Wall clock time and date at job start Tue Mar 31 2020 17:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47009 * 2 1 4 4 H 1.08997 * 109.47367 * 305.00105 * 3 2 1 5 5 C 1.53004 * 109.46972 * 185.00298 * 3 2 1 6 6 N 1.46501 * 109.46886 * 185.00473 * 5 3 2 7 7 S 1.65597 * 119.99849 * 165.00215 * 6 5 3 8 8 C 1.81404 * 104.45178 * 64.99640 * 7 6 5 9 9 O 1.42102 * 104.27842 * 181.06952 * 7 6 5 10 10 O 1.42102 * 104.27692 * 308.92457 * 7 6 5 11 11 N 1.46496 * 109.46943 * 65.00592 * 3 2 1 12 12 C 1.34774 * 119.99828 * 275.00062 * 11 3 2 13 13 O 1.21589 * 120.00228 * 359.97438 * 12 11 3 14 14 N 1.34783 * 119.99841 * 180.02562 * 12 11 3 15 15 C 1.46500 * 119.99648 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.46904 * 178.28232 * 15 14 12 17 17 C 1.50697 * 115.54876 * 65.13715 * 16 15 14 18 18 H 1.07994 * 120.00394 * 265.40278 * 17 16 15 19 19 C 1.37884 * 119.99726 * 85.40850 * 17 16 15 20 20 N 1.31521 * 119.99860 * 353.55523 * 19 17 16 21 21 Si 1.86794 * 119.99894 * 173.55002 * 19 17 16 22 22 H 1.48502 * 109.47243 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46707 * 120.00002 * 21 19 17 24 24 H 1.48502 * 109.47295 * 240.00110 * 21 19 17 25 25 C 1.53005 * 117.49512 * 279.46986 * 16 15 14 26 26 C 1.52998 * 117.49839 * 210.81054 * 16 15 14 27 27 H 1.08996 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47475 * 59.99269 * 1 2 3 29 29 H 1.09007 * 109.46811 * 299.99384 * 1 2 3 30 30 H 1.08997 * 109.47574 * 120.00328 * 2 1 3 31 31 H 1.09007 * 109.46811 * 240.00616 * 2 1 3 32 32 H 1.09006 * 109.46872 * 305.00171 * 5 3 2 33 33 H 1.08996 * 109.47292 * 65.00145 * 5 3 2 34 34 H 0.96995 * 119.99925 * 344.99851 * 6 5 3 35 35 H 1.08996 * 109.46617 * 59.99982 * 8 7 6 36 36 H 1.08995 * 109.47054 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.46814 * 299.99827 * 8 7 6 38 38 H 0.97000 * 120.00094 * 94.99314 * 11 3 2 39 39 H 0.97000 * 120.00082 * 359.97438 * 14 12 11 40 40 H 1.08997 * 109.47184 * 298.28136 * 15 14 12 41 41 H 1.08995 * 109.47384 * 58.28267 * 15 14 12 42 42 H 0.97002 * 119.99710 * 185.05665 * 20 19 17 43 43 H 1.08991 * 117.50009 * 359.97438 * 25 16 15 44 44 H 1.08996 * 117.49421 * 145.01908 * 25 16 15 45 45 H 1.08997 * 117.49772 * 214.97808 * 26 16 15 46 46 H 1.09007 * 117.49871 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0059 7 16 5.6727 3.0924 0.2683 8 6 6.4981 2.4785 -1.2259 9 8 5.7772 4.5072 0.3502 10 8 5.9841 2.2691 1.3839 11 7 1.6525 2.0974 1.2518 12 6 0.4352 2.6643 1.3671 13 8 -0.3412 2.6325 0.4320 14 7 0.0789 3.2672 2.5187 15 6 -1.2441 3.8838 2.6437 16 6 -1.4091 4.4556 4.0533 17 6 -0.4878 5.5953 4.4044 18 1 0.4414 5.3997 4.9187 19 6 -0.8314 6.8878 4.0690 20 7 -1.8976 7.1150 3.3333 21 14 0.2174 8.3162 4.6598 22 1 1.3524 7.7973 5.4646 23 1 0.7424 9.0625 3.4881 24 1 -0.6084 9.2243 5.4956 25 6 -1.7852 3.4810 5.1713 26 6 -2.8197 4.4793 4.6454 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.9954 0.8311 0.6658 33 1 3.8498 1.0378 -1.0961 34 1 3.4500 3.5641 -0.0872 35 1 6.1334 3.0276 -2.0939 36 1 7.5744 2.6222 -1.1315 37 1 6.2823 1.4174 -1.3502 38 1 2.2720 2.1230 1.9978 39 1 0.6985 3.2929 3.2646 40 1 -1.3416 4.6862 1.9125 41 1 -2.0134 3.1330 2.4639 42 1 -2.0987 8.0162 3.0360 43 1 -1.9155 2.4329 4.9026 44 1 -1.3666 3.6646 6.1608 45 1 -3.0812 5.3191 5.2891 46 1 -3.6303 4.0880 4.0305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458720180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:27 Heat of formation + Delta-G solvation = -112.272628 kcal Electronic energy + Delta-G solvation = -27629.313631 eV Core-core repulsion = 23680.746821 eV Total energy + Delta-G solvation = -3948.566811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11090 -38.80415 -38.14594 -37.67333 -36.94337 -34.92119 -34.74215 -33.97188 -32.87155 -30.22105 -29.19178 -27.88374 -26.83694 -24.12115 -22.99240 -22.27175 -21.49560 -21.19294 -20.26039 -19.25152 -18.55449 -18.03777 -17.55553 -17.24036 -16.92786 -16.72931 -16.45787 -15.84774 -15.75870 -15.51352 -14.98974 -14.61393 -14.56473 -14.31374 -14.13684 -13.93082 -13.78170 -13.56333 -13.43785 -13.34890 -13.14903 -13.06675 -12.93578 -12.88108 -12.79597 -12.36308 -12.31415 -12.03554 -12.00089 -11.76952 -11.66299 -11.45402 -11.09073 -10.83855 -10.45706 -10.38131 -10.06497 -10.00042 -9.51069 -8.09935 -6.22078 -0.61210 1.39356 1.43635 1.52276 1.79628 1.97905 2.38389 2.42043 2.97892 3.18517 3.31881 3.38649 3.66627 3.68850 4.02759 4.16182 4.24368 4.27196 4.29973 4.48692 4.52435 4.58185 4.67185 4.68361 4.77305 4.86911 4.93599 5.00356 5.00673 5.07496 5.14184 5.16371 5.28451 5.33953 5.57992 5.62099 5.63565 5.73972 5.77806 5.83484 6.02810 6.23140 6.38397 6.84762 7.31743 7.47067 7.81621 8.97651 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.003747 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.383063 B = 7471.363434 C = 9491.524627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.154 3.846 4 H 0.078 0.922 5 C 0.106 3.894 6 N -1.122 6.122 7 S 2.618 3.382 8 C -0.648 4.648 9 O -1.012 7.012 10 O -0.996 6.996 11 N -0.731 5.731 12 C 0.698 3.302 13 O -0.630 6.630 14 N -0.722 5.722 15 C 0.204 3.796 16 C 0.006 3.994 17 C -0.502 4.502 18 H 0.060 0.940 19 C 0.028 3.972 20 N -0.906 5.906 21 Si 0.945 3.055 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.283 1.283 25 C -0.177 4.177 26 C -0.158 4.158 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.417 0.583 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.404 0.596 39 H 0.402 0.598 40 H 0.025 0.975 41 H 0.031 0.969 42 H 0.258 0.742 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 -16.480 -10.768 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.047 3.953 4 H 0.096 0.904 5 C -0.020 4.020 6 N -0.881 5.881 7 S 2.715 3.285 8 C -0.802 4.802 9 O -1.002 7.002 10 O -0.986 6.986 11 N -0.388 5.388 12 C 0.398 3.602 13 O -0.512 6.512 14 N -0.375 5.375 15 C 0.079 3.921 16 C 0.006 3.994 17 C -0.540 4.540 18 H 0.078 0.922 19 C -0.173 4.173 20 N -0.543 5.543 21 Si 0.771 3.229 22 H -0.189 1.189 23 H -0.215 1.215 24 H -0.208 1.208 25 C -0.214 4.214 26 C -0.197 4.197 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.252 0.748 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.176 0.824 38 H 0.239 0.761 39 H 0.237 0.763 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.794 -16.110 -10.824 25.023 hybrid contribution 0.071 1.539 0.368 1.584 sum 15.865 -14.572 -10.456 23.945 Atomic orbital electron populations 1.21695 0.96947 1.00035 1.01087 1.21926 0.95215 0.95093 1.04262 1.21211 0.94000 0.93958 0.86096 0.90394 1.21906 0.92691 0.82110 1.05307 1.55434 1.26901 1.14362 1.91446 1.04351 0.73747 0.72843 0.77595 1.30297 1.14711 1.15275 1.19902 1.93581 1.85953 1.32571 1.88111 1.93564 1.84014 1.70773 1.50285 1.45068 1.14747 1.60950 1.18019 1.16119 0.82823 0.78439 0.82865 1.90858 1.53362 1.66982 1.40022 1.44991 1.18507 1.59198 1.14836 1.20304 0.81797 0.92999 0.96978 1.19063 0.95534 0.95670 0.89163 1.20665 1.05000 0.90359 1.37989 0.92184 1.25634 0.95750 1.00939 0.94969 1.70103 1.27114 1.21389 1.35716 0.85718 0.79144 0.79971 0.78052 1.18932 1.21474 1.20849 1.22988 1.04541 0.94689 0.99160 1.22425 0.93033 1.00222 1.03973 0.92693 0.94203 0.95278 0.90515 0.87777 0.88555 0.85902 0.74814 0.83463 0.83962 0.82441 0.76060 0.76325 0.95702 0.95062 0.93247 0.89368 0.89753 0.91876 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.51 71.98 0.61 -2.80 16 2 C -0.13 -1.98 5.61 30.60 0.17 -1.81 16 3 C 0.15 2.78 2.39 45.00 0.11 2.89 16 4 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 5 C 0.11 1.08 5.69 86.38 0.49 1.57 16 6 N -1.12 -16.04 5.63 -187.48 -1.06 -17.10 16 7 S 2.62 40.31 6.10 -56.49 -0.34 39.97 16 8 C -0.65 -2.61 10.89 113.37 1.23 -1.38 16 9 O -1.01 -26.65 18.08 -127.65 -2.31 -28.96 16 10 O -1.00 -22.12 17.50 -127.65 -2.23 -24.35 16 11 N -0.73 -18.15 4.69 -457.81 -2.15 -20.30 16 12 C 0.70 24.96 7.13 179.05 1.28 26.24 16 13 O -0.63 -26.85 13.48 -3.99 -0.05 -26.90 16 14 N -0.72 -27.91 5.48 -478.52 -2.62 -30.53 16 15 C 0.20 9.48 5.50 86.38 0.48 9.95 16 16 C 0.01 0.31 1.38 -52.92 -0.07 0.23 16 17 C -0.50 -26.19 8.63 25.60 0.22 -25.97 16 18 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 19 C 0.03 1.51 5.39 84.66 0.46 1.97 16 20 N -0.91 -51.96 12.91 21.45 0.28 -51.69 16 21 Si 0.94 43.61 29.55 68.60 2.03 45.64 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 C -0.18 -7.13 9.96 30.62 0.30 -6.82 16 26 C -0.16 -7.30 9.42 30.62 0.29 -7.01 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 1.11 7.84 -2.39 -0.02 1.09 16 29 H 0.03 0.90 5.65 -2.38 -0.01 0.89 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 0.85 7.69 -2.38 -0.02 0.83 16 33 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.42 7.50 8.54 -96.75 -0.83 6.67 16 35 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.40 8.81 8.62 -92.71 -0.80 8.01 16 39 H 0.40 14.28 8.38 -92.71 -0.78 13.50 16 40 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 42 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 Total: -1.00 -80.59 391.46 -4.29 -84.88 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -1.40 Total: 32.28 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.57 Total: -2.94 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -5.55 Total: -119.62 kcal Atomic # 8 Polarization: -75.62 SS G_CDS: -4.60 Total: -80.21 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 40.31 SS G_CDS: -0.34 Total: 39.97 kcal Total: -80.59 -4.29 -84.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458720180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.390 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds