Wall clock time and date at job start Tue Mar 31 2020 17:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46961 * 2 1 4 4 N 1.46502 * 109.47008 * 119.99847 * 2 1 3 5 5 C 1.46498 * 119.99684 * 119.20970 * 4 2 1 6 6 C 1.50695 * 109.47258 * 269.99934 * 5 4 2 7 7 H 1.08004 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00205 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99816 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46849 * 60.00387 * 10 8 6 12 12 H 1.48499 * 109.46917 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47245 * 300.00276 * 10 8 6 14 14 C 1.34771 * 119.99978 * 299.21124 * 4 2 1 15 15 O 1.21281 * 120.00469 * 5.30853 * 14 4 2 16 16 C 1.50704 * 119.99670 * 185.31175 * 14 4 2 17 17 C 1.53006 * 109.46939 * 177.82441 * 16 14 4 18 18 C 1.50694 * 109.47268 * 179.97438 * 17 16 14 19 19 N 1.30928 * 126.40025 * 89.99807 * 18 17 16 20 20 C 1.35401 * 105.57525 * 179.97438 * 19 18 17 21 21 C 1.47729 * 126.44416 * 179.97438 * 20 19 18 22 22 C 1.35989 * 125.93498 * 180.02562 * 21 20 19 23 23 C 1.40820 * 106.74324 * 179.73828 * 22 21 20 24 24 C 1.34820 * 107.03555 * 0.36992 * 23 22 21 25 25 O 1.34195 * 108.67696 * 359.62538 * 24 23 22 26 26 N 1.31034 * 107.10158 * 0.24297 * 20 19 18 27 27 O 1.21294 * 110.04405 * 359.58025 * 26 20 19 28 28 H 1.08997 * 109.47336 * 306.61765 * 1 2 3 29 29 H 1.09005 * 109.47378 * 66.61693 * 1 2 3 30 30 H 1.09000 * 109.47125 * 186.61392 * 1 2 3 31 31 H 1.09000 * 109.46946 * 239.99648 * 2 1 3 32 32 H 1.08998 * 109.46795 * 173.88921 * 3 2 1 33 33 H 1.08996 * 109.46867 * 293.88672 * 3 2 1 34 34 H 1.09000 * 109.47047 * 53.88938 * 3 2 1 35 35 H 1.08998 * 109.47459 * 30.00076 * 5 4 2 36 36 H 1.09003 * 109.47245 * 150.00019 * 5 4 2 37 37 H 0.97004 * 120.00168 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.47405 * 57.82547 * 16 14 4 39 39 H 1.09001 * 109.47269 * 297.82125 * 16 14 4 40 40 H 1.09004 * 109.46891 * 59.99934 * 17 16 14 41 41 H 1.09001 * 109.46882 * 299.99921 * 17 16 14 42 42 H 1.08002 * 126.63123 * 359.96279 * 22 21 20 43 43 H 1.07993 * 126.48247 * 180.26337 * 23 22 21 44 44 H 1.07997 * 125.65768 * 179.88702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0618 6 6 1.9609 -3.1107 1.0271 7 1 0.8887 -3.0017 1.0976 8 6 2.5196 -4.3653 0.9042 9 7 3.8251 -4.4981 0.8179 10 14 1.4222 -5.8764 0.8619 11 1 0.4945 -5.7821 -0.2938 12 1 2.2613 -7.0938 0.7243 13 1 0.6384 -5.9544 2.1208 14 6 1.7059 -0.2209 2.4202 15 8 0.9429 0.7149 2.5341 16 6 2.3048 -0.8585 3.6473 17 6 1.8331 -0.1074 4.8941 18 6 2.4314 -0.7453 6.1213 19 7 3.5723 -0.4320 6.6820 20 6 3.6943 -1.2607 7.7458 21 6 4.8188 -1.3002 8.7031 22 6 4.9308 -2.1379 9.7685 23 6 6.1543 -1.8344 10.3962 24 6 6.7196 -0.8310 9.6953 25 8 5.9118 -0.5133 8.6719 26 7 2.6299 -2.0248 7.7630 27 8 1.8962 -1.7365 6.8412 28 1 -0.3634 0.6129 0.8248 29 1 -0.3634 0.4079 -0.9433 30 1 -0.3633 -1.0208 0.1184 31 1 1.8933 -0.5139 -0.8900 32 1 3.1244 1.4444 0.1094 33 1 1.7687 1.9237 -0.9396 34 1 1.5900 1.9869 0.8302 35 1 3.4222 -1.8346 0.1383 36 1 3.5266 -1.9609 1.9106 37 1 4.2182 -5.3807 0.7318 38 1 3.3921 -0.8141 3.5861 39 1 1.9865 -1.8993 3.7081 40 1 0.7457 -0.1519 4.9554 41 1 2.1514 0.9334 4.8333 42 1 4.2206 -2.8927 10.0722 43 1 6.5618 -2.3135 11.2740 44 1 7.6674 -0.3636 9.9179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:25 Heat of formation + Delta-G solvation = 26.123735 kcal Electronic energy + Delta-G solvation = -28161.564362 eV Core-core repulsion = 24083.554916 eV Total energy + Delta-G solvation = -4078.009445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.78159 -43.66885 -41.01048 -37.36623 -37.04163 -35.79232 -34.96137 -34.21241 -33.38194 -32.08848 -30.59688 -28.91853 -27.94414 -26.89111 -25.75514 -24.80087 -24.04615 -22.68494 -22.50464 -21.57482 -19.80667 -19.39723 -19.21476 -18.60991 -18.03902 -17.67352 -17.18784 -16.97756 -16.60070 -16.36439 -16.29224 -15.65998 -15.02447 -14.63025 -14.51359 -14.23209 -14.04210 -14.00118 -13.86086 -13.67962 -13.60157 -13.57128 -13.42195 -13.20757 -13.10955 -12.79480 -12.70423 -12.63919 -12.40025 -12.22541 -12.11180 -12.04216 -11.72986 -11.62223 -11.53468 -11.03917 -10.62254 -10.35680 -9.55746 -9.38873 -8.19870 -6.34166 -0.42414 0.26294 1.23627 1.36638 1.42147 1.43236 1.50093 1.57390 1.69279 1.80917 2.28852 2.39423 2.51589 3.10708 3.14707 3.54755 3.82442 3.84240 3.87615 4.01151 4.03745 4.18911 4.33648 4.35502 4.45749 4.46831 4.58560 4.70681 4.77246 4.81248 4.85597 4.86586 4.91906 4.97190 5.02847 5.08885 5.09196 5.21503 5.37043 5.38400 5.49419 5.68999 5.90239 5.96808 6.07476 6.62099 6.85416 6.86091 7.33293 7.44876 8.84895 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.003138 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.664924 B = 8921.878415 C =10451.394362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 C -0.153 4.153 4 N -0.596 5.596 5 C 0.251 3.749 6 C -0.542 4.542 7 H 0.056 0.944 8 C 0.022 3.978 9 N -0.921 5.921 10 Si 0.950 3.050 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.524 3.476 15 O -0.572 6.572 16 C -0.130 4.130 17 C 0.000 4.000 18 C 0.213 3.787 19 N -0.492 5.492 20 C 0.233 3.767 21 C 0.003 3.997 22 C -0.141 4.141 23 C -0.221 4.221 24 C 0.002 3.998 25 O -0.177 6.177 26 N -0.376 5.376 27 O 0.086 5.914 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.018 0.982 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.164 0.836 43 H 0.192 0.808 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 8.099 13.305 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.326 5.326 5 C 0.130 3.870 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.179 4.179 9 N -0.561 5.561 10 Si 0.776 3.224 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.313 3.687 15 O -0.454 6.454 16 C -0.171 4.171 17 C -0.039 4.039 18 C -0.007 4.007 19 N -0.225 5.225 20 C -0.035 4.035 21 C -0.048 4.048 22 C -0.163 4.163 23 C -0.240 4.240 24 C -0.067 4.067 25 O -0.072 6.072 26 N -0.085 5.085 27 O 0.025 5.975 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.182 0.818 43 H 0.209 0.791 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.484 8.279 13.713 16.210 hybrid contribution -0.301 -1.435 -0.317 1.500 sum 2.183 6.844 13.396 15.201 Atomic orbital electron populations 1.22074 0.94759 1.01334 1.02938 1.21088 0.94990 0.93319 0.87229 1.22079 1.00494 0.95239 1.03290 1.48296 1.51021 1.27864 1.05439 1.19095 0.89771 0.81026 0.97141 1.21683 0.93719 0.91690 1.50966 0.92546 1.25623 0.96041 1.01636 0.94564 1.70003 1.11129 1.24637 1.50300 0.85718 0.78893 0.78814 0.78988 1.19531 1.21046 1.19638 1.20239 0.80867 0.82773 0.84801 1.90552 1.37289 1.30565 1.86971 1.21528 1.02567 1.01592 0.91428 1.20092 1.02748 0.99340 0.81740 1.29098 0.88187 0.86943 0.96440 1.72174 1.16842 1.25586 1.07901 1.22588 0.94220 0.92391 0.94328 1.18152 0.88372 0.99679 0.98561 1.22172 1.00129 0.99927 0.94120 1.22227 0.95372 1.01439 1.04933 1.25398 0.97010 0.98431 0.85873 1.84103 1.26425 1.51033 1.45625 1.74940 1.04148 1.21437 1.07971 1.85298 1.40433 1.42747 1.28979 0.91607 0.90386 0.94371 0.90355 0.93360 0.89908 0.91917 0.96351 0.95321 0.92490 0.88838 0.88416 0.85300 0.85407 0.81847 0.79109 0.72641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.01 71.98 0.65 -4.30 16 2 C 0.14 4.70 3.28 44.99 0.15 4.85 16 3 C -0.15 -4.47 9.01 71.98 0.65 -3.82 16 4 N -0.60 -23.38 2.41 -802.15 -1.93 -25.31 16 5 C 0.25 11.57 4.99 85.63 0.43 12.00 16 6 C -0.54 -27.41 9.39 25.60 0.24 -27.17 16 7 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.02 1.13 5.46 84.66 0.46 1.59 16 9 N -0.92 -50.71 13.29 21.45 0.28 -50.42 16 10 Si 0.95 41.63 29.54 68.60 2.03 43.65 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 C 0.52 19.23 7.08 87.66 0.62 19.85 16 15 O -0.57 -21.17 12.37 -3.03 -0.04 -21.21 16 16 C -0.13 -4.27 4.17 29.85 0.12 -4.15 16 17 C 0.00 -0.01 5.13 29.85 0.15 0.15 16 18 C 0.21 6.40 7.74 88.35 0.68 7.08 16 19 N -0.49 -16.45 11.58 -302.28 -3.50 -19.95 16 20 C 0.23 7.70 8.06 136.95 1.10 8.80 16 21 C 0.00 0.10 7.26 24.26 0.18 0.27 16 22 C -0.14 -3.18 10.82 22.38 0.24 -2.94 16 23 C -0.22 -3.41 10.89 22.12 0.24 -3.17 16 24 C 0.00 0.03 12.08 67.03 0.81 0.84 16 25 O -0.18 -4.58 10.67 -5.56 -0.06 -4.64 16 26 N -0.38 -12.31 12.18 -58.78 -0.72 -13.03 16 27 O 0.09 2.68 11.29 74.45 0.84 3.52 16 28 H 0.06 2.24 6.27 -2.39 -0.01 2.22 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 2.74 7.79 -2.39 -0.02 2.72 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.97 6.47 -2.39 -0.02 1.95 16 35 H 0.02 0.91 7.91 -2.39 -0.02 0.89 16 36 H 0.03 1.38 6.39 -2.39 -0.02 1.36 16 37 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.09 3.15 7.48 -2.39 -0.02 3.13 16 39 H 0.10 3.50 8.10 -2.39 -0.02 3.48 16 40 H 0.13 3.01 8.08 -2.39 -0.02 2.99 16 41 H 0.13 3.16 8.12 -2.39 -0.02 3.14 16 42 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.26 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -64.96 378.48 4.66 -60.30 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.02 Total: 17.21 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.73 Total: 9.87 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -5.86 Total: -108.71 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.74 Total: -22.33 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -64.96 4.66 -60.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.425 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds