Wall clock time and date at job start Tue Mar 31 2020 17:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47407 * 2 1 4 4 H 1.08995 * 109.47150 * 182.23285 * 3 2 1 5 5 C 1.53004 * 109.46760 * 302.22957 * 3 2 1 6 6 C 1.52998 * 109.47351 * 294.79203 * 5 3 2 7 7 F 1.39902 * 109.47279 * 65.59627 * 6 5 3 8 8 F 1.39900 * 109.47383 * 185.60056 * 6 5 3 9 9 F 1.39898 * 109.47000 * 305.60395 * 6 5 3 10 10 C 1.50694 * 109.47477 * 62.22542 * 3 2 1 11 11 O 1.21284 * 120.00508 * 240.00274 * 10 3 2 12 12 N 1.34782 * 119.99580 * 60.00308 * 10 3 2 13 13 C 1.40157 * 119.99809 * 179.97438 * 12 10 3 14 14 C 1.40405 * 125.97554 * 0.32055 * 13 12 10 15 15 C 1.35244 * 107.87017 * 180.16699 * 14 13 12 16 16 C 1.50702 * 126.07134 * 179.85197 * 15 14 13 17 17 N 1.34970 * 107.85899 * 359.58852 * 15 14 13 18 18 C 1.46495 * 125.97753 * 180.22682 * 17 15 14 19 19 C 1.50704 * 109.47181 * 89.99899 * 18 17 15 20 20 H 1.07998 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99915 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00392 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99786 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46924 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46931 * 120.00291 * 23 21 19 26 26 H 1.48505 * 109.46854 * 240.00352 * 23 21 19 27 27 N 1.31222 * 125.97143 * 180.02562 * 13 12 10 28 28 H 1.08999 * 109.47274 * 306.14777 * 1 2 3 29 29 H 1.09000 * 109.47176 * 66.14522 * 1 2 3 30 30 H 1.09001 * 109.47592 * 186.14790 * 1 2 3 31 31 H 1.08995 * 109.47423 * 239.99107 * 2 1 3 32 32 H 1.09004 * 109.47066 * 119.99454 * 2 1 3 33 33 H 1.09005 * 109.47381 * 54.79077 * 5 3 2 34 34 H 1.08996 * 109.47428 * 174.78683 * 5 3 2 35 35 H 0.97004 * 120.00066 * 0.02562 * 12 10 3 36 36 H 1.08003 * 126.06772 * 0.05953 * 14 13 12 37 37 H 1.09003 * 109.46836 * 269.68843 * 16 15 14 38 38 H 1.09002 * 109.46770 * 149.69298 * 16 15 14 39 39 H 1.09000 * 109.46832 * 29.68972 * 16 15 14 40 40 H 1.08995 * 109.47559 * 209.99827 * 18 17 15 41 41 H 1.08997 * 109.47116 * 330.00418 * 18 17 15 42 42 H 0.97001 * 120.00517 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 -0.0400 5 6 1.4847 2.1797 -1.2203 6 6 2.0525 1.5544 -2.4960 7 9 1.5797 0.2438 -2.6233 8 9 1.6473 2.3061 -3.6042 9 9 3.4497 1.5412 -2.4270 10 6 1.5833 2.1369 1.2570 11 8 0.8827 3.1242 1.1842 12 7 1.9535 1.6606 2.4624 13 6 1.5292 2.3067 3.6315 14 6 0.7155 3.4492 3.6936 15 6 0.5380 3.7620 4.9974 16 6 -0.2661 4.9197 5.5306 17 7 1.2042 2.8499 5.7362 18 6 1.2732 2.8118 7.1991 19 6 0.1370 1.9787 7.7341 20 1 -0.5659 1.5228 7.0525 21 6 -0.0045 1.7976 9.0935 22 7 0.8517 2.3523 9.9235 23 14 -1.4124 0.7644 9.7566 24 1 -2.2292 0.2563 8.6251 25 1 -0.8655 -0.3814 10.5268 26 1 -2.2622 1.5975 10.6450 27 7 1.8187 1.9464 4.8597 28 1 -0.3634 0.6062 0.8298 29 1 -0.3633 0.4156 -0.9399 30 1 -0.3634 -1.0217 0.1101 31 1 1.8933 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 0.3976 2.1000 -1.2294 34 1 1.7715 3.2301 -1.1718 35 1 2.5142 0.8712 2.5206 36 1 0.3055 3.9844 2.8499 37 1 0.3788 5.7922 5.6356 38 1 -0.6817 4.6559 6.5032 39 1 -1.0768 5.1481 4.8388 40 1 2.2220 2.3725 7.5068 41 1 1.1973 3.8253 7.5929 42 1 0.7520 2.2252 10.8799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450328760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:17 Heat of formation + Delta-G solvation = -126.785565 kcal Electronic energy + Delta-G solvation = -28923.497962 eV Core-core repulsion = 24297.001132 eV Total energy + Delta-G solvation = -4626.496831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.47439 -47.96445 -47.90962 -40.93731 -39.80102 -36.08816 -34.98663 -33.41317 -31.52711 -31.00253 -30.86741 -27.67973 -26.50877 -26.33865 -23.80831 -23.49542 -22.47680 -20.63916 -19.86039 -19.18665 -18.91148 -18.61805 -17.59467 -16.74536 -16.39750 -16.26088 -16.10080 -15.56231 -15.25059 -14.79979 -14.58502 -14.50378 -14.33928 -14.24247 -14.05662 -14.01612 -13.86690 -13.43359 -13.26549 -13.00969 -12.58415 -12.52565 -12.38108 -12.19889 -12.05316 -11.77726 -11.50100 -11.46781 -11.33660 -11.12979 -11.08498 -10.88894 -10.48689 -10.28780 -9.98923 -9.63779 -9.56035 -8.68570 -8.00383 -7.52620 -6.29353 -4.37173 2.18479 2.32177 2.71691 2.83873 3.17579 3.25726 3.31307 3.46686 3.58935 3.63059 3.73895 3.84827 4.24348 4.28133 4.37750 4.48520 4.76854 4.94040 5.04470 5.06255 5.17646 5.37170 5.40477 5.45407 5.65875 5.73221 5.76776 5.88952 6.03421 6.05493 6.17640 6.41748 6.47433 6.65517 6.88395 7.00767 7.36834 7.55219 7.63469 7.84653 7.99574 8.11290 8.59024 8.71146 9.29559 10.77982 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002408 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.923342 B =11625.302109 C =12068.472491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.107 4.107 4 H 0.114 0.886 5 C -0.152 4.152 6 C 0.454 3.546 7 F -0.178 7.178 8 F -0.183 7.183 9 F -0.183 7.183 10 C 0.531 3.469 11 O -0.514 6.514 12 N -0.626 5.626 13 C 0.261 3.739 14 C -0.290 4.290 15 C 0.092 3.908 16 C -0.089 4.089 17 N -0.315 5.315 18 C 0.258 3.742 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.319 5.319 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.411 0.589 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -0.997 -22.452 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.174 4.174 3 C -0.129 4.129 4 H 0.132 0.868 5 C -0.191 4.191 6 C 0.400 3.600 7 F -0.160 7.160 8 F -0.164 7.164 9 F -0.165 7.165 10 C 0.317 3.683 11 O -0.388 6.388 12 N -0.273 5.273 13 C 0.009 3.991 14 C -0.321 4.321 15 C -0.039 4.039 16 C -0.147 4.147 17 N -0.098 5.098 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.149 5.149 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.246 0.754 36 H 0.177 0.823 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.342 -1.129 -21.487 21.644 hybrid contribution -0.617 -0.624 -0.091 0.882 sum 1.726 -1.753 -21.578 21.718 Atomic orbital electron populations 1.21874 0.94677 1.02686 1.02325 1.21916 0.97626 0.93154 1.04679 1.21317 1.03163 0.96772 0.91648 0.86779 1.22763 1.05006 1.02640 0.88643 1.20557 0.76083 0.76632 0.86719 1.93131 1.88202 1.38390 1.96265 1.93200 1.90344 1.76206 1.56675 1.93186 1.30405 1.96367 1.96526 1.20091 0.80263 0.84303 0.83685 1.90668 1.36298 1.25435 1.86420 1.42390 1.51529 1.30643 1.02766 1.18972 0.99298 0.94717 0.86130 1.21234 1.11962 1.02651 0.96260 1.21079 0.97229 0.94435 0.91187 1.20385 0.98359 0.93583 1.02422 1.49013 1.35330 1.17720 1.07715 1.19707 0.99617 0.99210 0.67455 1.21356 1.11705 1.32348 0.92075 0.91688 1.24931 0.96748 0.95691 0.96411 1.69923 1.35943 1.43620 1.03417 0.86307 0.81567 0.79913 0.78942 1.19565 1.20630 1.20613 1.77263 1.23952 1.16522 0.97197 0.92136 0.92283 0.91830 0.88967 0.90478 0.85943 0.86094 0.75357 0.82343 0.91048 0.89873 0.90602 0.92975 0.92757 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.09 37.16 0.34 -1.04 16 2 C -0.14 -1.03 5.05 -26.73 -0.14 -1.17 16 3 C -0.11 -0.89 2.41 -91.77 -0.22 -1.11 16 4 H 0.11 0.76 7.51 -51.93 -0.39 0.37 16 5 C -0.15 -1.18 3.93 -26.73 -0.11 -1.29 16 6 C 0.45 3.58 3.12 37.16 0.12 3.69 16 7 F -0.18 -1.44 13.80 2.25 0.03 -1.41 16 8 F -0.18 -1.61 17.32 2.25 0.04 -1.57 16 9 F -0.18 -1.54 16.49 2.25 0.04 -1.51 16 10 C 0.53 6.67 5.87 -10.99 -0.06 6.60 16 11 O -0.51 -7.94 13.05 5.55 0.07 -7.86 16 12 N -0.63 -8.88 5.33 -11.13 -0.06 -8.94 16 13 C 0.26 5.06 8.11 -154.39 -1.25 3.80 16 14 C -0.29 -5.71 9.52 -39.83 -0.38 -6.09 16 15 C 0.09 1.89 6.93 -82.28 -0.57 1.32 16 16 C -0.09 -1.48 9.89 36.01 0.36 -1.12 16 17 N -0.32 -7.30 3.59 -58.33 -0.21 -7.51 16 18 C 0.26 6.49 5.81 -5.19 -0.03 6.46 16 19 C -0.54 -14.53 9.39 -34.44 -0.32 -14.86 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 23 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.32 -7.13 12.59 31.44 0.40 -6.73 16 28 H 0.06 0.66 7.09 -51.93 -0.37 0.30 16 29 H 0.06 0.46 6.28 -51.93 -0.33 0.14 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.62 5.62 -51.93 -0.29 0.33 16 32 H 0.08 0.54 7.50 -51.93 -0.39 0.15 16 33 H 0.12 0.94 6.24 -51.93 -0.32 0.61 16 34 H 0.12 0.92 7.95 -51.93 -0.41 0.51 16 35 H 0.41 4.68 8.21 -40.82 -0.34 4.35 16 36 H 0.16 3.00 5.92 -52.48 -0.31 2.69 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.49 7.71 -51.93 -0.40 1.08 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.05 1.35 7.65 -51.93 -0.40 0.96 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -31.19 357.25 -6.14 -37.33 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.18 Total: 4.15 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.37 Total: -3.13 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.86 Total: -47.18 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.86 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.11 Total: -4.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.19 -6.14 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450328760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.456 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds