Wall clock time and date at job start Tue Mar 31 2020 17:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21278 * 120.00264 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00152 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.47179 * 89.99784 * 12 11 9 14 14 H 1.08003 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00273 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99638 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00381 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47110 * 89.99914 * 17 15 13 19 19 H 1.48497 * 109.47513 * 209.99932 * 17 15 13 20 20 H 1.48499 * 109.47500 * 330.00439 * 17 15 13 21 21 C 1.46509 * 119.99552 * 359.97438 * 11 9 8 22 22 C 1.52998 * 109.46742 * 90.00475 * 21 11 9 23 23 F 1.39895 * 109.47257 * 59.99914 * 22 21 11 24 24 F 1.39900 * 109.46887 * 179.97438 * 22 21 11 25 25 F 1.39898 * 109.47284 * 299.99640 * 22 21 11 26 26 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 36 36 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 37 37 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 38 38 H 1.08999 * 109.46746 * 209.99489 * 12 11 9 39 39 H 1.08996 * 109.46702 * 329.99618 * 12 11 9 40 40 H 0.97001 * 120.00125 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46794 * 210.00088 * 21 11 9 42 42 H 1.08994 * 109.47243 * 330.00062 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4459 -1.2455 11 7 4.9825 -5.2860 -2.4684 12 6 6.0966 -5.7647 -1.6463 13 6 5.5610 -6.5970 -0.5100 14 1 4.4970 -6.7534 -0.4098 15 6 6.4291 -7.1588 0.4020 16 7 7.7246 -6.9679 0.2804 17 14 5.7651 -8.1899 1.8110 18 1 5.6825 -9.6111 1.3883 19 1 6.6729 -8.0734 2.9804 20 1 4.4120 -7.7053 2.1844 21 6 4.5110 -6.0867 -3.6011 22 6 5.2786 -5.6870 -4.8628 23 9 6.6454 -5.9135 -4.6684 24 9 4.8288 -6.4521 -5.9443 25 9 5.0639 -4.3306 -5.1292 26 7 2.3857 -2.0399 -1.2766 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.9883 0.8861 -2.6859 35 1 2.8977 -0.9843 -4.2880 36 1 2.4289 -4.3371 -2.9898 37 1 3.5791 -3.5005 -4.0602 38 1 6.7647 -6.3713 -2.2575 39 1 6.6447 -4.9121 -1.2454 40 1 8.3355 -7.3634 0.9218 41 1 4.6783 -7.1436 -3.3935 42 1 3.4461 -5.9104 -3.7525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748801320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:57 Heat of formation + Delta-G solvation = -112.068795 kcal Electronic energy + Delta-G solvation = -29581.609647 eV Core-core repulsion = 24955.750984 eV Total energy + Delta-G solvation = -4625.858663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.81816 -47.39285 -47.23936 -41.11837 -39.01306 -35.95145 -35.16165 -32.82607 -31.70690 -29.79630 -29.27135 -28.32668 -27.55955 -26.43989 -23.24834 -23.22153 -22.43980 -20.16363 -19.90114 -18.75961 -18.25679 -18.10045 -17.35409 -17.04544 -16.48074 -15.96993 -15.47304 -15.15482 -14.67857 -14.55556 -14.30356 -14.17632 -14.11266 -13.74684 -13.69256 -13.52322 -13.46143 -13.39462 -13.09842 -12.76463 -12.72355 -12.48826 -12.31456 -12.25697 -12.14036 -11.85530 -11.61934 -11.50279 -11.26440 -11.22084 -10.92204 -10.60663 -10.28318 -10.18415 -9.71106 -9.15510 -8.89789 -8.44412 -8.36971 -7.94327 -6.05482 -4.10567 2.10387 2.58113 2.88730 2.97323 3.30174 3.35538 3.37970 3.44068 3.62357 4.17512 4.28222 4.34089 4.44225 4.55296 4.65788 4.80101 4.82493 4.87964 5.06097 5.18258 5.25009 5.27285 5.31591 5.38460 5.43936 5.55329 5.60087 5.65352 5.73362 5.84892 5.87867 6.01337 6.20098 6.78777 6.96265 7.20816 7.35280 7.42880 7.89886 8.00326 8.15557 8.19641 8.85324 8.98572 9.54437 11.02910 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.009141 B = 0.004267 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.223103 B = 6560.365434 C = 8967.154066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 C -0.163 4.163 4 N -0.369 5.369 5 C 0.046 3.954 6 C -0.266 4.266 7 C 0.088 3.912 8 C -0.075 4.075 9 C 0.516 3.484 10 O -0.503 6.503 11 N -0.600 5.600 12 C 0.244 3.756 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.074 3.926 22 C 0.428 3.572 23 F -0.174 7.174 24 F -0.188 7.188 25 F -0.186 7.186 26 N -0.257 5.257 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 11.550 -9.280 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 C -0.221 4.221 4 N -0.152 5.152 5 C -0.099 4.099 6 C -0.295 4.295 7 C -0.080 4.080 8 C -0.117 4.117 9 C 0.301 3.699 10 O -0.376 6.376 11 N -0.332 5.332 12 C 0.126 3.874 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.055 4.055 22 C 0.371 3.629 23 F -0.156 7.156 24 F -0.170 7.170 25 F -0.167 7.167 26 N -0.078 5.078 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.184 0.816 35 H 0.162 0.838 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.147 0.853 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.153 11.511 -7.348 18.961 hybrid contribution 0.026 -0.191 -0.349 0.399 sum -13.128 11.319 -7.697 18.966 Atomic orbital electron populations 1.22226 0.93879 1.03279 1.02691 1.21209 0.94492 0.92664 0.86448 1.22179 1.02606 0.94086 1.03245 1.48846 1.50616 1.07651 1.08089 1.22303 1.02226 0.99588 0.85806 1.21307 1.14361 0.92497 1.01380 1.21530 0.99602 0.95467 0.91397 1.20405 0.97852 0.92604 1.00855 1.20168 0.83690 0.80950 0.85067 1.90728 1.63052 1.55069 1.28771 1.48197 1.36910 1.19569 1.28559 1.19460 0.82812 0.95784 0.89362 1.21404 0.93604 1.31140 1.10713 0.92239 1.24924 0.94745 0.96537 0.97754 1.69939 1.01739 1.44524 1.36888 0.86490 0.78936 0.80180 0.81782 1.20590 1.21119 1.19866 1.22617 0.98729 1.00871 0.83237 1.21780 0.79661 0.74572 0.86851 1.93221 1.33158 1.94158 1.95024 1.93156 1.89091 1.75777 1.58968 1.93084 1.94427 1.34359 1.94879 1.77518 1.18982 0.92312 1.18964 0.90685 0.92088 0.91580 0.87893 0.91726 0.90160 0.91323 0.81596 0.83764 0.87870 0.86692 0.94210 0.93429 0.92657 0.85259 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.52 37.16 0.35 -1.03 16 2 C 0.15 1.66 3.93 -67.93 -0.27 1.39 16 3 C -0.16 -1.28 8.84 37.16 0.33 -0.95 16 4 N -0.37 -5.32 3.52 -54.87 -0.19 -5.51 16 5 C 0.05 0.57 10.59 -17.22 -0.18 0.39 16 6 C -0.27 -3.72 10.72 -40.01 -0.43 -4.15 16 7 C 0.09 1.49 6.01 -82.41 -0.50 1.00 16 8 C -0.08 -1.19 4.76 -29.04 -0.14 -1.33 16 9 C 0.52 10.86 7.33 -10.99 -0.08 10.78 16 10 O -0.50 -13.08 15.14 5.56 0.08 -13.00 16 11 N -0.60 -12.35 2.37 -175.07 -0.42 -12.76 16 12 C 0.24 6.29 4.96 -5.20 -0.03 6.27 16 13 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.07 1.11 5.33 -4.04 -0.02 1.08 16 22 C 0.43 6.34 3.29 37.16 0.12 6.46 16 23 F -0.17 -3.08 16.22 2.25 0.04 -3.04 16 24 F -0.19 -2.49 17.32 2.25 0.04 -2.45 16 25 F -0.19 -2.74 14.29 2.25 0.03 -2.71 16 26 N -0.26 -4.79 11.92 33.67 0.40 -4.39 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.42 7.16 -51.93 -0.37 0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.17 1.38 7.27 -52.49 -0.38 1.00 16 35 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.10 1.37 7.40 -51.93 -0.38 0.98 16 37 H 0.12 1.54 5.46 -51.93 -0.28 1.26 16 38 H 0.04 1.04 7.25 -51.93 -0.38 0.66 16 39 H 0.05 1.41 7.42 -51.93 -0.39 1.02 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 1.87 8.07 -51.93 -0.42 1.45 16 42 H 0.11 1.25 6.44 -51.93 -0.33 0.92 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -36.00 364.58 -5.50 -41.50 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.44 Total: -0.67 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.26 Total: 6.49 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.53 Total: -48.42 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.00 -5.50 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748801320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.566 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds