Wall clock time and date at job start Tue Mar 31 2020 17:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47173 * 239.99788 * 2 1 3 5 5 H 1.08000 * 119.99817 * 237.80239 * 4 2 1 6 6 C 1.37881 * 119.99778 * 57.79436 * 4 2 1 7 7 N 1.31505 * 119.99859 * 6.81280 * 6 4 2 8 8 Si 1.86797 * 119.99681 * 186.80583 * 6 4 2 9 9 H 1.48505 * 109.46865 * 95.00286 * 8 6 4 10 10 H 1.48498 * 109.47281 * 214.99371 * 8 6 4 11 11 H 1.48499 * 109.47798 * 335.00161 * 8 6 4 12 12 C 1.53003 * 109.47179 * 120.00154 * 2 1 3 13 13 N 1.46504 * 109.46827 * 299.99681 * 12 2 1 14 14 C 1.34779 * 119.99995 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99937 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46767 * 182.68884 * 16 14 13 18 18 H 1.09005 * 109.47037 * 53.72688 * 17 16 14 19 19 N 1.46493 * 109.47623 * 293.72441 * 17 16 14 20 20 C 1.34955 * 126.03801 * 274.72039 * 19 17 16 21 21 C 1.35318 * 107.74630 * 179.83749 * 20 19 17 22 22 C 1.39869 * 107.91833 * 0.42105 * 21 20 19 23 23 N 1.30833 * 108.20392 * 359.73887 * 22 21 20 24 24 C 1.52999 * 109.46933 * 173.72195 * 17 16 14 25 25 F 1.39900 * 109.47210 * 174.69986 * 24 17 16 26 26 F 1.39900 * 109.47178 * 294.70150 * 24 17 16 27 27 F 1.39901 * 109.46977 * 54.69944 * 24 17 16 28 28 H 1.08996 * 109.47096 * 304.26148 * 1 2 3 29 29 H 1.08994 * 109.46970 * 64.25859 * 1 2 3 30 30 H 1.09005 * 109.47135 * 184.26093 * 1 2 3 31 31 H 1.09005 * 109.47406 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47388 * 299.99842 * 3 2 1 33 33 H 1.09000 * 109.47214 * 59.99888 * 3 2 1 34 34 H 0.97007 * 119.99673 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47625 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.47343 * 59.99315 * 12 2 1 37 37 H 0.96997 * 119.99969 * 0.02562 * 13 12 2 38 38 H 1.08996 * 109.47146 * 62.69232 * 16 14 13 39 39 H 1.08992 * 109.46975 * 302.68751 * 16 14 13 40 40 H 1.08005 * 126.12450 * 359.97438 * 20 19 17 41 41 H 1.07995 * 126.03537 * 180.16160 * 21 20 19 42 42 H 1.07999 * 125.89529 * 179.72149 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6822 -1.5674 -1.1317 6 6 1.6621 -0.2665 -2.4822 7 7 0.9828 0.8523 -2.6087 8 14 2.1257 -1.2544 -3.9983 9 1 0.9991 -2.1473 -4.3709 10 1 2.4160 -0.3287 -5.1226 11 1 3.3303 -2.0725 -3.7070 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5741 -1.4774 3.7809 16 6 1.3741 0.2188 4.9000 17 6 1.9381 -0.4626 6.1483 18 1 3.0240 -0.5203 6.0715 19 7 1.3840 -1.8141 6.2596 20 6 0.2072 -2.1451 6.8313 21 6 0.0606 -3.4863 6.7267 22 6 1.1908 -3.9933 6.0771 23 7 1.9847 -2.9919 5.7966 24 6 1.5571 0.3485 7.3883 25 9 1.9676 -0.3357 8.5375 26 9 2.1854 1.5975 7.3398 27 9 0.1697 0.5255 7.4216 28 1 -0.3633 0.5785 0.8493 29 1 -0.3633 0.4463 -0.9256 30 1 -0.3634 -1.0249 0.0764 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7227 1.1648 -3.4895 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2493 37 1 0.9938 0.7578 2.3564 38 1 0.2852 0.1772 4.9241 39 1 1.6975 1.2594 4.8766 40 1 -0.4932 -1.4617 7.2884 41 1 -0.7786 -4.0635 7.0855 42 1 1.3761 -5.0321 5.8470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597761892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:18 Heat of formation + Delta-G solvation = -104.475290 kcal Electronic energy + Delta-G solvation = -29779.065748 eV Core-core repulsion = 25153.536364 eV Total energy + Delta-G solvation = -4625.529384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.69591 -48.19849 -48.12292 -41.26703 -39.39640 -36.57088 -35.09358 -33.34232 -31.10661 -30.39095 -29.74819 -27.67588 -25.77782 -25.56209 -24.78336 -23.40609 -21.28802 -21.15641 -20.18462 -19.10702 -19.00136 -18.77223 -18.15552 -16.99701 -16.53862 -15.90339 -15.71648 -15.25223 -14.92673 -14.89264 -14.66739 -14.62176 -14.57054 -14.41370 -14.25007 -14.22073 -13.60781 -13.33868 -13.10416 -12.93923 -12.68148 -12.64680 -12.30815 -12.20138 -11.99392 -11.42275 -11.21548 -10.88958 -10.72300 -10.57940 -10.43619 -10.22724 -9.68689 -9.64665 -9.52187 -9.30491 -8.85092 -8.71338 -8.48201 -8.34799 -6.05990 -4.15314 1.66223 1.86878 2.23838 2.86602 2.92885 2.98733 3.26269 3.33915 3.35832 3.38481 3.66464 3.75736 4.15110 4.37727 4.43824 4.61842 4.87348 4.96557 5.10397 5.20726 5.22722 5.45126 5.67804 5.93347 6.17405 6.28227 6.45595 6.56592 6.72425 6.77055 6.78082 6.87688 6.95828 6.97295 7.30526 7.50027 7.66005 7.67402 7.95038 7.96431 8.10585 8.34936 8.59929 8.85221 9.50450 10.95322 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002933 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.121509 B = 9544.487027 C =10346.143155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.136 3.864 13 N -0.715 5.715 14 C 0.501 3.499 15 O -0.516 6.516 16 C -0.166 4.166 17 C 0.145 3.855 18 H 0.152 0.848 19 N -0.371 5.371 20 C 0.031 3.969 21 C -0.259 4.259 22 C 0.033 3.967 23 N -0.229 5.229 24 C 0.452 3.548 25 F -0.170 7.170 26 F -0.165 7.165 27 F -0.175 7.175 28 H 0.007 0.993 29 H 0.083 0.917 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.397 0.603 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 0.366 20.485 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.013 3.987 13 N -0.366 5.366 14 C 0.284 3.716 15 O -0.392 6.392 16 C -0.207 4.207 17 C 0.039 3.961 18 H 0.169 0.831 19 N -0.155 5.155 20 C -0.112 4.112 21 C -0.288 4.288 22 C -0.155 4.155 23 N -0.047 5.047 24 C 0.396 3.604 25 F -0.151 7.151 26 F -0.147 7.147 27 F -0.156 7.156 28 H 0.026 0.974 29 H 0.102 0.898 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.232 0.768 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.472 0.260 19.883 19.939 hybrid contribution -1.077 -0.130 -0.331 1.134 sum -2.549 0.130 19.553 19.719 Atomic orbital electron populations 1.21798 0.97856 0.98447 1.00663 1.18366 0.92681 0.92871 0.90614 1.21865 0.98596 0.98265 1.00111 1.20985 1.29954 1.13717 0.89873 0.92411 1.24871 0.95002 0.94741 0.98823 1.69813 1.39131 1.20098 1.23254 0.86572 0.78850 0.80030 0.82532 1.20723 1.21282 1.19839 1.21714 0.98124 0.95701 0.83131 1.46242 1.52761 1.31829 1.05803 1.19882 0.82011 0.85289 0.84376 1.90847 1.37146 1.24916 1.86292 1.22211 1.04108 1.01845 0.92538 1.21858 1.04125 0.79271 0.90856 0.83091 1.48147 1.15590 1.05215 1.46529 1.22792 0.90219 0.97891 1.00309 1.21497 1.02476 0.93475 1.11371 1.24083 0.93515 0.99172 0.98728 1.77862 1.20406 0.88832 1.17573 1.20468 0.75165 0.79184 0.85591 1.93256 1.90048 1.79297 1.52495 1.93249 1.82105 1.42823 1.96496 1.93183 1.30222 1.95413 1.96786 0.97397 0.89818 0.95568 0.95467 0.89310 0.97692 0.92995 0.92667 0.92772 0.76808 0.87171 0.86158 0.80826 0.83414 0.79870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.05 37.16 0.30 -2.56 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.87 8.10 37.15 0.30 -2.57 16 4 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.10 -17.82 -0.09 1.65 16 7 N -0.88 -23.28 9.39 55.43 0.52 -22.76 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.14 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.72 -11.90 4.99 -60.29 -0.30 -12.21 16 14 C 0.50 7.87 7.71 -10.98 -0.08 7.79 16 15 O -0.52 -9.98 13.74 5.56 0.08 -9.90 16 16 C -0.17 -1.77 5.08 -27.88 -0.14 -1.91 16 17 C 0.14 1.59 2.33 -67.94 -0.16 1.43 16 18 H 0.15 1.71 7.95 -51.93 -0.41 1.30 16 19 N -0.37 -4.82 3.04 -54.87 -0.17 -4.99 16 20 C 0.03 0.35 10.23 -17.22 -0.18 0.17 16 21 C -0.26 -2.88 10.80 -40.01 -0.43 -3.31 16 22 C 0.03 0.43 12.03 -17.37 -0.21 0.22 16 23 N -0.23 -3.56 10.60 30.62 0.32 -3.24 16 24 C 0.45 4.18 2.47 37.16 0.09 4.27 16 25 F -0.17 -1.76 16.93 2.25 0.04 -1.72 16 26 F -0.17 -1.47 16.91 2.25 0.04 -1.43 16 27 F -0.17 -1.51 14.36 2.25 0.03 -1.48 16 28 H 0.01 0.14 6.99 -51.93 -0.36 -0.23 16 29 H 0.08 2.05 6.06 -51.93 -0.31 1.74 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 2.18 6.00 -51.93 -0.31 1.87 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 34 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 5.90 6.19 -40.82 -0.25 5.65 16 38 H 0.11 1.04 7.88 -51.93 -0.41 0.63 16 39 H 0.12 0.96 7.80 -51.93 -0.40 0.55 16 40 H 0.17 1.51 6.24 -52.48 -0.33 1.19 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -30.08 352.46 -5.35 -35.43 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.23 Total: 5.70 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.97 Total: -4.27 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.38 Total: -43.19 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.63 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.08 -5.35 -35.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.047 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds