Wall clock time and date at job start Tue Mar 31 2020 17:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.08995 * 109.47501 * 56.21811 * 3 2 1 5 5 C 1.50697 * 109.46801 * 176.21937 * 3 2 1 6 6 H 1.08006 * 119.99707 * 118.86061 * 5 3 2 7 7 C 1.37884 * 120.00294 * 298.85488 * 5 3 2 8 8 N 1.31512 * 119.99897 * 157.14703 * 7 5 3 9 9 Si 1.86799 * 119.99898 * 337.15189 * 7 5 3 10 10 H 1.48497 * 109.46835 * 269.99869 * 9 7 5 11 11 H 1.48505 * 109.46766 * 29.99590 * 9 7 5 12 12 H 1.48501 * 109.46944 * 149.99535 * 9 7 5 13 13 N 1.46498 * 109.47009 * 296.21705 * 3 2 1 14 14 C 1.34775 * 119.99978 * 85.00014 * 13 3 2 15 15 O 1.21360 * 119.99776 * 0.02562 * 14 13 3 16 16 C 1.49355 * 120.00013 * 180.02562 * 14 13 3 17 17 O 1.21377 * 120.00060 * 0.02562 * 16 14 13 18 18 N 1.34781 * 119.99848 * 180.02562 * 16 14 13 19 19 C 1.39727 * 119.99628 * 184.53506 * 18 16 14 20 20 C 1.38999 * 120.03612 * 142.33738 * 19 18 16 21 21 C 1.38125 * 120.06152 * 180.02562 * 20 19 18 22 22 C 1.38185 * 120.14720 * 359.97438 * 21 20 19 23 23 C 1.38919 * 120.08278 * 359.97438 * 22 21 20 24 24 N 1.39918 * 120.03452 * 179.97438 * 23 22 21 25 25 C 1.34778 * 120.00109 * 33.09389 * 24 23 22 26 26 C 1.50703 * 119.99933 * 185.09826 * 25 24 23 27 27 O 1.21285 * 120.00310 * 5.10537 * 25 24 23 28 28 C 1.38752 * 119.92817 * 359.75971 * 23 22 21 29 29 H 1.09002 * 109.47419 * 299.99925 * 1 2 3 30 30 H 1.09000 * 109.47673 * 60.00171 * 1 2 3 31 31 H 1.09006 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46929 * 239.99506 * 2 1 3 33 33 H 1.09004 * 109.46819 * 119.99616 * 2 1 3 34 34 H 0.97006 * 119.99988 * 354.96606 * 8 7 5 35 35 H 0.96997 * 120.00071 * 265.00550 * 13 3 2 36 36 H 0.96998 * 119.99690 * 4.53892 * 18 16 14 37 37 H 1.08000 * 119.96809 * 359.97215 * 20 19 18 38 38 H 1.08006 * 119.92720 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.96322 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.00062 * 213.09837 * 24 23 22 41 41 H 1.08995 * 109.47241 * 0.02562 * 26 25 24 42 42 H 1.09006 * 109.46780 * 120.00257 * 26 25 24 43 43 H 1.08997 * 109.47299 * 240.00048 * 26 25 24 44 44 H 1.08002 * 120.06590 * 180.25837 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6224 1.9756 0.8541 5 6 3.5440 1.4435 0.0937 6 1 4.1342 1.8772 -0.7001 7 6 4.1667 0.8908 1.1928 8 7 5.4126 0.4789 1.1047 9 14 3.2407 0.7270 2.8068 10 1 3.4422 1.9532 3.6197 11 1 1.7925 0.5486 2.5306 12 1 3.7511 -0.4511 3.5529 13 7 1.6274 2.1063 -1.2391 14 6 0.4081 2.6739 -1.3258 15 8 -0.3479 2.6355 -0.3773 16 6 -0.0127 3.3501 -2.5893 17 8 0.7432 3.3880 -3.5382 18 7 -1.2319 3.9181 -2.6758 19 6 -1.6625 4.4671 -3.8864 20 6 -2.9910 4.3394 -4.2749 21 6 -3.4170 4.8814 -5.4718 22 6 -2.5250 5.5525 -6.2863 23 6 -1.1961 5.6846 -5.9035 24 7 -0.2937 6.3638 -6.7293 25 6 -0.7146 7.4044 -7.4753 26 6 0.2277 8.0628 -8.4499 27 8 -1.8516 7.8110 -7.3622 28 6 -0.7658 5.1462 -4.6993 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8698 0.4962 0.2493 35 1 2.2318 2.1372 -1.9972 36 1 -1.8103 3.9458 -1.8977 37 1 -3.6905 3.8151 -3.6407 38 1 -4.4497 4.7806 -5.7717 39 1 -2.8614 5.9755 -7.2214 40 1 0.6350 6.0857 -6.7650 41 1 1.1962 7.5644 -8.4121 42 1 -0.1806 7.9869 -9.4577 43 1 0.3487 9.1132 -8.1851 44 1 0.2659 5.2512 -4.3976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128184994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:42 Heat of formation + Delta-G solvation = -100.086921 kcal Electronic energy + Delta-G solvation = -27936.982357 eV Core-core repulsion = 23853.500007 eV Total energy + Delta-G solvation = -4083.482350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23731 -41.42739 -40.30255 -39.08935 -37.35543 -36.49108 -35.29390 -34.47990 -33.16948 -31.84525 -31.05753 -29.48331 -29.30410 -26.37073 -24.36941 -23.85985 -23.66407 -22.14872 -21.41321 -21.20628 -20.39632 -19.43109 -18.70797 -18.26095 -17.79012 -17.35462 -17.18293 -16.86997 -16.56195 -16.43738 -15.88593 -15.52949 -15.15668 -15.03445 -14.91792 -14.61897 -14.50893 -14.45238 -14.16302 -13.94987 -13.57816 -13.43044 -13.18293 -13.04605 -12.88507 -12.66817 -12.56370 -12.42428 -12.28504 -11.92210 -11.75845 -11.44748 -11.22551 -11.18808 -10.98736 -10.69412 -10.46185 -10.01672 -9.56658 -9.08849 -8.83618 -6.44892 -0.09152 0.21893 0.53451 1.25537 1.50884 1.51455 1.53323 1.72458 2.04094 2.09513 2.44866 2.65883 2.75643 2.96019 3.40634 3.73751 3.92730 4.12254 4.15686 4.28956 4.33083 4.36611 4.42082 4.46294 4.49521 4.56751 4.62581 4.80277 5.03776 5.07186 5.11691 5.13642 5.15615 5.22487 5.25680 5.32777 5.40794 5.46099 5.52435 5.60841 5.88146 5.97289 5.99726 6.36719 6.43972 6.49930 6.69179 6.97951 7.03871 7.29023 8.54583 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002442 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.110161 B =11464.137799 C =12454.080159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C 0.253 3.747 4 H 0.038 0.962 5 C -0.629 4.629 6 H 0.037 0.963 7 C 0.003 3.997 8 N -0.919 5.919 9 Si 1.069 2.931 10 H -0.275 1.275 11 H -0.243 1.243 12 H -0.281 1.281 13 N -0.669 5.669 14 C 0.500 3.500 15 O -0.538 6.538 16 C 0.515 3.485 17 O -0.521 6.521 18 N -0.633 5.633 19 C 0.143 3.857 20 C -0.146 4.146 21 C -0.078 4.078 22 C -0.143 4.143 23 C 0.149 3.851 24 N -0.667 5.667 25 C 0.506 3.494 26 C -0.162 4.162 27 O -0.572 6.572 28 C -0.157 4.157 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.260 0.740 35 H 0.407 0.593 36 H 0.433 0.567 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.131 0.869 40 H 0.425 0.575 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 10.160 -16.369 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C 0.149 3.851 4 H 0.056 0.944 5 C -0.666 4.666 6 H 0.055 0.945 7 C -0.199 4.199 8 N -0.552 5.552 9 Si 0.890 3.110 10 H -0.201 1.201 11 H -0.166 1.166 12 H -0.206 1.206 13 N -0.318 5.318 14 C 0.280 3.720 15 O -0.417 6.417 16 C 0.297 3.703 17 O -0.396 6.396 18 N -0.280 5.280 19 C 0.049 3.951 20 C -0.166 4.166 21 C -0.097 4.097 22 C -0.164 4.164 23 C 0.054 3.946 24 N -0.313 5.313 25 C 0.297 3.703 26 C -0.221 4.221 27 O -0.451 6.451 28 C -0.180 4.180 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.242 0.758 36 H 0.273 0.727 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.149 0.851 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.343 9.970 -14.741 24.162 hybrid contribution 1.177 0.358 -1.606 2.023 sum -15.166 10.328 -16.348 24.575 Atomic orbital electron populations 1.21793 0.95060 1.00900 1.01503 1.22182 0.95779 0.97770 1.01317 1.19027 0.93570 0.89829 0.82691 0.94411 1.22158 0.91231 1.44477 1.08734 0.94479 1.26862 0.96383 0.91259 1.05390 1.70935 1.14059 1.41463 1.28743 0.83785 0.76823 0.77786 0.72625 1.20123 1.16625 1.20612 1.46036 1.14704 1.53030 1.18047 1.19928 0.83387 0.80744 0.87984 1.90729 1.52520 1.59755 1.38691 1.20323 0.82629 0.79158 0.88149 1.90734 1.52155 1.57907 1.38797 1.43013 1.16911 1.55083 1.13029 1.17629 0.94163 0.96253 0.87010 1.21239 0.93931 1.02922 0.98553 1.21169 1.00725 0.95122 0.92711 1.21277 0.92344 1.01084 1.01706 1.17668 0.91100 0.95353 0.90471 1.43799 1.13429 1.31675 1.42435 1.21879 0.89139 0.78436 0.80836 1.21911 0.99179 1.02710 0.98287 1.90718 1.22426 1.63922 1.68025 1.20898 1.01084 1.01708 0.94270 0.93086 0.93694 0.92168 0.92984 0.92224 0.93047 0.75752 0.72714 0.82666 0.82179 0.85144 0.73620 0.87702 0.87083 0.87514 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.49 71.98 0.61 -4.18 16 2 C -0.13 -5.45 5.00 30.59 0.15 -5.30 16 3 C 0.25 11.44 1.81 44.25 0.08 11.52 16 4 H 0.04 1.80 6.26 -2.39 -0.01 1.79 16 5 C -0.63 -33.46 9.00 25.60 0.23 -33.23 16 6 H 0.04 2.13 7.98 -2.91 -0.02 2.11 16 7 C 0.00 0.18 5.21 84.66 0.44 0.62 16 8 N -0.92 -54.33 13.70 21.45 0.29 -54.04 16 9 Si 1.07 47.70 26.26 68.60 1.80 49.51 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.24 -9.80 5.79 99.48 0.58 -9.22 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.67 -26.54 5.00 -447.54 -2.24 -28.78 16 14 C 0.50 17.70 6.40 87.24 0.56 18.26 16 15 O -0.54 -19.98 13.61 -3.28 -0.04 -20.02 16 16 C 0.52 15.79 7.71 87.24 0.67 16.46 16 17 O -0.52 -17.49 14.10 -3.33 -0.05 -17.54 16 18 N -0.63 -15.40 5.31 -304.89 -1.62 -17.02 16 19 C 0.14 3.35 6.24 38.19 0.24 3.59 16 20 C -0.15 -2.66 9.97 22.43 0.22 -2.44 16 21 C -0.08 -1.37 10.03 22.23 0.22 -1.15 16 22 C -0.14 -3.09 8.66 22.42 0.19 -2.89 16 23 C 0.15 3.36 6.28 38.14 0.24 3.60 16 24 N -0.67 -11.47 5.34 -303.56 -1.62 -13.09 16 25 C 0.51 8.78 7.68 87.66 0.67 9.45 16 26 C -0.16 -1.16 10.39 71.24 0.74 -0.42 16 27 O -0.57 -14.77 14.76 -3.05 -0.04 -14.82 16 28 C -0.16 -3.90 8.59 22.52 0.19 -3.71 16 29 H 0.05 1.85 7.77 -2.39 -0.02 1.83 16 30 H 0.04 1.57 5.68 -2.39 -0.01 1.55 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.52 5.17 -2.38 -0.01 2.51 16 34 H 0.26 15.50 8.73 -92.70 -0.81 14.70 16 35 H 0.41 15.85 8.01 -92.71 -0.74 15.11 16 36 H 0.43 8.90 8.30 -92.71 -0.77 8.13 16 37 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.13 2.92 6.38 -2.91 -0.02 2.90 16 40 H 0.43 5.04 8.66 -92.71 -0.80 4.24 16 41 H 0.10 0.23 7.92 -2.39 -0.02 0.22 16 42 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.13 3.46 6.45 -2.91 -0.02 3.44 16 Total: -1.00 -70.84 365.52 0.55 -70.28 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.40 Total: 35.33 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.47 Total: 10.18 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -5.18 Total: -112.92 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.14 Total: -52.38 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.80 Total: 49.51 kcal Total: -70.84 0.55 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128184994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.803 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds