Wall clock time and date at job start Tue Mar 31 2020 17:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47412 * 2 1 4 4 N 1.46501 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.36944 * 119.99883 * 274.36006 * 4 3 2 6 6 H 1.07994 * 119.99624 * 337.77704 * 5 4 3 7 7 C 1.38808 * 119.99680 * 157.78580 * 5 4 3 8 8 N 1.31624 * 120.00203 * 7.74743 * 7 5 4 9 9 Si 1.86796 * 119.99939 * 187.74361 * 7 5 4 10 10 H 1.48501 * 109.47064 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47311 * 119.99993 * 9 7 5 12 12 H 1.48501 * 109.47452 * 240.00413 * 9 7 5 13 13 C 1.46499 * 119.99772 * 94.35767 * 4 3 2 14 14 C 1.50701 * 109.46926 * 269.99787 * 13 4 3 15 15 O 1.21284 * 120.00124 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99465 * 180.02562 * 14 13 4 17 17 C 1.46545 * 124.97650 * 179.97438 * 16 14 13 18 18 C 1.53741 * 105.19646 * 180.02562 * 17 16 14 19 19 C 1.51219 * 104.58152 * 359.77462 * 18 17 16 20 20 C 1.38191 * 130.96428 * 179.53663 * 19 18 17 21 21 C 1.38233 * 120.14406 * 180.39977 * 20 19 18 22 22 N 1.48017 * 120.08141 * 180.25533 * 21 20 19 23 23 O 1.21803 * 120.00050 * 359.97438 * 22 21 20 24 24 O 1.21796 * 120.00066 * 180.02562 * 22 21 20 25 25 C 1.38295 * 119.83036 * 0.27449 * 21 20 19 26 26 C 1.37838 * 120.22259 * 359.97438 * 25 21 20 27 27 C 1.38558 * 108.55885 * 0.38160 * 19 18 17 28 28 H 1.08999 * 109.46783 * 59.99547 * 1 2 3 29 29 H 1.08992 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46919 * 299.99750 * 1 2 3 31 31 H 1.09001 * 109.47405 * 240.00073 * 2 1 3 32 32 H 1.09007 * 109.47088 * 120.00297 * 2 1 3 33 33 H 1.09003 * 109.46874 * 60.00222 * 3 2 1 34 34 H 1.08990 * 109.47121 * 300.00445 * 3 2 1 35 35 H 0.97003 * 119.99695 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46632 * 150.00165 * 13 4 3 37 37 H 1.08999 * 109.47082 * 30.00011 * 13 4 3 38 38 H 1.08998 * 110.29731 * 298.95215 * 17 16 14 39 39 H 1.09003 * 110.29291 * 61.09209 * 17 16 14 40 40 H 1.08997 * 110.41677 * 118.77789 * 18 17 16 41 41 H 1.09000 * 110.41155 * 241.10757 * 18 17 16 42 42 H 1.07996 * 119.92792 * 0.67379 * 20 19 18 43 43 H 1.07990 * 119.88756 * 180.02562 * 25 21 20 44 44 H 1.07994 * 119.85998 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.3525 1.1835 6 1 3.7090 1.6369 2.1080 7 6 5.5001 0.8958 1.1940 8 7 6.1360 0.6946 0.0593 9 14 6.3616 0.5670 2.8185 10 1 5.4358 0.8688 3.9397 11 1 6.7681 -0.8597 2.8833 12 1 7.5654 1.4301 2.9240 13 6 4.2381 1.5387 -1.2642 14 6 4.4894 0.1549 -1.8055 15 8 4.0947 -0.8160 -1.1952 16 7 5.1529 -0.0036 -2.9679 17 6 5.4569 -1.2940 -3.5925 18 6 6.2171 -0.9479 -4.8832 19 6 6.2822 0.5629 -4.8932 20 6 6.8500 1.4392 -5.7983 21 6 6.7842 2.8025 -5.5794 22 7 7.3879 3.7402 -6.5527 23 8 7.9439 3.3108 -7.5478 24 8 7.3295 4.9411 -6.3582 25 6 6.1533 3.2881 -4.4486 26 6 5.5901 2.4174 -3.5405 27 6 5.6525 1.0390 -3.7545 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 7.0519 0.3752 0.0667 36 1 5.1904 2.0411 -1.0948 37 1 3.6493 2.1086 -1.9829 38 1 6.0843 -1.8944 -2.9337 39 1 4.5354 -1.8267 -3.8275 40 1 7.2196 -1.3749 -4.8602 41 1 5.6708 -1.3090 -5.7546 42 1 7.3423 1.0584 -6.6809 43 1 6.1010 4.3530 -4.2769 44 1 5.0985 2.8030 -2.6596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123005939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:28 Heat of formation + Delta-G solvation = 13.766515 kcal Electronic energy + Delta-G solvation = -29554.184783 eV Core-core repulsion = 25475.639488 eV Total energy + Delta-G solvation = -4078.545295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.15906 -42.15090 -39.80883 -37.95374 -37.55255 -36.90862 -34.76884 -34.03419 -32.45606 -31.74630 -30.56586 -28.96870 -27.34113 -27.29183 -24.76150 -24.33397 -23.42394 -22.53470 -21.75915 -21.00746 -19.91923 -19.63482 -19.01064 -18.49644 -18.07545 -17.47612 -17.25717 -16.88356 -16.03920 -15.77389 -15.65753 -15.44438 -15.23820 -14.84365 -14.57754 -14.36711 -14.12638 -14.03032 -13.70461 -13.37232 -13.14869 -13.00544 -12.97940 -12.81826 -12.62116 -12.55929 -12.35785 -12.28384 -12.21566 -12.19535 -12.01164 -11.95402 -11.80261 -11.61358 -11.31173 -10.93930 -10.50415 -10.20878 -9.04903 -8.88633 -7.98371 -5.36336 -1.09958 0.01063 0.36539 0.49173 1.39493 1.44681 1.50889 1.81025 1.99950 2.41326 2.54683 3.13588 3.24927 3.38181 3.55449 3.62245 3.73115 3.82680 4.05975 4.10017 4.24226 4.28175 4.39106 4.49639 4.57309 4.60943 4.64187 4.76130 4.76380 4.79683 4.87933 4.92132 4.92991 5.01711 5.13070 5.17578 5.22102 5.26942 5.37729 5.42491 5.55106 5.58745 5.70526 6.24064 6.45729 6.64248 7.05256 7.44939 7.76430 8.15115 9.05869 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.003813 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.944940 B = 7342.192033 C = 7820.112023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.594 5.594 5 C -0.243 4.243 6 H 0.076 0.924 7 C -0.039 4.039 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.306 1.306 12 H -0.289 1.289 13 C 0.163 3.837 14 C 0.537 3.463 15 O -0.541 6.541 16 N -0.559 5.559 17 C 0.094 3.906 18 C -0.066 4.066 19 C -0.149 4.149 20 C 0.004 3.996 21 C -0.101 4.101 22 N 0.045 4.955 23 O -0.181 6.181 24 O -0.196 6.196 25 C -0.009 4.009 26 C -0.170 4.170 27 C 0.221 3.779 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.245 0.755 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 0.052 -11.689 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.313 5.313 5 C -0.373 4.373 6 H 0.094 0.906 7 C -0.233 4.233 8 N -0.574 5.574 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.234 1.234 12 H -0.216 1.216 13 C 0.033 3.967 14 C 0.328 3.672 15 O -0.415 6.415 16 N -0.280 5.280 17 C -0.028 4.028 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.015 4.015 21 C -0.187 4.187 22 N 0.557 4.443 23 O -0.395 6.395 24 O -0.405 6.405 25 C -0.029 4.029 26 C -0.192 4.192 27 C 0.118 3.882 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.192 0.808 43 H 0.186 0.814 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.235 -1.019 -10.620 11.149 hybrid contribution 1.058 -0.436 1.065 1.563 sum -2.177 -1.455 -9.556 9.908 Atomic orbital electron populations 1.21684 0.94333 1.01462 1.02163 1.21961 0.95781 0.99241 1.00028 1.21165 0.82216 0.94584 1.00176 1.44148 1.01386 1.83769 1.02043 1.19548 0.95417 1.35144 0.87168 0.90622 1.25459 0.98688 0.99787 0.99392 1.69728 1.11109 1.51751 1.24767 0.85254 0.78300 0.76387 0.80767 1.19479 1.23372 1.21583 1.21215 0.98777 0.90350 0.86366 1.22696 0.73588 0.94936 0.75964 1.90524 1.51471 1.43424 1.56093 1.46822 1.53017 1.06577 1.21539 1.22207 1.00834 0.85417 0.94323 1.21164 1.03178 0.88629 0.97260 1.20044 1.03258 0.97439 0.94609 1.20165 0.93902 0.88467 0.99011 1.20786 1.12874 0.89795 0.95218 1.43647 0.98090 1.01669 1.00906 1.94481 1.43909 1.82244 1.18831 1.94515 1.64939 0.98802 1.82234 1.20779 0.90718 1.02340 0.89097 1.21139 1.05873 0.89947 1.02252 1.19049 0.89535 0.89885 0.89705 0.91826 0.93090 0.92134 0.94331 0.95625 0.92856 0.91944 0.94458 0.86786 0.91897 0.91690 0.89649 0.86849 0.85603 0.80814 0.81440 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.13 -4.98 5.67 30.60 0.17 -4.80 16 3 C 0.14 5.47 5.72 86.38 0.49 5.97 16 4 N -0.59 -27.22 2.07 -706.34 -1.46 -28.69 16 5 C -0.24 -12.43 9.70 84.03 0.81 -11.62 16 6 H 0.08 3.82 7.84 -2.91 -0.02 3.79 16 7 C -0.04 -2.05 5.41 84.86 0.46 -1.59 16 8 N -0.93 -48.58 8.21 21.65 0.18 -48.40 16 9 Si 0.96 44.09 29.56 68.60 2.03 46.12 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.31 -14.72 7.11 99.48 0.71 -14.02 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 C 0.16 6.83 3.29 85.63 0.28 7.12 16 14 C 0.54 23.21 5.76 87.66 0.50 23.72 16 15 O -0.54 -27.61 14.17 -3.04 -0.04 -27.65 16 16 N -0.56 -19.40 3.13 -629.46 -1.97 -21.37 16 17 C 0.09 2.58 7.06 86.62 0.61 3.19 16 18 C -0.07 -1.19 6.94 30.26 0.21 -0.98 16 19 C -0.15 -3.42 6.23 -19.63 -0.12 -3.55 16 20 C 0.00 0.09 9.55 22.26 0.21 0.31 16 21 C -0.10 -2.55 6.86 36.39 0.25 -2.30 16 22 N 0.04 1.27 4.45 -46.43 -0.21 1.07 16 23 O -0.18 -5.18 18.46 18.88 0.35 -4.83 16 24 O -0.20 -5.91 18.46 18.89 0.35 -5.56 16 25 C -0.01 -0.23 9.53 22.19 0.21 -0.02 16 26 C -0.17 -4.76 8.88 22.51 0.20 -4.56 16 27 C 0.22 6.49 6.59 38.28 0.25 6.75 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.64 6.38 -2.39 -0.02 1.63 16 32 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.06 2.05 7.84 -2.39 -0.02 2.03 16 35 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 36 H 0.11 5.20 5.01 -2.39 -0.01 5.19 16 37 H 0.06 2.24 6.63 -2.39 -0.02 2.22 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.17 2.86 7.61 -2.91 -0.02 2.83 16 43 H 0.17 3.60 7.61 -2.92 -0.02 3.58 16 44 H 0.16 4.57 4.21 -2.91 -0.01 4.56 16 Total: -1.00 -65.11 361.59 5.52 -59.59 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.03 Total: 15.27 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.27 Total: 14.47 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -3.46 Total: -97.39 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: 0.65 Total: -38.05 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.11 5.52 -59.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123005939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.352 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds