.33781 3.35546 3.54501 3.79769 3.90705 3.95865 4.05700 4.10961 4.20207 4.27776 4.58470 4.62355 4.69571 4.72392 4.77926 4.80462 4.85103 4.86618 4.91635 4.96886 4.97486 5.09936 5.16288 5.20745 5.23700 5.31766 5.39920 5.46546 5.72219 5.73650 5.85362 6.05942 6.12478 6.17658 6.78005 7.22424 7.37477 8.87766 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.003439 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.513136 B = 8140.922151 C = 8610.483571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.001 6.001 3 C 0.273 3.727 4 C -0.548 4.548 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.957 3.043 9 H -0.266 1.266 10 H -0.271 1.271 11 H -0.282 1.282 12 S 2.800 3.200 13 O -1.014 7.014 14 O -0.999 6.999 15 N -1.112 6.112 16 C 0.137 3.863 17 H 0.143 0.857 18 C -0.176 4.176 19 C 0.512 3.488 20 O -0.572 6.572 21 N -0.607 5.607 22 C 0.165 3.835 23 C -0.157 4.157 24 C -0.135 4.135 25 C -0.149 4.149 26 C 0.098 3.902 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.014 0.986 32 H 0.266 0.734 33 H 0.419 0.581 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -18.741 13.259 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.843 5.843 3 C 0.150 3.850 4 C -0.587 4.587 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.196 1.196 11 H -0.208 1.208 12 S 2.808 3.192 13 O -0.998 6.998 14 O -0.982 6.982 15 N -0.872 5.872 16 C 0.030 3.970 17 H 0.161 0.839 18 C -0.218 4.218 19 C 0.300 3.700 20 O -0.452 6.452 21 N -0.341 5.341 22 C 0.083 3.917 23 C -0.215 4.215 24 C -0.192 4.192 25 C -0.207 4.207 26 C -0.026 4.026 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.119 0.881 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.002 -18.730 12.972 23.835 hybrid contribution 0.871 1.272 -0.380 1.588 sum -6.130 -17.458 12.593 22.382 Atomic orbital electron populations 1.21682 0.77817 1.03863 1.02876 1.57436 1.15878 1.21689 1.89271 1.18561 0.90356 0.80392 0.95737 1.21905 1.31491 1.10465 0.94857 0.92577 1.25782 0.94870 0.96970 1.01391 1.70030 1.33810 1.19526 1.33207 0.85528 0.77929 0.78445 0.79940 1.19028 1.19646 1.20791 1.01214 0.72056 0.72499 0.73426 1.93583 1.42119 1.85269 1.78808 1.93522 1.68269 1.60460 1.75988 1.55986 1.14961 1.84979 1.31283 1.21920 0.88770 0.94016 0.92339 0.83939 1.23034 1.04283 1.00750 0.93698 1.21168 0.78396 0.82271 0.88118 1.90711 1.57125 1.56561 1.40845 1.48559 1.56446 1.08943 1.20177 1.20651 0.92359 0.92605 0.86123 1.22196 0.95819 1.00950 1.02536 1.21997 1.01675 0.98031 0.97523 1.22123 0.99315 0.97079 1.02140 1.22604 1.02931 0.94873 0.82171 0.90309 0.91400 0.90060 0.95572 0.96783 0.92510 0.74671 0.88926 0.83938 0.93889 0.89716 0.90663 0.93205 0.90555 0.94303 0.90523 0.89997 0.92821 0.88069 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 10.69 127.77 1.37 3.76 16 2 N -1.00 -38.17 3.23 -543.23 -1.75 -39.92 16 3 C 0.27 13.59 5.10 85.63 0.44 14.02 16 4 C -0.55 -30.72 9.38 25.60 0.24 -30.48 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.52 5.46 84.66 0.46 0.98 16 7 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 S 2.80 100.49 6.04 -56.49 -0.34 100.15 16 13 O -1.01 -47.58 17.03 -128.00 -2.18 -49.76 16 14 O -1.00 -35.77 16.29 -128.00 -2.09 -37.85 16 15 N -1.11 -27.73 5.58 -165.00 -0.92 -28.65 16 16 C 0.14 2.41 3.85 46.05 0.18 2.59 16 17 H 0.14 1.91 7.68 -2.39 -0.02 1.90 16 18 C -0.18 -3.59 6.58 30.59 0.20 -3.39 16 19 C 0.51 12.83 7.84 87.89 0.69 13.52 16 20 O -0.57 -19.31 13.99 -3.01 -0.04 -19.35 16 21 N -0.61 -10.99 2.76 -771.07 -2.13 -13.12 16 22 C 0.17 2.66 1.20 3.60 0.00 2.66 16 23 C -0.16 -2.15 8.49 71.98 0.61 -1.54 16 24 C -0.13 -2.82 7.00 71.98 0.50 -2.32 16 25 C -0.15 -1.57 8.54 71.98 0.61 -0.95 16 26 C 0.10 1.24 6.28 86.83 0.55 1.79 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.08 2.11 7.04 -2.39 -0.02 2.09 16 30 H 0.03 1.32 8.11 -2.39 -0.02 1.30 16 31 H 0.01 0.78 7.53 -2.38 -0.02 0.76 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.42 10.00 8.90 -96.74 -0.86 9.14 16 34 H 0.09 2.41 8.09 -2.38 -0.02 2.39 16 35 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.81 7.22 -2.39 -0.02 0.80 16 39 H 0.05 1.22 7.05 -2.39 -0.02 1.21 16 40 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.04 1.04 7.09 -2.39 -0.02 1.03 16 42 H 0.08 0.58 7.90 -2.39 -0.02 0.56 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 1.11 7.07 -2.39 -0.02 1.09 16 46 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -79.74 382.48 -1.17 -80.92 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.11 Total: 14.96 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.85 Total: 0.65 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -4.52 Total: -136.54 kcal Atomic # 8 Polarization: -102.65 SS G_CDS: -4.31 Total: -106.96 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 100.49 SS G_CDS: -0.34 Total: 100.15 kcal Total: -79.74 -1.17 -80.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080785993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.553 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds