Wall clock time and date at job start Tue Mar 31 2020 17:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 C 1.50707 * 109.46905 * 240.00505 * 2 1 3 5 5 H 1.07991 * 120.00046 * 239.99526 * 4 2 1 6 6 C 1.37883 * 119.99540 * 59.99602 * 4 2 1 7 7 N 1.31512 * 120.00422 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99536 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47014 * 59.99980 * 8 6 4 10 10 H 1.48501 * 109.46936 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47030 * 299.99863 * 8 6 4 12 12 C 1.52998 * 109.47603 * 120.00470 * 2 1 3 13 13 N 1.46492 * 109.47129 * 299.99974 * 12 2 1 14 14 C 1.34774 * 120.00344 * 180.02562 * 13 12 2 15 15 O 1.21284 * 119.99803 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00333 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.47162 * 179.97438 * 16 14 13 18 18 C 1.39863 * 125.90145 * 125.23311 * 17 16 14 19 19 C 1.35312 * 107.92527 * 180.14385 * 18 17 16 20 20 N 1.34953 * 107.74266 * 359.64076 * 19 18 17 21 21 C 1.46502 * 126.03718 * 180.24977 * 20 19 18 22 22 C 1.52998 * 109.47046 * 125.00175 * 21 20 19 23 23 F 1.39895 * 109.47137 * 59.99869 * 22 21 20 24 24 F 1.39900 * 109.46781 * 179.97438 * 22 21 20 25 25 F 1.39894 * 109.47097 * 299.99646 * 22 21 20 26 26 N 1.30837 * 125.89875 * 304.97647 * 17 16 14 27 27 H 1.09003 * 109.46633 * 299.99434 * 1 2 3 28 28 H 1.08995 * 109.47596 * 59.99683 * 1 2 3 29 29 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47442 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47602 * 300.00614 * 3 2 1 32 32 H 1.09003 * 109.46943 * 60.00756 * 3 2 1 33 33 H 0.96995 * 120.00045 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47112 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47061 * 59.99726 * 12 2 1 36 36 H 0.97003 * 120.00171 * 359.97438 * 13 12 2 37 37 H 1.09000 * 109.47182 * 60.00400 * 16 14 13 38 38 H 1.09002 * 109.47148 * 299.99929 * 16 14 13 39 39 H 1.08008 * 126.03762 * 0.02562 * 18 17 16 40 40 H 1.08002 * 126.13302 * 179.91107 * 19 18 17 41 41 H 1.08999 * 109.46642 * 245.00527 * 21 20 19 42 42 H 1.08997 * 109.47253 * 4.99559 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6990 -0.2391 -2.4828 7 7 0.9425 0.8298 -2.6034 8 14 2.3211 -1.1200 -4.0082 9 1 1.8255 -2.5199 -4.0080 10 1 1.8265 -0.4195 -5.2206 11 1 3.8061 -1.1205 -4.0085 12 6 2.0401 -0.7213 1.2491 13 7 1.5519 -0.0309 2.4453 14 6 1.8779 -0.4910 3.6694 15 8 2.5753 -1.4771 3.7806 16 6 1.3762 0.2196 4.8999 17 6 1.8785 -0.4910 6.1303 18 6 2.5998 0.0922 7.1771 19 6 2.8665 -0.8729 8.0874 20 7 2.3259 -2.0242 7.6365 21 6 2.3733 -3.3222 8.3143 22 6 0.9511 -3.8586 8.4887 23 9 0.3525 -4.0097 7.2333 24 9 0.9964 -5.0983 9.1354 25 9 0.2041 -2.9587 9.2563 26 7 1.7112 -1.7590 6.4060 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 0.7084 1.1615 -3.4843 34 1 3.1301 -0.7217 1.2488 35 1 1.6768 -1.7490 1.2491 36 1 0.9944 0.7580 2.3565 37 1 0.2862 0.2195 4.9005 38 1 1.7395 1.2473 4.8996 39 1 2.8938 1.1292 7.2458 40 1 3.4104 -0.7439 9.0115 41 1 2.9554 -4.0233 7.7162 42 1 2.8398 -3.2045 9.2923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899159589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:07 Heat of formation + Delta-G solvation = -115.255729 kcal Electronic energy + Delta-G solvation = -28580.563471 eV Core-core repulsion = 23954.566611 eV Total energy + Delta-G solvation = -4625.996859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.41975 -48.00378 -47.81074 -41.42072 -39.08725 -36.34028 -34.57793 -33.21069 -31.47793 -30.69295 -29.86710 -27.77377 -25.69379 -25.51332 -24.74687 -23.66366 -21.51395 -20.81515 -19.54697 -18.97929 -18.80847 -18.69410 -18.16001 -16.90262 -16.69949 -15.71769 -15.44178 -15.06892 -14.94769 -14.80401 -14.69878 -14.56314 -14.33117 -14.06832 -13.97498 -13.95732 -13.85740 -13.35579 -13.14849 -12.89988 -12.78926 -12.59122 -12.32781 -12.13373 -11.91818 -11.31386 -11.15989 -10.81731 -10.71250 -10.65917 -10.34841 -10.18090 -9.59849 -9.56855 -9.43719 -9.15506 -8.82072 -8.75594 -8.40808 -8.24818 -5.99749 -4.09660 1.54702 1.89663 2.36532 2.63311 3.15247 3.30084 3.31813 3.35879 3.39619 3.49674 3.77971 3.86648 4.26992 4.42329 4.48051 4.55058 4.59867 5.05620 5.26900 5.30979 5.42170 5.51324 5.60391 5.83180 6.27378 6.37990 6.42211 6.54961 6.64394 6.83278 6.85843 6.97632 7.05691 7.09811 7.39306 7.55046 7.58921 7.71927 8.04325 8.11003 8.20199 8.41793 8.79321 8.91323 9.55968 11.01613 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002289 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.609549 B =12229.407176 C =12839.062432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.134 3.866 13 N -0.718 5.718 14 C 0.506 3.494 15 O -0.537 6.537 16 C -0.065 4.065 17 C 0.100 3.900 18 C -0.253 4.253 19 C 0.055 3.945 20 N -0.392 5.392 21 C 0.100 3.900 22 C 0.444 3.556 23 F -0.160 7.160 24 F -0.179 7.179 25 F -0.180 7.180 26 N -0.246 5.246 27 H 0.007 0.993 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.397 0.603 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.176 0.824 41 H 0.129 0.871 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -1.445 25.147 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.370 5.370 14 C 0.290 3.710 15 O -0.414 6.414 16 C -0.107 4.107 17 C -0.070 4.070 18 C -0.282 4.282 19 C -0.088 4.088 20 N -0.175 5.175 21 C -0.025 4.025 22 C 0.388 3.612 23 F -0.141 7.141 24 F -0.161 7.161 25 F -0.162 7.162 26 N -0.065 5.065 27 H 0.026 0.974 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.232 0.768 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.171 0.829 40 H 0.193 0.807 41 H 0.147 0.853 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.259 -3.297 24.756 25.007 hybrid contribution 0.264 0.529 -0.498 0.773 sum 1.524 -2.768 24.259 24.464 Atomic orbital electron populations 1.21830 0.97763 0.99194 1.00080 1.18344 0.92789 0.92733 0.90561 1.21831 0.98556 0.98372 1.00093 1.20966 1.31478 1.12093 0.89965 0.92541 1.24873 0.94865 0.94926 0.98805 1.69789 1.36646 1.22773 1.23300 0.86643 0.79219 0.79831 0.82220 1.20283 1.21333 1.20309 1.21675 0.97998 0.95778 0.83408 1.46259 1.52926 1.31909 1.05886 1.20211 0.81248 0.84998 0.84514 1.90706 1.37938 1.26072 1.86724 1.20126 1.02783 0.99416 0.88326 1.21727 0.97986 0.91335 0.95919 1.21419 1.09562 1.00921 0.96330 1.22493 1.00328 0.85273 1.00678 1.48151 1.45471 1.06792 1.17086 1.22679 0.92743 0.85534 1.01501 1.20633 0.89903 0.75835 0.74800 1.93319 1.85417 1.95306 1.40100 1.93214 1.96772 1.44059 1.82027 1.93211 1.79356 1.67605 1.75989 1.77692 1.17889 1.16183 0.94773 0.97417 0.89631 0.95469 0.95482 0.89641 0.97401 0.92970 0.92890 0.92852 0.76752 0.87297 0.86977 0.82937 0.80657 0.85279 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.40 8.01 -34.43 -0.28 -13.67 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.13 2.88 4.50 -4.05 -0.02 2.87 16 13 N -0.72 -12.69 4.96 -60.30 -0.30 -12.99 16 14 C 0.51 8.81 7.82 -10.99 -0.09 8.72 16 15 O -0.54 -11.63 15.56 5.55 0.09 -11.55 16 16 C -0.06 -0.81 6.28 -29.03 -0.18 -0.99 16 17 C 0.10 1.37 6.01 -82.41 -0.50 0.87 16 18 C -0.25 -2.66 10.72 -40.02 -0.43 -3.09 16 19 C 0.05 0.49 11.45 -17.22 -0.20 0.29 16 20 N -0.39 -4.35 3.60 -61.37 -0.22 -4.57 16 21 C 0.10 0.73 6.51 -4.04 -0.03 0.70 16 22 C 0.44 4.25 3.28 37.16 0.12 4.37 16 23 F -0.16 -2.13 16.28 2.25 0.04 -2.10 16 24 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 25 F -0.18 -1.89 17.24 2.25 0.04 -1.85 16 26 N -0.25 -3.77 10.86 33.67 0.37 -3.41 16 27 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 32 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 6.16 6.16 -40.82 -0.25 5.90 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.11 1.03 8.12 -51.93 -0.42 0.61 16 39 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.14 0.37 8.07 -51.93 -0.42 -0.05 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -33.77 361.65 -5.52 -39.29 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.36 Total: 2.88 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.16 Total: -2.32 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.36 Total: -44.14 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.77 -5.52 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899159589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.963 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds