Wall clock time and date at job start Tue Mar 31 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47412 * 2 1 4 4 N 1.46501 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.36944 * 119.99883 * 274.36006 * 4 3 2 6 6 H 1.07994 * 119.99624 * 337.77704 * 5 4 3 7 7 C 1.38808 * 119.99680 * 157.78580 * 5 4 3 8 8 N 1.31624 * 120.00203 * 7.74743 * 7 5 4 9 9 Si 1.86796 * 119.99939 * 187.74361 * 7 5 4 10 10 H 1.48501 * 109.47064 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47311 * 119.99993 * 9 7 5 12 12 H 1.48501 * 109.47452 * 240.00413 * 9 7 5 13 13 C 1.46499 * 119.99772 * 94.35767 * 4 3 2 14 14 C 1.50701 * 109.46926 * 269.99787 * 13 4 3 15 15 O 1.21284 * 120.00124 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99465 * 180.02562 * 14 13 4 17 17 C 1.46545 * 124.97650 * 179.97438 * 16 14 13 18 18 C 1.53741 * 105.19646 * 180.02562 * 17 16 14 19 19 C 1.51219 * 104.58152 * 359.77462 * 18 17 16 20 20 C 1.38191 * 130.96428 * 179.53663 * 19 18 17 21 21 C 1.38233 * 120.14406 * 180.39977 * 20 19 18 22 22 N 1.48017 * 120.08141 * 180.25533 * 21 20 19 23 23 O 1.21803 * 120.00050 * 359.97438 * 22 21 20 24 24 O 1.21796 * 120.00066 * 180.02562 * 22 21 20 25 25 C 1.38295 * 119.83036 * 0.27449 * 21 20 19 26 26 C 1.37838 * 120.22259 * 359.97438 * 25 21 20 27 27 C 1.38558 * 108.55885 * 0.38160 * 19 18 17 28 28 H 1.08999 * 109.46783 * 59.99547 * 1 2 3 29 29 H 1.08992 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46919 * 299.99750 * 1 2 3 31 31 H 1.09001 * 109.47405 * 240.00073 * 2 1 3 32 32 H 1.09007 * 109.47088 * 120.00297 * 2 1 3 33 33 H 1.09003 * 109.46874 * 60.00222 * 3 2 1 34 34 H 1.08990 * 109.47121 * 300.00445 * 3 2 1 35 35 H 0.97003 * 119.99695 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46632 * 150.00165 * 13 4 3 37 37 H 1.08999 * 109.47082 * 30.00011 * 13 4 3 38 38 H 1.08998 * 110.29731 * 298.95215 * 17 16 14 39 39 H 1.09003 * 110.29291 * 61.09209 * 17 16 14 40 40 H 1.08997 * 110.41677 * 118.77789 * 18 17 16 41 41 H 1.09000 * 110.41155 * 241.10757 * 18 17 16 42 42 H 1.07996 * 119.92792 * 0.67379 * 20 19 18 43 43 H 1.07990 * 119.88756 * 180.02562 * 25 21 20 44 44 H 1.07994 * 119.85998 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.3525 1.1835 6 1 3.7090 1.6369 2.1080 7 6 5.5001 0.8958 1.1940 8 7 6.1360 0.6946 0.0593 9 14 6.3616 0.5670 2.8185 10 1 5.4358 0.8688 3.9397 11 1 6.7681 -0.8597 2.8833 12 1 7.5654 1.4301 2.9240 13 6 4.2381 1.5387 -1.2642 14 6 4.4894 0.1549 -1.8055 15 8 4.0947 -0.8160 -1.1952 16 7 5.1529 -0.0036 -2.9679 17 6 5.4569 -1.2940 -3.5925 18 6 6.2171 -0.9479 -4.8832 19 6 6.2822 0.5629 -4.8932 20 6 6.8500 1.4392 -5.7983 21 6 6.7842 2.8025 -5.5794 22 7 7.3879 3.7402 -6.5527 23 8 7.9439 3.3108 -7.5478 24 8 7.3295 4.9411 -6.3582 25 6 6.1533 3.2881 -4.4486 26 6 5.5901 2.4174 -3.5405 27 6 5.6525 1.0390 -3.7545 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 7.0519 0.3752 0.0667 36 1 5.1904 2.0411 -1.0948 37 1 3.6493 2.1086 -1.9829 38 1 6.0843 -1.8944 -2.9337 39 1 4.5354 -1.8267 -3.8275 40 1 7.2196 -1.3749 -4.8602 41 1 5.6708 -1.3090 -5.7546 42 1 7.3423 1.0584 -6.6809 43 1 6.1010 4.3530 -4.2769 44 1 5.0985 2.8030 -2.6596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123005939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:29 Heat of formation + Delta-G solvation = 27.396744 kcal Electronic energy + Delta-G solvation = -29553.593732 eV Core-core repulsion = 25475.639488 eV Total energy + Delta-G solvation = -4077.954244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.97962 -40.92807 -38.33416 -36.57290 -36.34248 -35.40533 -33.23504 -32.74388 -30.78300 -30.53319 -29.43569 -27.45671 -26.10335 -25.70643 -23.41579 -23.15180 -22.02879 -21.36751 -20.23202 -19.64822 -18.76065 -18.44516 -17.32027 -17.27118 -16.65494 -16.15061 -16.01857 -15.31641 -14.49675 -14.44687 -14.18895 -14.02602 -13.82704 -13.42923 -13.38583 -12.99532 -12.92082 -12.89634 -12.33672 -12.11956 -11.89108 -11.65988 -11.39968 -11.34491 -11.24437 -11.13037 -10.99684 -10.97319 -10.87417 -10.76109 -10.54535 -10.38206 -10.21438 -10.05712 -9.77605 -9.21120 -9.17084 -8.69711 -7.79507 -7.11993 -6.08787 -3.47191 0.08451 1.05896 1.55661 1.65003 3.09385 3.24063 3.27958 3.33671 3.34615 3.86556 4.18660 4.31359 4.45487 4.63476 4.84493 4.90297 5.05818 5.11285 5.12517 5.24690 5.48937 5.53274 5.65010 5.66250 5.71741 5.76898 5.85892 5.89378 5.92891 6.00220 6.08442 6.09295 6.16334 6.31273 6.41677 6.44389 6.55750 6.63841 6.75619 6.92072 6.94191 7.22104 7.52877 7.84568 7.86953 8.10368 8.87621 9.06158 9.53697 9.98154 10.99460 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.003813 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.944940 B = 7342.192033 C = 7820.112023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.147 3.853 4 N -0.577 5.577 5 C -0.236 4.236 6 H 0.080 0.920 7 C 0.004 3.996 8 N -0.918 5.918 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.290 1.290 13 C 0.161 3.839 14 C 0.533 3.467 15 O -0.495 6.495 16 N -0.549 5.549 17 C 0.100 3.900 18 C -0.079 4.079 19 C -0.164 4.164 20 C -0.004 4.004 21 C -0.099 4.099 22 N 0.046 4.954 23 O -0.185 6.185 24 O -0.178 6.178 25 C -0.014 4.014 26 C -0.167 4.167 27 C 0.248 3.752 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.257 0.743 36 H 0.132 0.868 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -0.125 -9.740 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.021 3.979 4 N -0.295 5.295 5 C -0.365 4.365 6 H 0.098 0.902 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.746 3.254 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.217 1.217 13 C 0.031 3.969 14 C 0.324 3.676 15 O -0.365 6.365 16 N -0.269 5.269 17 C -0.022 4.022 18 C -0.116 4.116 19 C -0.168 4.168 20 C -0.024 4.024 21 C -0.185 4.185 22 N 0.559 4.441 23 O -0.396 6.396 24 O -0.391 6.391 25 C -0.034 4.034 26 C -0.189 4.189 27 C 0.143 3.857 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.165 0.835 43 H 0.171 0.829 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.953 -1.263 -8.628 9.206 hybrid contribution 0.958 -0.419 0.587 1.199 sum -1.995 -1.682 -8.041 8.454 Atomic orbital electron populations 1.21776 0.97840 1.00409 1.00622 1.22137 0.92826 1.00150 1.02948 1.21013 0.83843 0.94243 0.98825 1.43955 1.00022 1.83419 1.02138 1.19399 0.95238 1.35650 0.86191 0.90213 1.24919 0.97834 0.98980 0.97437 1.69555 1.11790 1.51050 1.24184 0.85991 0.79019 0.77809 0.82567 1.20267 1.21607 1.21683 1.21248 0.99254 0.90077 0.86348 1.22907 0.73834 0.95495 0.75356 1.90552 1.49361 1.42352 1.54264 1.47138 1.53087 1.04682 1.22008 1.22017 1.00232 0.86813 0.93161 1.21092 1.02028 0.90294 0.98175 1.19848 1.04849 0.96182 0.95957 1.19942 0.94650 0.89311 0.98506 1.20608 1.13079 0.89355 0.95490 1.43483 0.98205 1.01594 1.00806 1.94492 1.44115 1.82324 1.18651 1.94508 1.64244 0.98349 1.81957 1.20679 0.91388 1.01711 0.89593 1.21173 1.05601 0.89888 1.02223 1.18782 0.88150 0.89927 0.88819 0.93699 0.93835 0.93424 0.91997 0.92106 0.93408 0.94331 0.93258 0.85052 0.94621 0.89955 0.90266 0.89004 0.89086 0.83457 0.82868 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.14 -2.67 5.67 -26.73 -0.15 -2.82 16 3 C 0.15 2.82 5.72 -4.04 -0.02 2.80 16 4 N -0.58 -13.02 2.07 -174.61 -0.36 -13.38 16 5 C -0.24 -5.91 9.70 -15.06 -0.15 -6.05 16 6 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 7 C 0.00 0.10 5.41 -17.43 -0.09 0.01 16 8 N -0.92 -23.43 8.21 55.49 0.46 -22.98 16 9 Si 0.92 20.96 29.56 -169.99 -5.02 15.93 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.16 3.34 3.29 -5.19 -0.02 3.32 16 14 C 0.53 11.31 5.76 -10.98 -0.06 11.24 16 15 O -0.50 -12.20 14.17 5.55 0.08 -12.12 16 16 N -0.55 -9.57 3.13 -112.89 -0.35 -9.92 16 17 C 0.10 1.42 7.06 -3.63 -0.03 1.40 16 18 C -0.08 -0.84 6.94 -27.24 -0.19 -1.03 16 19 C -0.16 -2.11 6.23 -104.27 -0.65 -2.76 16 20 C 0.00 -0.05 9.55 -39.60 -0.38 -0.43 16 21 C -0.10 -1.37 6.86 -79.93 -0.55 -1.92 16 22 N 0.05 0.70 4.45 33.97 0.15 0.85 16 23 O -0.18 -2.88 18.46 -29.46 -0.54 -3.42 16 24 O -0.18 -2.82 18.46 -29.46 -0.54 -3.36 16 25 C -0.01 -0.18 9.53 -39.71 -0.38 -0.56 16 26 C -0.17 -2.41 8.88 -39.21 -0.35 -2.75 16 27 C 0.25 3.80 6.59 -83.57 -0.55 3.24 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.29 6.38 -51.93 -0.33 0.96 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.13 2.92 5.01 -51.93 -0.26 2.66 16 37 H 0.04 0.64 6.63 -51.93 -0.34 0.30 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.15 1.55 7.61 -52.49 -0.40 1.15 16 43 H 0.15 1.76 7.61 -52.49 -0.40 1.36 16 44 H 0.16 2.40 4.21 -52.49 -0.22 2.18 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -29.22 361.59 -9.60 -38.81 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.71 Total: 2.29 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.19 Total: 1.85 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.11 Total: -45.44 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -1.01 Total: -18.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.22 -9.60 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123005939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.212 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds