Wall clock time and date at job start Tue Mar 31 2020 17:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17412 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47226 * 226.57517 * 3 2 1 5 5 C 1.37095 * 119.99704 * 264.39137 * 4 3 2 6 6 H 1.08003 * 119.99919 * 196.17590 * 5 4 3 7 7 C 1.38950 * 120.00329 * 16.17485 * 5 4 3 8 8 N 1.31414 * 119.99944 * 20.84838 * 7 5 4 9 9 Si 1.86796 * 120.00162 * 200.85039 * 7 5 4 10 10 H 1.48506 * 109.47320 * 84.94124 * 9 7 5 11 11 H 1.48500 * 109.46977 * 204.94257 * 9 7 5 12 12 H 1.48502 * 109.47275 * 324.94415 * 9 7 5 13 13 C 1.34779 * 120.00323 * 84.38362 * 4 3 2 14 14 O 1.21285 * 120.00258 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99541 * 0.02562 * 13 4 3 16 16 N 1.46504 * 109.46826 * 179.97438 * 15 13 4 17 17 C 1.33863 * 124.19435 * 270.00008 * 16 15 13 18 18 O 1.21534 * 123.79293 * 359.96800 * 17 16 15 19 19 N 1.34685 * 112.42062 * 180.02562 * 17 16 15 20 20 C 1.46845 * 106.42564 * 359.97438 * 19 17 16 21 21 C 1.52463 * 110.53029 * 118.52959 * 20 19 17 22 22 C 1.53082 * 109.57196 * 64.21964 * 21 20 19 23 23 C 1.53012 * 109.41687 * 59.14980 * 22 21 20 24 24 C 1.53006 * 109.52311 * 299.54481 * 23 22 21 25 25 C 1.52475 * 110.52567 * 241.49036 * 20 19 17 26 26 C 1.34909 * 124.19502 * 89.99721 * 16 15 13 27 27 O 1.21238 * 127.25606 * 0.27159 * 26 16 15 28 28 H 4.40639 * 5.51345 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47380 * 106.56893 * 3 2 1 30 30 H 1.09005 * 109.47091 * 346.56824 * 3 2 1 31 31 H 0.96994 * 120.00115 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47342 * 60.00185 * 15 13 4 33 33 H 1.08997 * 109.47505 * 299.99522 * 15 13 4 34 34 H 0.96993 * 126.78539 * 179.97438 * 19 17 16 35 35 H 1.09003 * 109.45693 * 184.25326 * 21 20 19 36 36 H 1.08999 * 109.45383 * 304.19503 * 21 20 19 37 37 H 1.08997 * 109.48142 * 299.16902 * 22 21 20 38 38 H 1.08999 * 109.48971 * 179.13798 * 22 21 20 39 39 H 1.09001 * 109.46524 * 179.52878 * 23 22 21 40 40 H 1.09007 * 109.45096 * 59.55689 * 23 22 21 41 41 H 1.09004 * 109.47697 * 300.47322 * 24 23 22 42 42 H 1.08999 * 109.49034 * 180.44503 * 24 23 22 43 43 H 1.08998 * 109.45681 * 55.80741 * 25 20 19 44 44 H 1.09003 * 109.45340 * 175.76355 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.9503 1.0031 5 6 3.4713 2.2263 0.6321 6 1 4.0666 2.8408 1.2913 7 6 3.0474 2.7290 -0.5919 8 7 2.0197 2.1858 -1.2050 9 14 3.9383 4.1768 -1.3662 10 1 5.1100 3.6839 -2.1340 11 1 3.0143 4.8953 -2.2800 12 1 4.3990 5.1022 -0.3000 13 6 3.2511 0.5697 2.2908 14 8 3.6555 1.3558 3.1212 15 6 2.8807 -0.8330 2.6984 16 7 3.0959 -0.9959 4.1384 17 6 4.2454 -1.4100 4.6852 18 8 5.2357 -1.6961 4.0414 19 7 4.1810 -1.4751 6.0289 20 6 2.8250 -1.0514 6.4006 21 6 2.0904 -2.1785 7.1179 22 6 2.7965 -2.4912 8.4397 23 6 2.8180 -1.2359 9.3143 24 6 3.5785 -0.1221 8.5917 25 6 2.8755 0.1998 7.2705 26 6 2.1600 -0.7472 5.0778 27 8 1.0233 -0.3657 4.8984 28 1 -1.0500 -0.0001 -0.0003 29 1 3.0093 0.2939 -0.9850 30 1 3.0098 -0.9988 0.2387 31 1 1.7240 2.5364 -2.0596 32 1 3.5022 -1.5452 2.1557 33 1 1.8316 -1.0143 2.4647 34 1 4.8901 -1.7479 6.6319 35 1 1.0635 -1.8728 7.3184 36 1 2.0878 -3.0684 6.4885 37 1 3.8188 -2.8117 8.2388 38 1 2.2615 -3.2866 8.9585 39 1 3.3132 -1.4599 10.2592 40 1 1.7956 -0.9110 9.5082 41 1 4.5984 -0.4499 8.3903 42 1 3.6002 0.7693 9.2185 43 1 3.4250 0.9831 6.7484 44 1 1.8607 0.5420 7.4735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281042020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:51 Heat of formation + Delta-G solvation = -34.699933 kcal Electronic energy + Delta-G solvation = -29880.617827 eV Core-core repulsion = 25799.970869 eV Total energy + Delta-G solvation = -4080.646958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.83610 -40.63885 -39.85260 -39.10860 -37.27592 -36.80737 -35.05404 -34.04767 -33.10651 -31.91894 -30.86366 -30.06730 -28.22722 -26.48501 -25.22445 -23.79626 -23.61677 -22.17333 -21.14227 -20.35637 -19.76605 -19.07266 -18.75359 -18.32354 -17.67454 -17.38004 -16.76964 -16.64414 -16.44463 -16.29830 -16.11634 -15.69484 -15.33907 -15.24965 -15.18851 -14.58843 -14.48192 -14.05633 -14.01537 -13.70027 -13.56951 -13.35108 -13.29125 -13.25155 -12.82076 -12.52363 -12.24157 -12.19626 -12.16431 -11.79244 -11.53225 -11.44160 -11.41641 -11.26155 -11.10051 -10.94703 -10.69642 -10.50207 -10.29083 -9.92680 -8.37830 -5.99126 0.49373 1.00477 1.32621 1.40463 1.51063 1.75548 1.86055 2.04683 2.10863 2.28462 2.34485 2.80036 2.97189 3.08161 3.39972 3.54398 3.76919 3.81968 3.91263 4.04002 4.06428 4.08152 4.18327 4.27176 4.38792 4.46343 4.50233 4.59770 4.61433 4.78802 4.93208 4.99176 5.00777 5.14751 5.19189 5.32708 5.34531 5.37837 5.41542 5.52628 5.74249 5.93309 5.95790 6.25984 6.35889 7.01284 7.05367 7.09327 7.29345 7.82756 8.60280 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.003437 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.635713 B = 8144.259881 C = 8529.326937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C 0.228 3.772 4 N -0.440 5.440 5 C -0.355 4.355 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.987 3.013 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.280 1.280 13 C 0.422 3.578 14 O -0.622 6.622 15 C 0.116 3.884 16 N -0.564 5.564 17 C 0.704 3.296 18 O -0.577 6.577 19 N -0.692 5.692 20 C 0.140 3.860 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.116 4.116 26 C 0.523 3.477 27 O -0.494 6.494 28 H 0.234 0.766 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.275 0.725 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.451 0.549 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -12.463 16.710 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.162 4.162 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.482 4.482 6 H 0.091 0.909 7 C -0.197 4.197 8 N -0.503 5.503 9 Si 0.811 3.189 10 H -0.188 1.188 11 H -0.198 1.198 12 H -0.206 1.206 13 C 0.211 3.789 14 O -0.509 6.509 15 C -0.010 4.010 16 N -0.308 5.308 17 C 0.405 3.595 18 O -0.453 6.453 19 N -0.358 5.358 20 C 0.049 3.951 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.154 4.154 26 C 0.311 3.689 27 O -0.365 6.365 28 H 0.250 0.750 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.299 0.701 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.953 -11.986 16.373 20.314 hybrid contribution 0.334 1.235 -0.946 1.592 sum -0.619 -10.750 15.427 18.813 Atomic orbital electron populations 1.25180 0.96364 1.02762 1.01213 1.23372 0.94895 0.98228 0.99690 1.18452 0.84787 0.91604 0.94591 1.43849 1.55132 1.11517 1.05305 1.19558 1.33043 0.91727 1.03873 0.90894 1.25981 0.95325 1.01352 0.97039 1.70166 1.20606 1.42738 1.16781 0.85058 0.78440 0.77596 0.77848 1.18792 1.19815 1.20563 1.20873 0.84663 0.90750 0.82661 1.90476 1.52988 1.56241 1.51197 1.21377 1.04874 0.95903 0.78819 1.46056 1.14596 1.61413 1.08699 1.15998 0.82039 0.77410 0.84048 1.90950 1.32742 1.55890 1.65742 1.45356 1.15384 1.70864 1.04221 1.21157 0.82673 0.99547 0.91681 1.21751 1.00013 0.95015 0.97971 1.21551 1.01333 0.98745 0.93196 1.21614 1.01305 0.93996 0.98787 1.21538 0.99285 1.00481 0.93496 1.21716 1.03480 0.93409 0.96819 1.21512 0.84905 0.74554 0.87891 1.90748 1.17622 1.43129 1.84998 0.74966 0.87992 0.88361 0.91475 0.85073 0.86223 0.70080 0.88906 0.90453 0.90867 0.88888 0.89481 0.91146 0.91096 0.90022 0.93382 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.53 19.25 74.32 1.43 -8.10 16 2 C -0.16 -7.13 10.95 31.12 0.34 -6.79 16 3 C 0.23 10.18 4.91 84.57 0.42 10.60 16 4 N -0.44 -23.37 2.60 -645.42 -1.68 -25.05 16 5 C -0.35 -20.56 9.35 84.04 0.79 -19.78 16 6 H 0.07 4.59 7.36 -2.91 -0.02 4.57 16 7 C 0.01 0.39 4.90 84.93 0.42 0.80 16 8 N -0.87 -45.20 9.39 21.66 0.20 -44.99 16 9 Si 0.99 42.68 29.60 68.60 2.03 44.72 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.42 22.10 7.64 87.66 0.67 22.77 16 14 O -0.62 -37.35 16.07 -3.05 -0.05 -37.39 16 15 C 0.12 4.71 4.79 85.63 0.41 5.12 16 16 N -0.56 -21.31 2.10 -777.31 -1.63 -22.94 16 17 C 0.70 24.85 8.63 179.37 1.55 26.40 16 18 O -0.58 -23.99 17.48 -3.82 -0.07 -24.05 16 19 N -0.69 -16.77 5.24 -442.69 -2.32 -19.09 16 20 C 0.14 3.32 0.83 2.58 0.00 3.33 16 21 C -0.11 -1.73 4.98 30.44 0.15 -1.57 16 22 C -0.11 -1.03 5.82 30.63 0.18 -0.85 16 23 C -0.12 -1.09 5.91 30.60 0.18 -0.91 16 24 C -0.11 -1.49 5.82 30.62 0.18 -1.32 16 25 C -0.12 -2.56 4.98 30.45 0.15 -2.41 16 26 C 0.52 18.25 6.94 87.78 0.61 18.86 16 27 O -0.49 -19.92 17.77 -2.90 -0.05 -19.97 16 28 H 0.23 7.32 7.80 -4.42 -0.03 7.29 16 29 H 0.10 4.80 6.34 -2.39 -0.02 4.78 16 30 H 0.10 3.55 6.67 -2.38 -0.02 3.53 16 31 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 32 H 0.13 4.68 7.13 -2.39 -0.02 4.66 16 33 H 0.12 4.62 7.39 -2.39 -0.02 4.60 16 34 H 0.45 7.86 7.74 -92.71 -0.72 7.14 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 0.59 7.35 -2.39 -0.02 0.58 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.07 0.88 7.35 -2.38 -0.02 0.86 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -80.01 365.85 4.23 -75.78 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.32 Total: 26.86 kcal Atomic # 6 Polarization: 38.68 SS G_CDS: 7.47 Total: 46.15 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -5.43 Total: -112.08 kcal Atomic # 8 Polarization: -81.25 SS G_CDS: -0.17 Total: -81.42 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.72 kcal Total: -80.01 4.23 -75.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281042020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.080 kcal (2) G-P(sol) polarization free energy of solvation -80.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds