Wall clock time and date at job start Tue Mar 31 2020 17:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47173 * 239.99788 * 2 1 3 5 5 H 1.08000 * 119.99817 * 237.80239 * 4 2 1 6 6 C 1.37881 * 119.99778 * 57.79436 * 4 2 1 7 7 N 1.31505 * 119.99859 * 6.81280 * 6 4 2 8 8 Si 1.86797 * 119.99681 * 186.80583 * 6 4 2 9 9 H 1.48505 * 109.46865 * 95.00286 * 8 6 4 10 10 H 1.48498 * 109.47281 * 214.99371 * 8 6 4 11 11 H 1.48499 * 109.47798 * 335.00161 * 8 6 4 12 12 C 1.53003 * 109.47179 * 120.00154 * 2 1 3 13 13 N 1.46504 * 109.46827 * 299.99681 * 12 2 1 14 14 C 1.34779 * 119.99995 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99937 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46767 * 182.68884 * 16 14 13 18 18 H 1.09005 * 109.47037 * 53.72688 * 17 16 14 19 19 N 1.46493 * 109.47623 * 293.72441 * 17 16 14 20 20 C 1.34955 * 126.03801 * 274.72039 * 19 17 16 21 21 C 1.35318 * 107.74630 * 179.83749 * 20 19 17 22 22 C 1.39869 * 107.91833 * 0.42105 * 21 20 19 23 23 N 1.30833 * 108.20392 * 359.73887 * 22 21 20 24 24 C 1.52999 * 109.46933 * 173.72195 * 17 16 14 25 25 F 1.39900 * 109.47210 * 174.69986 * 24 17 16 26 26 F 1.39900 * 109.47178 * 294.70150 * 24 17 16 27 27 F 1.39901 * 109.46977 * 54.69944 * 24 17 16 28 28 H 1.08996 * 109.47096 * 304.26148 * 1 2 3 29 29 H 1.08994 * 109.46970 * 64.25859 * 1 2 3 30 30 H 1.09005 * 109.47135 * 184.26093 * 1 2 3 31 31 H 1.09005 * 109.47406 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47388 * 299.99842 * 3 2 1 33 33 H 1.09000 * 109.47214 * 59.99888 * 3 2 1 34 34 H 0.97007 * 119.99673 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47625 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.47343 * 59.99315 * 12 2 1 37 37 H 0.96997 * 119.99969 * 0.02562 * 13 12 2 38 38 H 1.08996 * 109.47146 * 62.69232 * 16 14 13 39 39 H 1.08992 * 109.46975 * 302.68751 * 16 14 13 40 40 H 1.08005 * 126.12450 * 359.97438 * 20 19 17 41 41 H 1.07995 * 126.03537 * 180.16160 * 21 20 19 42 42 H 1.07999 * 125.89529 * 179.72149 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6822 -1.5674 -1.1317 6 6 1.6621 -0.2665 -2.4822 7 7 0.9828 0.8523 -2.6087 8 14 2.1257 -1.2544 -3.9983 9 1 0.9991 -2.1473 -4.3709 10 1 2.4160 -0.3287 -5.1226 11 1 3.3303 -2.0725 -3.7070 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5741 -1.4774 3.7809 16 6 1.3741 0.2188 4.9000 17 6 1.9381 -0.4626 6.1483 18 1 3.0240 -0.5203 6.0715 19 7 1.3840 -1.8141 6.2596 20 6 0.2072 -2.1451 6.8313 21 6 0.0606 -3.4863 6.7267 22 6 1.1908 -3.9933 6.0771 23 7 1.9847 -2.9919 5.7966 24 6 1.5571 0.3485 7.3883 25 9 1.9676 -0.3357 8.5375 26 9 2.1854 1.5975 7.3398 27 9 0.1697 0.5255 7.4216 28 1 -0.3633 0.5785 0.8493 29 1 -0.3633 0.4463 -0.9256 30 1 -0.3634 -1.0249 0.0764 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7227 1.1648 -3.4895 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2493 37 1 0.9938 0.7578 2.3564 38 1 0.2852 0.1772 4.9241 39 1 1.6975 1.2594 4.8766 40 1 -0.4932 -1.4617 7.2884 41 1 -0.7786 -4.0635 7.0855 42 1 1.3761 -5.0321 5.8470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597761892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:17 Heat of formation + Delta-G solvation = -122.280639 kcal Electronic energy + Delta-G solvation = -29779.837846 eV Core-core repulsion = 25153.536364 eV Total energy + Delta-G solvation = -4626.301482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.42420 -48.89556 -48.87401 -42.17795 -40.70906 -38.21547 -36.08796 -34.98152 -32.82703 -31.39848 -30.68497 -28.67448 -27.56776 -27.38347 -26.35683 -24.32867 -22.19683 -22.14341 -21.33983 -20.60957 -19.89654 -19.73628 -18.96788 -18.19976 -17.71285 -17.45811 -16.92989 -16.51650 -16.27831 -15.88237 -15.84741 -15.58681 -15.43306 -15.21075 -15.01376 -14.98472 -14.86225 -14.72374 -14.64786 -14.21887 -13.98534 -13.67092 -13.48917 -13.30186 -13.14293 -13.06073 -12.88706 -12.64794 -12.60982 -12.26144 -12.13834 -11.51253 -11.48708 -11.26905 -10.85642 -10.70392 -10.47778 -10.38253 -9.90957 -9.59341 -8.04139 -6.18810 0.81752 1.02240 1.40642 1.40852 1.44628 1.52511 1.70162 1.97815 2.12118 2.41913 2.51515 2.72126 2.93993 3.19299 3.29246 3.59842 3.81791 3.90339 4.08218 4.25859 4.37736 4.44655 4.51566 4.62642 4.71366 4.84908 4.99465 5.05369 5.10538 5.11699 5.19080 5.37359 5.59616 5.65599 5.66999 5.67904 5.97862 6.14540 6.22240 6.43573 6.66107 6.75856 6.85140 7.34260 7.48656 8.94525 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002933 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.121509 B = 9544.487027 C =10346.143155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.941 3.059 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.155 3.845 13 N -0.711 5.711 14 C 0.499 3.501 15 O -0.554 6.554 16 C -0.154 4.154 17 C 0.139 3.861 18 H 0.142 0.858 19 N -0.378 5.378 20 C 0.030 3.970 21 C -0.264 4.264 22 C 0.023 3.977 23 N -0.285 5.285 24 C 0.467 3.533 25 F -0.176 7.176 26 F -0.160 7.160 27 F -0.166 7.166 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.036 0.964 36 H 0.031 0.969 37 H 0.409 0.591 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.201 0.799 41 H 0.174 0.826 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 1.440 22.002 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.768 3.232 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.031 3.969 13 N -0.363 5.363 14 C 0.284 3.716 15 O -0.432 6.432 16 C -0.194 4.194 17 C 0.034 3.966 18 H 0.160 0.840 19 N -0.162 5.162 20 C -0.112 4.112 21 C -0.293 4.293 22 C -0.165 4.165 23 N -0.104 5.104 24 C 0.411 3.589 25 F -0.157 7.157 26 F -0.141 7.141 27 F -0.148 7.148 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.246 0.754 38 H 0.149 0.851 39 H 0.173 0.827 40 H 0.217 0.783 41 H 0.191 0.809 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.806 1.357 21.417 21.643 hybrid contribution -0.662 -0.492 -0.764 1.124 sum -3.468 0.865 20.654 20.961 Atomic orbital electron populations 1.21633 0.97128 0.98170 1.00758 1.18365 0.93182 0.93200 0.90282 1.21689 0.97834 0.97667 1.00568 1.21272 1.30143 1.13731 0.91729 0.94053 1.25409 0.95204 0.95530 1.00788 1.69909 1.39385 1.20578 1.23607 0.85804 0.78353 0.78930 0.80075 1.20497 1.20794 1.20210 1.21160 0.96782 0.94680 0.84258 1.46041 1.53138 1.32060 1.05106 1.20669 0.80934 0.84784 0.85171 1.90849 1.38707 1.26732 1.86872 1.22201 1.05130 1.02749 0.89344 1.21931 1.03833 0.78987 0.91888 0.84036 1.48270 1.16053 1.05228 1.46649 1.23291 0.89880 0.98535 0.99537 1.21870 1.02676 0.93805 1.10930 1.24538 0.93876 0.99706 0.98351 1.77788 1.22459 0.90316 1.19798 1.20039 0.75405 0.78908 0.84526 1.93249 1.90195 1.79564 1.52715 1.93267 1.82091 1.42318 1.96410 1.93200 1.29541 1.95334 1.96694 0.94093 0.92275 0.96481 0.96497 0.91746 0.94202 0.93000 0.94571 0.95068 0.75407 0.85064 0.82654 0.78265 0.80859 0.78287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.05 71.98 0.58 -4.56 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.16 8.10 71.98 0.58 -4.57 16 4 C -0.53 -27.95 8.01 25.60 0.20 -27.75 16 5 H 0.04 2.25 7.75 -2.91 -0.02 2.23 16 6 C 0.03 1.61 5.10 84.66 0.43 2.04 16 7 N -0.90 -47.25 9.39 21.45 0.20 -47.05 16 8 Si 0.94 42.49 29.54 68.60 2.03 44.52 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.16 6.45 4.50 86.38 0.39 6.84 16 13 N -0.71 -22.55 4.99 -463.05 -2.31 -24.85 16 14 C 0.50 14.97 7.71 87.66 0.68 15.64 16 15 O -0.55 -21.51 13.74 -3.02 -0.04 -21.55 16 16 C -0.15 -2.83 5.08 29.85 0.15 -2.67 16 17 C 0.14 2.79 2.33 44.99 0.10 2.90 16 18 H 0.14 3.11 7.95 -2.38 -0.02 3.09 16 19 N -0.38 -9.33 3.04 -327.50 -1.00 -10.32 16 20 C 0.03 0.62 10.23 83.54 0.85 1.47 16 21 C -0.26 -5.39 10.80 21.99 0.24 -5.16 16 22 C 0.02 0.58 12.03 85.24 1.02 1.60 16 23 N -0.28 -8.89 10.60 -57.03 -0.60 -9.49 16 24 C 0.47 7.37 2.47 71.98 0.18 7.55 16 25 F -0.18 -3.29 16.93 44.97 0.76 -2.53 16 26 F -0.16 -2.35 16.91 44.97 0.76 -1.59 16 27 F -0.17 -2.27 14.36 44.97 0.65 -1.63 16 28 H 0.04 1.45 6.99 -2.39 -0.02 1.43 16 29 H 0.06 2.87 6.06 -2.39 -0.01 2.85 16 30 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.06 3.12 6.00 -2.39 -0.01 3.11 16 33 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 34 H 0.26 13.22 8.31 -92.70 -0.77 12.45 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.41 10.89 6.19 -92.71 -0.57 10.32 16 38 H 0.13 1.94 7.88 -2.39 -0.02 1.92 16 39 H 0.16 1.79 7.80 -2.39 -0.02 1.77 16 40 H 0.20 2.79 6.24 -2.91 -0.02 2.78 16 41 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -66.50 352.46 6.33 -60.17 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.49 Total: 18.74 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.39 Total: -4.42 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.71 Total: -91.72 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.04 Total: -21.55 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 2.17 Total: -5.75 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -66.50 6.33 -60.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.107 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds