Wall clock time and date at job start Tue Mar 31 2020 17:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.08995 * 109.47501 * 56.21811 * 3 2 1 5 5 C 1.50697 * 109.46801 * 176.21937 * 3 2 1 6 6 H 1.08006 * 119.99707 * 118.86061 * 5 3 2 7 7 C 1.37884 * 120.00294 * 298.85488 * 5 3 2 8 8 N 1.31512 * 119.99897 * 157.14703 * 7 5 3 9 9 Si 1.86799 * 119.99898 * 337.15189 * 7 5 3 10 10 H 1.48497 * 109.46835 * 269.99869 * 9 7 5 11 11 H 1.48505 * 109.46766 * 29.99590 * 9 7 5 12 12 H 1.48501 * 109.46944 * 149.99535 * 9 7 5 13 13 N 1.46498 * 109.47009 * 296.21705 * 3 2 1 14 14 C 1.34775 * 119.99978 * 85.00014 * 13 3 2 15 15 O 1.21360 * 119.99776 * 0.02562 * 14 13 3 16 16 C 1.49355 * 120.00013 * 180.02562 * 14 13 3 17 17 O 1.21377 * 120.00060 * 0.02562 * 16 14 13 18 18 N 1.34781 * 119.99848 * 180.02562 * 16 14 13 19 19 C 1.39727 * 119.99628 * 184.53506 * 18 16 14 20 20 C 1.38999 * 120.03612 * 142.33738 * 19 18 16 21 21 C 1.38125 * 120.06152 * 180.02562 * 20 19 18 22 22 C 1.38185 * 120.14720 * 359.97438 * 21 20 19 23 23 C 1.38919 * 120.08278 * 359.97438 * 22 21 20 24 24 N 1.39918 * 120.03452 * 179.97438 * 23 22 21 25 25 C 1.34778 * 120.00109 * 33.09389 * 24 23 22 26 26 C 1.50703 * 119.99933 * 185.09826 * 25 24 23 27 27 O 1.21285 * 120.00310 * 5.10537 * 25 24 23 28 28 C 1.38752 * 119.92817 * 359.75971 * 23 22 21 29 29 H 1.09002 * 109.47419 * 299.99925 * 1 2 3 30 30 H 1.09000 * 109.47673 * 60.00171 * 1 2 3 31 31 H 1.09006 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46929 * 239.99506 * 2 1 3 33 33 H 1.09004 * 109.46819 * 119.99616 * 2 1 3 34 34 H 0.97006 * 119.99988 * 354.96606 * 8 7 5 35 35 H 0.96997 * 120.00071 * 265.00550 * 13 3 2 36 36 H 0.96998 * 119.99690 * 4.53892 * 18 16 14 37 37 H 1.08000 * 119.96809 * 359.97215 * 20 19 18 38 38 H 1.08006 * 119.92720 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.96322 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.00062 * 213.09837 * 24 23 22 41 41 H 1.08995 * 109.47241 * 0.02562 * 26 25 24 42 42 H 1.09006 * 109.46780 * 120.00257 * 26 25 24 43 43 H 1.08997 * 109.47299 * 240.00048 * 26 25 24 44 44 H 1.08002 * 120.06590 * 180.25837 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6224 1.9756 0.8541 5 6 3.5440 1.4435 0.0937 6 1 4.1342 1.8772 -0.7001 7 6 4.1667 0.8908 1.1928 8 7 5.4126 0.4789 1.1047 9 14 3.2407 0.7270 2.8068 10 1 3.4422 1.9532 3.6197 11 1 1.7925 0.5486 2.5306 12 1 3.7511 -0.4511 3.5529 13 7 1.6274 2.1063 -1.2391 14 6 0.4081 2.6739 -1.3258 15 8 -0.3479 2.6355 -0.3773 16 6 -0.0127 3.3501 -2.5893 17 8 0.7432 3.3880 -3.5382 18 7 -1.2319 3.9181 -2.6758 19 6 -1.6625 4.4671 -3.8864 20 6 -2.9910 4.3394 -4.2749 21 6 -3.4170 4.8814 -5.4718 22 6 -2.5250 5.5525 -6.2863 23 6 -1.1961 5.6846 -5.9035 24 7 -0.2937 6.3638 -6.7293 25 6 -0.7146 7.4044 -7.4753 26 6 0.2277 8.0628 -8.4499 27 8 -1.8516 7.8110 -7.3622 28 6 -0.7658 5.1462 -4.6993 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8698 0.4962 0.2493 35 1 2.2318 2.1372 -1.9972 36 1 -1.8103 3.9458 -1.8977 37 1 -3.6905 3.8151 -3.6407 38 1 -4.4497 4.7806 -5.7717 39 1 -2.8614 5.9755 -7.2214 40 1 0.6350 6.0857 -6.7650 41 1 1.1962 7.5644 -8.4121 42 1 -0.1806 7.9869 -9.4577 43 1 0.3487 9.1132 -8.1851 44 1 0.2659 5.2512 -4.3976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128184994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:43 Heat of formation + Delta-G solvation = -75.679773 kcal Electronic energy + Delta-G solvation = -27935.923983 eV Core-core repulsion = 23853.500007 eV Total energy + Delta-G solvation = -4082.423977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13202 -40.44677 -39.06580 -37.98479 -35.83350 -35.36421 -34.31867 -32.53604 -31.52807 -31.17503 -30.14118 -28.74794 -27.55688 -25.02770 -23.04604 -22.88060 -22.32361 -20.91972 -20.27058 -19.71869 -18.99824 -18.11475 -17.42881 -17.20074 -16.55442 -16.41657 -15.95796 -15.68334 -15.50363 -15.26199 -14.74046 -14.23433 -14.00543 -13.95466 -13.66776 -13.38616 -13.27876 -13.04926 -12.77197 -12.60859 -12.50219 -12.39492 -12.19709 -11.91103 -11.83612 -11.28741 -10.99826 -10.93598 -10.80324 -10.55705 -10.33687 -10.14358 -10.00096 -9.73443 -9.30271 -9.24159 -8.65320 -8.38231 -8.34060 -8.20305 -6.68338 -4.29812 0.92867 1.09785 1.73029 2.22776 2.50300 2.75604 3.34706 3.39356 3.43685 3.53336 3.65006 3.95186 4.31507 4.36888 4.67780 4.75086 4.87560 4.94026 4.94688 5.03482 5.03796 5.21359 5.25609 5.38355 5.42748 5.93569 5.97849 5.99312 6.00032 6.12068 6.13661 6.20273 6.30972 6.54540 6.65390 6.76081 6.78513 6.86754 6.95992 7.03895 7.15901 7.23518 7.48911 7.72357 7.73892 8.15334 8.21886 8.44615 8.72541 9.36695 10.70667 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002442 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.110161 B =11464.137799 C =12454.080159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.248 3.752 4 H 0.047 0.953 5 C -0.630 4.630 6 H 0.065 0.935 7 C 0.048 3.952 8 N -0.887 5.887 9 Si 1.032 2.968 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.283 1.283 13 N -0.660 5.660 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.509 3.491 17 O -0.506 6.506 18 N -0.651 5.651 19 C 0.164 3.836 20 C -0.153 4.153 21 C -0.083 4.083 22 C -0.135 4.135 23 C 0.159 3.841 24 N -0.672 5.672 25 C 0.511 3.489 26 C -0.170 4.170 27 O -0.528 6.528 28 C -0.143 4.143 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.273 0.727 35 H 0.406 0.594 36 H 0.424 0.576 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.414 0.586 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 9.967 -15.887 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.145 3.855 4 H 0.065 0.935 5 C -0.667 4.667 6 H 0.083 0.917 7 C -0.161 4.161 8 N -0.518 5.518 9 Si 0.859 3.141 10 H -0.209 1.209 11 H -0.192 1.192 12 H -0.208 1.208 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.409 6.409 16 C 0.291 3.709 17 O -0.379 6.379 18 N -0.298 5.298 19 C 0.069 3.931 20 C -0.174 4.174 21 C -0.103 4.103 22 C -0.155 4.155 23 C 0.064 3.936 24 N -0.317 5.317 25 C 0.299 3.701 26 C -0.230 4.230 27 O -0.404 6.404 28 C -0.166 4.166 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.241 0.759 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.250 0.750 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.001 9.756 -14.230 22.219 hybrid contribution 0.485 0.331 -1.630 1.732 sum -13.516 10.087 -15.860 23.151 Atomic orbital electron populations 1.21899 0.97310 0.99268 1.01744 1.22261 0.93825 0.99304 1.01683 1.19300 0.95960 0.88541 0.81703 0.93484 1.21998 0.89208 1.45725 1.09799 0.91686 1.25644 0.96377 0.91767 1.02284 1.70827 1.12783 1.38844 1.29367 0.84241 0.76478 0.77482 0.75898 1.20935 1.19207 1.20844 1.46210 1.13662 1.52207 1.18841 1.19639 0.84296 0.81472 0.87205 1.90741 1.52449 1.59661 1.38017 1.20909 0.81715 0.78776 0.89457 1.90727 1.51459 1.57011 1.38724 1.43193 1.18047 1.56293 1.12279 1.17409 0.93157 0.95318 0.87198 1.20979 0.94600 1.03529 0.98285 1.20808 0.99562 0.96495 0.93385 1.21112 0.92117 1.00864 1.01436 1.17509 0.90370 0.95275 0.90401 1.43716 1.13088 1.31903 1.43038 1.21028 0.89088 0.79011 0.80952 1.21863 0.99176 1.02609 0.99308 1.90745 1.20335 1.62678 1.66620 1.20924 1.01488 1.00629 0.93526 0.92617 0.93768 0.94700 0.92739 0.91635 0.91736 0.75942 0.73742 0.85216 0.85118 0.84778 0.74951 0.90161 0.88260 0.88307 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.49 37.16 0.32 -2.43 16 2 C -0.13 -2.82 5.00 -26.73 -0.13 -2.95 16 3 C 0.25 5.66 1.81 -69.08 -0.12 5.53 16 4 H 0.05 1.15 6.26 -51.93 -0.33 0.82 16 5 C -0.63 -16.48 9.00 -34.44 -0.31 -16.79 16 6 H 0.07 1.80 7.98 -52.48 -0.42 1.38 16 7 C 0.05 1.29 5.21 -17.82 -0.09 1.20 16 8 N -0.89 -25.62 13.70 55.43 0.76 -24.86 16 9 Si 1.03 23.89 26.26 -169.99 -4.46 19.43 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.78 5.79 56.52 0.33 -5.45 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.66 -13.17 5.00 -55.40 -0.28 -13.45 16 14 C 0.50 9.01 6.40 -11.63 -0.07 8.94 16 15 O -0.53 -10.27 13.61 5.49 0.07 -10.20 16 16 C 0.51 8.02 7.71 -11.63 -0.09 7.93 16 17 O -0.51 -8.56 14.10 5.47 0.08 -8.49 16 18 N -0.65 -8.41 5.31 -10.31 -0.05 -8.46 16 19 C 0.16 2.03 6.24 -83.78 -0.52 1.51 16 20 C -0.15 -1.59 9.97 -39.34 -0.39 -1.98 16 21 C -0.08 -0.83 10.03 -39.64 -0.40 -1.23 16 22 C -0.13 -1.52 8.66 -39.35 -0.34 -1.86 16 23 C 0.16 1.84 6.28 -83.72 -0.53 1.31 16 24 N -0.67 -5.99 5.34 -9.88 -0.05 -6.04 16 25 C 0.51 4.64 7.68 -10.98 -0.08 4.55 16 26 C -0.17 -0.77 10.39 36.01 0.37 -0.40 16 27 O -0.53 -6.88 14.76 5.55 0.08 -6.79 16 28 C -0.14 -1.81 8.59 -39.19 -0.34 -2.15 16 29 H 0.05 1.09 7.77 -51.93 -0.40 0.69 16 30 H 0.04 0.82 5.68 -51.93 -0.29 0.53 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.44 5.17 -51.93 -0.27 1.17 16 34 H 0.27 7.80 8.73 -40.82 -0.36 7.45 16 35 H 0.41 7.78 8.01 -40.82 -0.33 7.46 16 36 H 0.42 4.79 8.30 -40.82 -0.34 4.45 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.13 1.54 6.38 -52.48 -0.33 1.21 16 40 H 0.41 2.61 8.66 -40.82 -0.35 2.26 16 41 H 0.08 0.20 7.92 -51.93 -0.41 -0.22 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.14 1.88 6.45 -52.49 -0.34 1.54 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -32.38 365.52 -6.66 -39.05 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.58 Total: 13.14 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.74 Total: 1.17 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.37 Total: -52.82 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: 0.23 Total: -25.48 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.46 Total: 19.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.38 -6.66 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128184994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.635 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds