Wall clock time and date at job start Tue Mar 31 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47009 * 2 1 4 4 H 1.08997 * 109.47367 * 305.00105 * 3 2 1 5 5 C 1.53004 * 109.46972 * 185.00298 * 3 2 1 6 6 N 1.46501 * 109.46886 * 185.00473 * 5 3 2 7 7 S 1.65597 * 119.99849 * 165.00215 * 6 5 3 8 8 C 1.81404 * 104.45178 * 64.99640 * 7 6 5 9 9 O 1.42102 * 104.27842 * 181.06952 * 7 6 5 10 10 O 1.42102 * 104.27692 * 308.92457 * 7 6 5 11 11 N 1.46496 * 109.46943 * 65.00592 * 3 2 1 12 12 C 1.34774 * 119.99828 * 275.00062 * 11 3 2 13 13 O 1.21589 * 120.00228 * 359.97438 * 12 11 3 14 14 N 1.34783 * 119.99841 * 180.02562 * 12 11 3 15 15 C 1.46500 * 119.99648 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.46904 * 178.28232 * 15 14 12 17 17 C 1.50697 * 115.54876 * 65.13715 * 16 15 14 18 18 H 1.07994 * 120.00394 * 265.40278 * 17 16 15 19 19 C 1.37884 * 119.99726 * 85.40850 * 17 16 15 20 20 N 1.31521 * 119.99860 * 353.55523 * 19 17 16 21 21 Si 1.86794 * 119.99894 * 173.55002 * 19 17 16 22 22 H 1.48502 * 109.47243 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46707 * 120.00002 * 21 19 17 24 24 H 1.48502 * 109.47295 * 240.00110 * 21 19 17 25 25 C 1.53005 * 117.49512 * 279.46986 * 16 15 14 26 26 C 1.52998 * 117.49839 * 210.81054 * 16 15 14 27 27 H 1.08996 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47475 * 59.99269 * 1 2 3 29 29 H 1.09007 * 109.46811 * 299.99384 * 1 2 3 30 30 H 1.08997 * 109.47574 * 120.00328 * 2 1 3 31 31 H 1.09007 * 109.46811 * 240.00616 * 2 1 3 32 32 H 1.09006 * 109.46872 * 305.00171 * 5 3 2 33 33 H 1.08996 * 109.47292 * 65.00145 * 5 3 2 34 34 H 0.96995 * 119.99925 * 344.99851 * 6 5 3 35 35 H 1.08996 * 109.46617 * 59.99982 * 8 7 6 36 36 H 1.08995 * 109.47054 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.46814 * 299.99827 * 8 7 6 38 38 H 0.97000 * 120.00094 * 94.99314 * 11 3 2 39 39 H 0.97000 * 120.00082 * 359.97438 * 14 12 11 40 40 H 1.08997 * 109.47184 * 298.28136 * 15 14 12 41 41 H 1.08995 * 109.47384 * 58.28267 * 15 14 12 42 42 H 0.97002 * 119.99710 * 185.05665 * 20 19 17 43 43 H 1.08991 * 117.50009 * 359.97438 * 25 16 15 44 44 H 1.08996 * 117.49421 * 145.01908 * 25 16 15 45 45 H 1.08997 * 117.49772 * 214.97808 * 26 16 15 46 46 H 1.09007 * 117.49871 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0059 7 16 5.6727 3.0924 0.2683 8 6 6.4981 2.4785 -1.2259 9 8 5.7772 4.5072 0.3502 10 8 5.9841 2.2691 1.3839 11 7 1.6525 2.0974 1.2518 12 6 0.4352 2.6643 1.3671 13 8 -0.3412 2.6325 0.4320 14 7 0.0789 3.2672 2.5187 15 6 -1.2441 3.8838 2.6437 16 6 -1.4091 4.4556 4.0533 17 6 -0.4878 5.5953 4.4044 18 1 0.4414 5.3997 4.9187 19 6 -0.8314 6.8878 4.0690 20 7 -1.8976 7.1150 3.3333 21 14 0.2174 8.3162 4.6598 22 1 1.3524 7.7973 5.4646 23 1 0.7424 9.0625 3.4881 24 1 -0.6084 9.2243 5.4956 25 6 -1.7852 3.4810 5.1713 26 6 -2.8197 4.4793 4.6454 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.9954 0.8311 0.6658 33 1 3.8498 1.0378 -1.0961 34 1 3.4500 3.5641 -0.0872 35 1 6.1334 3.0276 -2.0939 36 1 7.5744 2.6222 -1.1315 37 1 6.2823 1.4174 -1.3502 38 1 2.2720 2.1230 1.9978 39 1 0.6985 3.2929 3.2646 40 1 -1.3416 4.6862 1.9125 41 1 -2.0134 3.1330 2.4639 42 1 -2.0987 8.0162 3.0360 43 1 -1.9155 2.4329 4.9026 44 1 -1.3666 3.6646 6.1608 45 1 -3.0812 5.3191 5.2891 46 1 -3.6303 4.0880 4.0305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458720180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:28 Heat of formation + Delta-G solvation = -82.881390 kcal Electronic energy + Delta-G solvation = -27628.039132 eV Core-core repulsion = 23680.746821 eV Total energy + Delta-G solvation = -3947.292311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.81414 -37.48712 -37.20375 -36.39935 -36.15335 -33.98778 -33.30409 -31.98098 -31.71514 -29.84155 -28.28976 -26.09137 -25.02594 -23.34547 -21.40839 -21.07147 -20.25165 -19.59651 -19.36135 -18.00799 -17.63544 -16.88851 -16.53825 -16.10925 -15.94858 -15.27822 -14.98305 -14.63289 -14.44886 -14.01763 -13.96260 -13.63635 -13.50260 -13.46392 -13.38217 -12.90257 -12.60822 -12.53056 -12.32763 -12.25528 -12.11466 -11.68600 -11.55905 -11.37996 -11.33548 -11.00963 -10.98746 -10.89276 -10.76044 -10.48616 -10.24772 -9.84332 -9.67099 -9.46844 -8.93067 -8.78969 -8.47051 -8.23300 -7.95353 -6.05207 -4.13407 -0.01430 2.43202 3.18729 3.28522 3.37675 3.40507 3.56000 3.79269 3.88922 4.33886 4.38733 4.40102 4.61104 4.77223 4.87477 5.00789 5.05119 5.19220 5.23363 5.26182 5.36379 5.44124 5.56847 5.77680 5.94065 6.03327 6.05545 6.25236 6.36483 6.49107 6.59267 6.63822 6.70449 6.71828 6.80876 6.88054 7.10812 7.35308 7.43528 7.49366 7.62364 7.84775 8.37112 8.68075 8.87731 9.22530 9.53616 11.02552 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.003747 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.383063 B = 7471.363434 C = 9491.524627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.095 0.905 5 C 0.106 3.894 6 N -1.117 6.117 7 S 2.615 3.385 8 C -0.676 4.676 9 O -0.955 6.955 10 O -0.956 6.956 11 N -0.748 5.748 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.721 5.721 15 C 0.184 3.816 16 C 0.028 3.972 17 C -0.499 4.499 18 H 0.060 0.940 19 C 0.075 3.925 20 N -0.874 5.874 21 Si 0.889 3.111 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.211 4.211 26 C -0.148 4.148 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.424 0.576 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.396 0.604 39 H 0.396 0.604 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.671 -14.131 -9.921 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.113 0.887 5 C -0.022 4.022 6 N -0.878 5.878 7 S 2.706 3.294 8 C -0.825 4.825 9 O -0.945 6.945 10 O -0.946 6.946 11 N -0.405 5.405 12 C 0.399 3.601 13 O -0.478 6.478 14 N -0.373 5.373 15 C 0.060 3.940 16 C 0.028 3.972 17 C -0.537 4.537 18 H 0.078 0.922 19 C -0.130 4.130 20 N -0.510 5.510 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.260 0.740 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.229 0.771 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.279 -13.736 -10.031 21.578 hybrid contribution 0.816 0.908 0.196 1.237 sum 14.095 -12.828 -9.836 21.447 Atomic orbital electron populations 1.21759 0.94212 1.00083 1.03897 1.21943 0.97887 0.95460 1.01910 1.20937 0.91563 0.93913 0.88327 0.88670 1.21693 0.95612 0.82546 1.02299 1.55537 1.27135 1.14020 1.91082 1.04742 0.73782 0.74382 0.76511 1.30555 1.14711 1.13526 1.23707 1.93654 1.85183 1.28999 1.86668 1.93620 1.83536 1.70701 1.46762 1.45125 1.16626 1.62220 1.16569 1.15991 0.81719 0.78568 0.83863 1.90880 1.51935 1.65822 1.39113 1.45184 1.19433 1.58804 1.13855 1.20824 0.80000 0.94454 0.98704 1.19050 0.95463 0.94752 0.87976 1.20376 1.04818 0.89555 1.38931 0.92187 1.24973 0.94660 0.98656 0.94668 1.69989 1.25543 1.21224 1.34281 0.86598 0.80383 0.82626 0.78763 1.19703 1.21013 1.20992 1.23014 1.07471 0.94233 1.00067 1.22487 0.92722 0.99744 1.03644 0.94082 0.92166 0.91710 0.91730 0.91412 0.89572 0.90515 0.73973 0.85233 0.85496 0.85495 0.77057 0.77087 0.91252 0.94815 0.92941 0.91689 0.90434 0.89869 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.51 37.16 0.32 -1.47 16 2 C -0.13 -1.23 5.61 -26.73 -0.15 -1.38 16 3 C 0.16 1.60 2.39 -67.93 -0.16 1.44 16 4 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 5 C 0.11 0.72 5.69 -4.04 -0.02 0.70 16 6 N -1.12 -8.95 5.63 -10.61 -0.06 -9.01 16 7 S 2.61 22.06 6.10 -107.50 -0.66 21.41 16 8 C -0.68 -2.85 10.89 101.05 1.10 -1.75 16 9 O -0.95 -12.47 18.08 -57.54 -1.04 -13.51 16 10 O -0.96 -11.18 17.50 -57.54 -1.01 -12.19 16 11 N -0.75 -9.52 4.69 -58.67 -0.28 -9.79 16 12 C 0.70 12.28 7.13 -86.91 -0.62 11.66 16 13 O -0.60 -12.30 13.48 5.29 0.07 -12.23 16 14 N -0.72 -13.67 5.48 -65.22 -0.36 -14.03 16 15 C 0.18 4.13 5.50 -4.04 -0.02 4.11 16 16 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 17 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 18 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 19 C 0.07 1.99 5.39 -17.81 -0.10 1.89 16 20 N -0.87 -24.36 12.91 55.43 0.72 -23.64 16 21 Si 0.89 20.95 29.55 -169.99 -5.02 15.92 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 26 C -0.15 -3.38 9.42 -26.69 -0.25 -3.63 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.83 7.84 -51.93 -0.41 0.43 16 29 H 0.06 1.01 5.65 -51.92 -0.29 0.72 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.09 0.55 7.69 -51.93 -0.40 0.15 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.42 3.90 8.54 -34.47 -0.29 3.61 16 35 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.40 4.50 8.62 -40.82 -0.35 4.15 16 39 H 0.40 7.01 8.38 -40.82 -0.34 6.67 16 40 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 46 H 0.06 1.41 8.14 -51.92 -0.42 0.99 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -35.18 391.46 -9.94 -45.12 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.52 Total: 11.87 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.69 Total: -5.82 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.02 Total: -56.48 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.98 Total: -37.92 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 22.06 SS G_CDS: -0.66 Total: 21.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.18 -9.94 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458720180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.761 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds