Wall clock time and date at job start Tue Mar 31 2020 17:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21278 * 120.00264 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00152 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.47179 * 89.99784 * 12 11 9 14 14 H 1.08003 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00273 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99638 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00381 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47110 * 89.99914 * 17 15 13 19 19 H 1.48497 * 109.47513 * 209.99932 * 17 15 13 20 20 H 1.48499 * 109.47500 * 330.00439 * 17 15 13 21 21 C 1.46509 * 119.99552 * 359.97438 * 11 9 8 22 22 C 1.52998 * 109.46742 * 90.00475 * 21 11 9 23 23 F 1.39895 * 109.47257 * 59.99914 * 22 21 11 24 24 F 1.39900 * 109.46887 * 179.97438 * 22 21 11 25 25 F 1.39898 * 109.47284 * 299.99640 * 22 21 11 26 26 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 36 36 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 37 37 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 38 38 H 1.08999 * 109.46746 * 209.99489 * 12 11 9 39 39 H 1.08996 * 109.46702 * 329.99618 * 12 11 9 40 40 H 0.97001 * 120.00125 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46794 * 210.00088 * 21 11 9 42 42 H 1.08994 * 109.47243 * 330.00062 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4459 -1.2455 11 7 4.9825 -5.2860 -2.4684 12 6 6.0966 -5.7647 -1.6463 13 6 5.5610 -6.5970 -0.5100 14 1 4.4970 -6.7534 -0.4098 15 6 6.4291 -7.1588 0.4020 16 7 7.7246 -6.9679 0.2804 17 14 5.7651 -8.1899 1.8110 18 1 5.6825 -9.6111 1.3883 19 1 6.6729 -8.0734 2.9804 20 1 4.4120 -7.7053 2.1844 21 6 4.5110 -6.0867 -3.6011 22 6 5.2786 -5.6870 -4.8628 23 9 6.6454 -5.9135 -4.6684 24 9 4.8288 -6.4521 -5.9443 25 9 5.0639 -4.3306 -5.1292 26 7 2.3857 -2.0399 -1.2766 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.9883 0.8861 -2.6859 35 1 2.8977 -0.9843 -4.2880 36 1 2.4289 -4.3371 -2.9898 37 1 3.5791 -3.5005 -4.0602 38 1 6.7647 -6.3713 -2.2575 39 1 6.6447 -4.9121 -1.2454 40 1 8.3355 -7.3634 0.9218 41 1 4.6783 -7.1436 -3.3935 42 1 3.4461 -5.9104 -3.7525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748801320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:56 Heat of formation + Delta-G solvation = -135.596906 kcal Electronic energy + Delta-G solvation = -29582.629903 eV Core-core repulsion = 24955.750984 eV Total energy + Delta-G solvation = -4626.878919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.04515 -48.58015 -48.51784 -42.20059 -40.64336 -37.05501 -36.65612 -34.89132 -32.95979 -30.91998 -30.82475 -29.62118 -28.27122 -28.09717 -25.02688 -24.54132 -23.56117 -21.42988 -20.92921 -20.11787 -19.50136 -19.39150 -18.95072 -18.28322 -17.99247 -17.59920 -17.09995 -16.27494 -16.16924 -15.95849 -15.49821 -15.41707 -15.33401 -14.95745 -14.86708 -14.79539 -14.67201 -14.56162 -14.36782 -14.28271 -13.81795 -13.67501 -13.56716 -13.30929 -13.26984 -13.08792 -12.98703 -12.89528 -12.76094 -12.54684 -12.33392 -12.22730 -12.05466 -11.76646 -11.41273 -10.76919 -10.63869 -10.14031 -9.74428 -9.41680 -8.23200 -6.37116 1.05557 1.36724 1.39975 1.49806 1.52374 1.64262 1.76004 1.93773 2.17672 2.39889 2.91773 3.07222 3.08183 3.27145 3.48317 3.70232 3.79316 3.94732 4.00680 4.08697 4.10007 4.25390 4.38512 4.48170 4.59646 4.64394 4.77657 4.82727 4.87569 4.94474 4.95264 5.14050 5.18192 5.20828 5.23351 5.43948 5.72952 5.75875 6.03046 6.29585 6.48321 6.71988 6.89845 7.24144 7.37754 8.84987 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.009141 B = 0.004267 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.223103 B = 6560.365434 C = 8967.154066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 C -0.154 4.154 4 N -0.372 5.372 5 C 0.058 3.942 6 C -0.281 4.281 7 C 0.063 3.937 8 C -0.062 4.062 9 C 0.509 3.491 10 O -0.565 6.565 11 N -0.604 5.604 12 C 0.263 3.737 13 C -0.543 4.543 14 H 0.059 0.941 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.284 1.284 20 H -0.275 1.275 21 C 0.068 3.932 22 C 0.436 3.564 23 F -0.195 7.195 24 F -0.173 7.173 25 F -0.183 7.183 26 N -0.321 5.321 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.212 0.788 35 H 0.170 0.830 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.032 0.968 39 H -0.004 1.004 40 H 0.267 0.733 41 H 0.136 0.864 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.878 12.273 -10.502 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 C -0.212 4.212 4 N -0.156 5.156 5 C -0.088 4.088 6 C -0.310 4.310 7 C -0.103 4.103 8 C -0.103 4.103 9 C 0.297 3.703 10 O -0.442 6.442 11 N -0.336 5.336 12 C 0.142 3.858 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.058 4.058 22 C 0.380 3.620 23 F -0.177 7.177 24 F -0.154 7.154 25 F -0.165 7.165 26 N -0.143 5.143 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.229 0.771 35 H 0.187 0.813 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.050 0.950 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.154 0.846 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.704 12.206 -8.623 21.679 hybrid contribution 0.802 -0.341 0.009 0.872 sum -14.902 11.866 -8.613 20.906 Atomic orbital electron populations 1.22158 0.91844 1.02367 1.04649 1.21555 0.96113 0.93734 0.84603 1.22162 1.01309 0.92176 1.05585 1.49169 1.50063 1.06645 1.09683 1.23018 1.00059 1.01147 0.84567 1.21682 1.14925 0.91669 1.02773 1.21858 1.00029 0.96729 0.91704 1.20427 0.96153 0.93088 1.00584 1.21149 0.84201 0.80175 0.84732 1.90692 1.65035 1.56833 1.31665 1.48050 1.35709 1.20282 1.29522 1.18850 0.84127 0.93219 0.89616 1.21697 0.93598 1.31233 1.11582 0.92305 1.25838 0.94956 0.97795 1.00416 1.70065 1.03044 1.45625 1.38023 0.85420 0.77891 0.79263 0.78248 1.18467 1.20965 1.19953 1.22996 1.01151 1.00432 0.81173 1.21561 0.78576 0.74770 0.87123 1.93189 1.34959 1.94311 1.95200 1.93190 1.88752 1.75370 1.58103 1.93086 1.94290 1.34241 1.94864 1.77403 1.21234 0.95208 1.20443 0.88142 0.90617 0.93891 0.90463 0.89461 0.87734 0.93266 0.77142 0.81287 0.85009 0.84040 0.94964 0.98563 0.92439 0.84554 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.52 71.98 0.69 -1.65 16 2 C 0.14 2.95 3.93 44.99 0.18 3.13 16 3 C -0.15 -2.10 8.84 71.98 0.64 -1.46 16 4 N -0.37 -10.56 3.52 -327.49 -1.15 -11.72 16 5 C 0.06 1.31 10.59 83.54 0.89 2.20 16 6 C -0.28 -7.36 10.72 21.99 0.24 -7.13 16 7 C 0.06 2.12 6.01 43.10 0.26 2.38 16 8 C -0.06 -1.88 4.76 29.10 0.14 -1.74 16 9 C 0.51 21.87 7.33 87.65 0.64 22.51 16 10 O -0.56 -31.00 15.14 -3.02 -0.05 -31.05 16 11 N -0.60 -25.23 2.37 -826.18 -1.96 -27.19 16 12 C 0.26 14.16 4.96 85.63 0.42 14.58 16 13 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 14 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 15 C 0.01 0.53 5.46 84.65 0.46 0.99 16 16 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 17 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 21 C 0.07 1.95 5.33 86.38 0.46 2.41 16 22 C 0.44 12.24 3.29 71.98 0.24 12.48 16 23 F -0.19 -6.90 16.22 44.97 0.73 -6.17 16 24 F -0.17 -4.13 17.32 44.97 0.78 -3.35 16 25 F -0.18 -5.05 14.29 44.97 0.64 -4.41 16 26 N -0.32 -12.22 11.92 -47.38 -0.56 -12.79 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 0.79 7.16 -2.39 -0.02 0.78 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.21 2.61 7.27 -2.91 -0.02 2.58 16 35 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.13 3.18 7.40 -2.39 -0.02 3.16 16 37 H 0.14 3.46 5.46 -2.38 -0.01 3.45 16 38 H 0.03 1.76 7.25 -2.39 -0.02 1.75 16 39 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.14 3.74 8.07 -2.39 -0.02 3.73 16 42 H 0.16 3.01 6.44 -2.39 -0.02 2.99 16 Total: -1.00 -84.54 364.58 7.27 -77.28 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.05 Total: 10.68 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 5.48 Total: 17.85 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.40 Total: -108.11 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 9 Polarization: -16.08 SS G_CDS: 2.15 Total: -13.93 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -84.54 7.27 -77.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748801320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.321 kcal (2) G-P(sol) polarization free energy of solvation -84.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds