Wall clock time and date at job start Tue Mar 31 2020 17:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46836 * 2 1 4 4 H 1.08998 * 109.47199 * 305.00036 * 3 2 1 5 5 C 1.50704 * 109.46829 * 185.00414 * 3 2 1 6 6 H 1.07995 * 119.99759 * 239.99825 * 5 3 2 7 7 C 1.37878 * 119.99923 * 60.00205 * 5 3 2 8 8 N 1.31515 * 120.00259 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99873 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46851 * 59.99766 * 9 7 5 11 11 H 1.48494 * 109.47134 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46976 * 300.00278 * 9 7 5 13 13 N 1.46496 * 109.47172 * 65.00645 * 3 2 1 14 14 C 1.34778 * 119.99583 * 274.99598 * 13 3 2 15 15 O 1.21275 * 120.00613 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99718 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.47113 * 305.00136 * 16 14 13 18 18 O 1.42905 * 109.47264 * 185.00138 * 16 14 13 19 19 C 1.53002 * 109.47292 * 64.99999 * 16 14 13 20 20 H 1.09000 * 109.47089 * 295.00077 * 19 16 14 21 21 O 1.42907 * 109.46886 * 55.00072 * 19 16 14 22 22 C 1.50699 * 109.47189 * 174.99632 * 19 16 14 23 23 N 1.30111 * 124.95370 * 304.69995 * 22 19 16 24 24 C 1.35785 * 109.64116 * 179.88809 * 23 22 19 25 25 C 1.39746 * 133.59565 * 180.13049 * 24 23 22 26 26 C 1.36603 * 119.88182 * 180.30234 * 25 24 23 27 27 C 1.38778 * 120.67345 * 359.95332 * 26 25 24 28 28 C 1.37862 * 120.44570 * 0.02562 * 27 26 25 29 29 C 1.38824 * 119.69049 * 359.97438 * 28 27 26 30 30 N 1.36040 * 124.94869 * 124.99927 * 22 19 16 31 31 H 0.97001 * 126.34524 * 359.94631 * 30 22 19 32 32 H 1.09000 * 109.47156 * 299.99667 * 1 2 3 33 33 H 1.08997 * 109.47762 * 59.99710 * 1 2 3 34 34 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 35 35 H 1.09009 * 109.46368 * 240.00390 * 2 1 3 36 36 H 1.08992 * 109.47322 * 120.00173 * 2 1 3 37 37 H 0.96996 * 119.99705 * 180.02562 * 8 7 5 38 38 H 0.96999 * 120.00300 * 94.99567 * 13 3 2 39 39 H 0.96702 * 113.99404 * 300.00033 * 18 16 14 40 40 H 0.96695 * 114.00042 * 59.99837 * 21 19 16 41 41 H 1.07994 * 120.06217 * 0.27798 * 25 24 23 42 42 H 1.07993 * 119.66326 * 179.97438 * 26 25 24 43 43 H 1.07994 * 119.77863 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.14886 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8889 0.6521 7 6 4.1431 0.8784 -1.2282 8 7 3.4060 0.3376 -2.1735 9 14 6.0048 0.8813 -1.3821 10 1 6.5975 0.1473 -0.2352 11 1 6.3976 0.2168 -2.6507 12 1 6.4993 2.2815 -1.3824 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3396 2.6319 0.4346 16 6 0.0368 3.3385 2.6546 17 1 0.1534 2.6389 3.4823 18 8 -1.3277 3.7553 2.5718 19 6 0.9295 4.5589 2.8887 20 1 1.9584 4.2326 3.0404 21 8 0.8659 5.4209 1.7507 22 6 0.4531 5.3029 4.1096 23 7 -0.7567 5.7478 4.2866 24 6 -0.8437 6.3663 5.4923 25 6 -1.8821 7.0062 6.1743 26 6 -1.6530 7.5519 7.4055 27 6 -0.3967 7.4774 7.9903 28 6 0.6424 6.8506 7.3360 29 6 0.4283 6.2902 6.0841 30 7 1.2269 5.6122 5.1849 31 1 2.1656 5.3959 5.2990 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8932 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 3.8291 -0.0608 -2.9501 38 1 2.2720 2.1230 1.9978 39 1 -1.5051 4.3803 1.8555 40 1 -0.0222 5.7501 1.5558 41 1 -2.8638 7.0696 5.7287 42 1 -2.4579 8.0459 7.9293 43 1 -0.2318 7.9134 8.9645 44 1 1.6181 6.7950 7.7958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275732607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:29 Heat of formation + Delta-G solvation = -64.659294 kcal Electronic energy + Delta-G solvation = -28779.195779 eV Core-core repulsion = 24697.249686 eV Total energy + Delta-G solvation = -4081.946093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41880 -39.83227 -37.98034 -37.04572 -35.61775 -34.79279 -33.36842 -32.53359 -31.29237 -30.55396 -30.16066 -28.69968 -26.94720 -24.96470 -22.98474 -22.62339 -22.29602 -21.07362 -20.51312 -19.44423 -18.45946 -17.83300 -17.81083 -17.35172 -16.35598 -16.13499 -15.75312 -15.43562 -15.12743 -14.72172 -14.60567 -14.41701 -14.13536 -14.12539 -13.33529 -13.25370 -13.01770 -12.69033 -12.31024 -12.14200 -12.06116 -11.79472 -11.62302 -11.50515 -11.31608 -11.20058 -11.03174 -10.92094 -10.84749 -10.40702 -10.32407 -10.20625 -10.05461 -9.65689 -9.09645 -8.93891 -8.62967 -8.52543 -8.36777 -7.89960 -6.15022 -4.24817 0.66673 1.27002 2.46569 2.51394 3.21305 3.22983 3.28705 3.29163 3.63585 3.68995 3.92763 4.15267 4.18240 4.33026 4.40820 4.55504 4.73398 4.81093 4.87845 5.08958 5.16171 5.17070 5.19669 5.36466 5.46508 5.57000 5.79911 6.12359 6.25291 6.27264 6.37617 6.43852 6.61427 6.63864 7.01232 7.02043 7.16295 7.23850 7.32048 7.38903 7.55060 7.61438 7.65220 7.70549 7.86794 8.14640 8.56535 8.72181 9.01415 9.42057 10.90211 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002754 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.882163 B =10165.034769 C =11122.673018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.484 3.516 15 O -0.532 6.532 16 C 0.067 3.933 17 H 0.124 0.876 18 O -0.514 6.514 19 C 0.163 3.837 20 H 0.127 0.873 21 O -0.528 6.528 22 C 0.254 3.746 23 N -0.454 5.454 24 C 0.045 3.955 25 C -0.059 4.059 26 C -0.132 4.132 27 C -0.102 4.102 28 C -0.113 4.113 29 C 0.048 3.952 30 N -0.592 5.592 31 H 0.424 0.576 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.099 0.901 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.385 0.615 39 H 0.379 0.621 40 H 0.385 0.615 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 11.937 18.919 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.267 3.733 15 O -0.410 6.410 16 C 0.002 3.998 17 H 0.141 0.859 18 O -0.318 6.318 19 C 0.101 3.899 20 H 0.145 0.855 21 O -0.333 6.333 22 C -0.014 4.014 23 N -0.175 5.175 24 C -0.074 4.074 25 C -0.079 4.079 26 C -0.152 4.152 27 C -0.122 4.122 28 C -0.134 4.134 29 C -0.062 4.062 30 N -0.204 5.204 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.217 0.783 39 H 0.228 0.772 40 H 0.234 0.766 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.635 11.232 17.910 21.879 hybrid contribution 2.088 0.319 0.575 2.189 sum -3.547 11.551 18.486 22.084 Atomic orbital electron populations 1.21841 0.98274 0.98135 1.01243 1.21949 0.92641 0.99807 1.02313 1.18799 0.94224 0.89116 0.80868 0.93178 1.21158 0.90625 1.39185 1.06336 0.92209 1.24879 0.98554 0.94806 0.95386 1.69878 1.35225 1.37427 1.09312 0.86528 0.84905 0.78299 0.77470 1.20219 1.21120 1.20182 1.46502 1.14173 1.55803 1.18571 1.20730 0.83252 0.80132 0.89182 1.90699 1.51092 1.59661 1.39536 1.22536 0.84421 0.94668 0.98222 0.85895 1.86682 1.22392 1.66314 1.56409 1.21027 1.00727 0.88302 0.79890 0.85527 1.86756 1.35448 1.66284 1.44782 1.24243 0.87002 0.99262 0.90880 1.70440 1.16629 1.14153 1.16306 1.19168 0.93131 1.02451 0.92601 1.20070 0.97617 0.96187 0.94019 1.20654 0.97431 1.01664 0.95498 1.20891 0.92482 0.99084 0.99731 1.19969 1.00131 1.01152 0.92152 1.18926 0.92468 1.00810 0.93992 1.43049 1.13047 1.48239 1.16020 0.73744 0.94309 0.93134 0.95808 0.88243 0.95057 0.92464 0.78292 0.77245 0.76573 0.85221 0.85372 0.85321 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.26 11.30 55.43 0.63 -23.63 16 9 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -13.41 4.98 -54.94 -0.27 -13.69 16 14 C 0.48 8.82 5.25 -10.98 -0.06 8.76 16 15 O -0.53 -11.71 13.46 -14.30 -0.19 -11.90 16 16 C 0.07 0.91 3.30 -27.88 -0.09 0.82 16 17 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 18 O -0.51 -7.56 11.51 -59.70 -0.69 -8.25 16 19 C 0.16 1.93 3.41 -27.88 -0.10 1.83 16 20 H 0.13 1.25 8.04 -51.93 -0.42 0.84 16 21 O -0.53 -7.10 12.80 -40.08 -0.51 -7.62 16 22 C 0.25 3.02 6.94 -154.82 -1.07 1.95 16 23 N -0.45 -6.16 9.97 -8.23 -0.08 -6.24 16 24 C 0.05 0.58 7.23 -84.70 -0.61 -0.04 16 25 C -0.06 -0.62 10.05 -39.61 -0.40 -1.02 16 26 C -0.13 -1.08 9.96 -39.97 -0.40 -1.48 16 27 C -0.10 -0.78 10.03 -39.52 -0.40 -1.18 16 28 C -0.11 -0.98 10.07 -39.50 -0.40 -1.38 16 29 C 0.05 0.53 7.30 -83.99 -0.61 -0.08 16 30 N -0.59 -5.85 6.23 -8.00 -0.05 -5.90 16 31 H 0.42 2.83 8.96 -40.82 -0.37 2.46 16 32 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 33 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 2.63 5.95 -51.92 -0.31 2.32 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.39 6.18 8.44 -40.82 -0.34 5.84 16 39 H 0.38 4.94 7.58 45.56 0.35 5.29 16 40 H 0.38 4.35 7.82 45.56 0.36 4.70 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -33.52 365.47 -9.53 -43.05 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -4.33 Total: 17.08 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.51 Total: -3.56 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.22 Total: -49.46 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.39 Total: -27.76 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.52 -9.53 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275732607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.607 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds