Wall clock time and date at job start Tue Mar 31 2020 17:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46961 * 2 1 4 4 N 1.46502 * 109.47008 * 119.99847 * 2 1 3 5 5 C 1.46498 * 119.99684 * 119.20970 * 4 2 1 6 6 C 1.50695 * 109.47258 * 269.99934 * 5 4 2 7 7 H 1.08004 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00205 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99816 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46849 * 60.00387 * 10 8 6 12 12 H 1.48499 * 109.46917 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47245 * 300.00276 * 10 8 6 14 14 C 1.34771 * 119.99978 * 299.21124 * 4 2 1 15 15 O 1.21281 * 120.00469 * 5.30853 * 14 4 2 16 16 C 1.50704 * 119.99670 * 185.31175 * 14 4 2 17 17 C 1.53006 * 109.46939 * 177.82441 * 16 14 4 18 18 C 1.50694 * 109.47268 * 179.97438 * 17 16 14 19 19 N 1.30928 * 126.40025 * 89.99807 * 18 17 16 20 20 C 1.35401 * 105.57525 * 179.97438 * 19 18 17 21 21 C 1.47729 * 126.44416 * 179.97438 * 20 19 18 22 22 C 1.35989 * 125.93498 * 180.02562 * 21 20 19 23 23 C 1.40820 * 106.74324 * 179.73828 * 22 21 20 24 24 C 1.34820 * 107.03555 * 0.36992 * 23 22 21 25 25 O 1.34195 * 108.67696 * 359.62538 * 24 23 22 26 26 N 1.31034 * 107.10158 * 0.24297 * 20 19 18 27 27 O 1.21294 * 110.04405 * 359.58025 * 26 20 19 28 28 H 1.08997 * 109.47336 * 306.61765 * 1 2 3 29 29 H 1.09005 * 109.47378 * 66.61693 * 1 2 3 30 30 H 1.09000 * 109.47125 * 186.61392 * 1 2 3 31 31 H 1.09000 * 109.46946 * 239.99648 * 2 1 3 32 32 H 1.08998 * 109.46795 * 173.88921 * 3 2 1 33 33 H 1.08996 * 109.46867 * 293.88672 * 3 2 1 34 34 H 1.09000 * 109.47047 * 53.88938 * 3 2 1 35 35 H 1.08998 * 109.47459 * 30.00076 * 5 4 2 36 36 H 1.09003 * 109.47245 * 150.00019 * 5 4 2 37 37 H 0.97004 * 120.00168 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.47405 * 57.82547 * 16 14 4 39 39 H 1.09001 * 109.47269 * 297.82125 * 16 14 4 40 40 H 1.09004 * 109.46891 * 59.99934 * 17 16 14 41 41 H 1.09001 * 109.46882 * 299.99921 * 17 16 14 42 42 H 1.08002 * 126.63123 * 359.96279 * 22 21 20 43 43 H 1.07993 * 126.48247 * 180.26337 * 23 22 21 44 44 H 1.07997 * 125.65768 * 179.88702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0618 6 6 1.9609 -3.1107 1.0271 7 1 0.8887 -3.0017 1.0976 8 6 2.5196 -4.3653 0.9042 9 7 3.8251 -4.4981 0.8179 10 14 1.4222 -5.8764 0.8619 11 1 0.4945 -5.7821 -0.2938 12 1 2.2613 -7.0938 0.7243 13 1 0.6384 -5.9544 2.1208 14 6 1.7059 -0.2209 2.4202 15 8 0.9429 0.7149 2.5341 16 6 2.3048 -0.8585 3.6473 17 6 1.8331 -0.1074 4.8941 18 6 2.4314 -0.7453 6.1213 19 7 3.5723 -0.4320 6.6820 20 6 3.6943 -1.2607 7.7458 21 6 4.8188 -1.3002 8.7031 22 6 4.9308 -2.1379 9.7685 23 6 6.1543 -1.8344 10.3962 24 6 6.7196 -0.8310 9.6953 25 8 5.9118 -0.5133 8.6719 26 7 2.6299 -2.0248 7.7630 27 8 1.8962 -1.7365 6.8412 28 1 -0.3634 0.6129 0.8248 29 1 -0.3634 0.4079 -0.9433 30 1 -0.3633 -1.0208 0.1184 31 1 1.8933 -0.5139 -0.8900 32 1 3.1244 1.4444 0.1094 33 1 1.7687 1.9237 -0.9396 34 1 1.5900 1.9869 0.8302 35 1 3.4222 -1.8346 0.1383 36 1 3.5266 -1.9609 1.9106 37 1 4.2182 -5.3807 0.7318 38 1 3.3921 -0.8141 3.5861 39 1 1.9865 -1.8993 3.7081 40 1 0.7457 -0.1519 4.9554 41 1 2.1514 0.9334 4.8333 42 1 4.2206 -2.8927 10.0722 43 1 6.5618 -2.3135 11.2740 44 1 7.6674 -0.3636 9.9179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:26 Heat of formation + Delta-G solvation = 43.664506 kcal Electronic energy + Delta-G solvation = -28160.803737 eV Core-core repulsion = 24083.554916 eV Total energy + Delta-G solvation = -4077.248820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.60434 -42.82279 -39.50632 -36.11791 -35.61652 -34.48589 -33.42410 -33.12029 -31.86905 -30.81986 -29.63862 -27.08769 -26.62985 -25.57937 -24.68126 -23.11345 -22.75197 -21.73826 -21.31644 -20.53585 -18.53672 -18.32018 -17.86965 -16.99815 -16.69237 -16.29068 -16.11162 -15.52229 -15.45513 -15.12034 -14.60969 -14.27621 -13.65814 -13.41953 -13.20841 -13.11754 -13.05532 -12.82473 -12.67432 -12.37815 -12.34721 -12.17416 -11.94657 -11.80676 -11.54956 -11.46366 -11.18535 -11.00511 -10.94866 -10.88891 -10.64553 -10.43556 -10.39244 -10.18191 -10.09491 -9.75838 -8.91587 -8.66830 -8.58520 -7.75903 -6.21579 -4.29581 0.63947 1.35495 2.07631 2.25734 2.68314 2.73944 3.22729 3.27354 3.28207 3.34779 3.43697 3.87487 4.12945 4.31112 4.64449 4.68273 4.75240 5.06419 5.11072 5.15352 5.24401 5.38333 5.46706 5.52456 5.60982 5.66539 5.68654 5.77654 5.83710 5.85556 6.06507 6.08147 6.09733 6.19027 6.26562 6.34078 6.44430 6.70712 6.72353 6.77158 6.84063 7.14191 7.53391 7.73340 8.01497 8.02062 8.30412 8.74940 8.94915 9.39008 10.84938 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.003138 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.664924 B = 8921.878415 C =10451.394362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.589 5.589 5 C 0.235 3.765 6 C -0.540 4.540 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.525 3.475 15 O -0.570 6.570 16 C -0.137 4.137 17 C -0.013 4.013 18 C 0.208 3.792 19 N -0.470 5.470 20 C 0.238 3.762 21 C 0.055 3.945 22 C -0.150 4.150 23 C -0.217 4.217 24 C -0.014 4.014 25 O -0.153 6.153 26 N -0.361 5.361 27 O 0.091 5.909 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 7.631 12.408 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.319 5.319 5 C 0.116 3.884 6 C -0.578 4.578 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.723 3.277 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.313 3.687 15 O -0.452 6.452 16 C -0.178 4.178 17 C -0.052 4.052 18 C -0.013 4.013 19 N -0.203 5.203 20 C -0.031 4.031 21 C 0.003 3.997 22 C -0.173 4.173 23 C -0.237 4.237 24 C -0.084 4.084 25 O -0.047 6.047 26 N -0.068 5.068 27 O 0.029 5.971 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.333 7.793 12.825 15.187 hybrid contribution -0.330 -1.336 -0.098 1.379 sum 2.003 6.457 12.727 14.411 Atomic orbital electron populations 1.22170 0.95540 1.02630 1.01751 1.20844 0.94342 0.92219 0.88157 1.22187 1.00896 0.96947 1.02237 1.48305 1.50999 1.28439 1.04183 1.19489 0.90057 0.80353 0.98539 1.21458 0.93777 0.90716 1.51858 0.91993 1.24943 0.95031 0.99087 0.94681 1.69907 1.09765 1.24158 1.49047 0.86594 0.80415 0.81839 0.78902 1.20076 1.21164 1.19982 1.19999 0.81079 0.82882 0.84692 1.90556 1.37261 1.30503 1.86924 1.21633 1.02951 1.02200 0.90970 1.20122 1.01923 0.99511 0.83654 1.28947 0.88511 0.87325 0.96483 1.72185 1.16142 1.24727 1.07200 1.22162 0.93706 0.92949 0.94275 1.18021 0.87472 0.97128 0.97043 1.21840 0.99199 1.01092 0.95139 1.21811 0.96566 1.01284 1.03989 1.24350 0.96742 0.99348 0.87961 1.84119 1.26124 1.50527 1.43901 1.74984 1.03720 1.20739 1.07360 1.85332 1.40359 1.42580 1.28854 0.90752 0.93206 0.92401 0.89916 0.93091 0.92650 0.90917 0.94659 0.94368 0.92432 0.88387 0.87041 0.86968 0.86507 0.82401 0.82473 0.77103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.01 37.16 0.33 -2.39 16 2 C 0.15 2.60 3.28 -67.93 -0.22 2.38 16 3 C -0.16 -2.53 9.01 37.16 0.33 -2.19 16 4 N -0.59 -11.51 2.41 -167.47 -0.40 -11.92 16 5 C 0.24 5.32 4.99 -5.20 -0.03 5.30 16 6 C -0.54 -13.50 9.39 -34.44 -0.32 -13.83 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 10 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.53 9.67 7.08 -10.99 -0.08 9.59 16 15 O -0.57 -10.81 12.37 5.56 0.07 -10.74 16 16 C -0.14 -2.22 4.17 -27.88 -0.12 -2.33 16 17 C -0.01 -0.17 5.13 -27.88 -0.14 -0.31 16 18 C 0.21 3.07 7.74 -12.98 -0.10 2.96 16 19 N -0.47 -7.67 11.58 -9.88 -0.11 -7.79 16 20 C 0.24 3.82 8.06 -156.04 -1.26 2.56 16 21 C 0.06 0.78 7.26 -36.51 -0.26 0.52 16 22 C -0.15 -1.76 10.82 -39.41 -0.43 -2.18 16 23 C -0.22 -1.96 10.89 -39.82 -0.43 -2.40 16 24 C -0.01 -0.13 12.08 29.52 0.36 0.23 16 25 O -0.15 -2.02 10.67 4.85 0.05 -1.97 16 26 N -0.36 -5.75 12.18 30.99 0.38 -5.37 16 27 O 0.09 1.39 11.29 17.99 0.20 1.60 16 28 H 0.07 1.31 6.27 -51.93 -0.33 0.99 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.46 7.79 -51.93 -0.40 1.06 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 35 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 36 H 0.04 0.89 6.39 -51.93 -0.33 0.56 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.10 1.60 7.48 -51.93 -0.39 1.22 16 39 H 0.11 1.94 8.10 -51.93 -0.42 1.52 16 40 H 0.11 1.36 8.08 -51.93 -0.42 0.94 16 41 H 0.12 1.49 8.12 -51.93 -0.42 1.07 16 42 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -29.79 378.48 -6.82 -36.61 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.96 Total: 2.56 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.46 Total: -0.49 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.60 Total: -48.55 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.32 Total: -11.12 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.79 -6.82 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.274 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds