Wall clock time and date at job start Tue Mar 31 2020 17:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 C 1.50707 * 109.46905 * 240.00505 * 2 1 3 5 5 H 1.07991 * 120.00046 * 239.99526 * 4 2 1 6 6 C 1.37883 * 119.99540 * 59.99602 * 4 2 1 7 7 N 1.31512 * 120.00422 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99536 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47014 * 59.99980 * 8 6 4 10 10 H 1.48501 * 109.46936 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47030 * 299.99863 * 8 6 4 12 12 C 1.52998 * 109.47603 * 120.00470 * 2 1 3 13 13 N 1.46492 * 109.47129 * 299.99974 * 12 2 1 14 14 C 1.34774 * 120.00344 * 180.02562 * 13 12 2 15 15 O 1.21284 * 119.99803 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00333 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.47162 * 179.97438 * 16 14 13 18 18 C 1.39863 * 125.90145 * 125.23311 * 17 16 14 19 19 C 1.35312 * 107.92527 * 180.14385 * 18 17 16 20 20 N 1.34953 * 107.74266 * 359.64076 * 19 18 17 21 21 C 1.46502 * 126.03718 * 180.24977 * 20 19 18 22 22 C 1.52998 * 109.47046 * 125.00175 * 21 20 19 23 23 F 1.39895 * 109.47137 * 59.99869 * 22 21 20 24 24 F 1.39900 * 109.46781 * 179.97438 * 22 21 20 25 25 F 1.39894 * 109.47097 * 299.99646 * 22 21 20 26 26 N 1.30837 * 125.89875 * 304.97647 * 17 16 14 27 27 H 1.09003 * 109.46633 * 299.99434 * 1 2 3 28 28 H 1.08995 * 109.47596 * 59.99683 * 1 2 3 29 29 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47442 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47602 * 300.00614 * 3 2 1 32 32 H 1.09003 * 109.46943 * 60.00756 * 3 2 1 33 33 H 0.96995 * 120.00045 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47112 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47061 * 59.99726 * 12 2 1 36 36 H 0.97003 * 120.00171 * 359.97438 * 13 12 2 37 37 H 1.09000 * 109.47182 * 60.00400 * 16 14 13 38 38 H 1.09002 * 109.47148 * 299.99929 * 16 14 13 39 39 H 1.08008 * 126.03762 * 0.02562 * 18 17 16 40 40 H 1.08002 * 126.13302 * 179.91107 * 19 18 17 41 41 H 1.08999 * 109.46642 * 245.00527 * 21 20 19 42 42 H 1.08997 * 109.47253 * 4.99559 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6990 -0.2391 -2.4828 7 7 0.9425 0.8298 -2.6034 8 14 2.3211 -1.1200 -4.0082 9 1 1.8255 -2.5199 -4.0080 10 1 1.8265 -0.4195 -5.2206 11 1 3.8061 -1.1205 -4.0085 12 6 2.0401 -0.7213 1.2491 13 7 1.5519 -0.0309 2.4453 14 6 1.8779 -0.4910 3.6694 15 8 2.5753 -1.4771 3.7806 16 6 1.3762 0.2196 4.8999 17 6 1.8785 -0.4910 6.1303 18 6 2.5998 0.0922 7.1771 19 6 2.8665 -0.8729 8.0874 20 7 2.3259 -2.0242 7.6365 21 6 2.3733 -3.3222 8.3143 22 6 0.9511 -3.8586 8.4887 23 9 0.3525 -4.0097 7.2333 24 9 0.9964 -5.0983 9.1354 25 9 0.2041 -2.9587 9.2563 26 7 1.7112 -1.7590 6.4060 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 0.7084 1.1615 -3.4843 34 1 3.1301 -0.7217 1.2488 35 1 1.6768 -1.7490 1.2491 36 1 0.9944 0.7580 2.3565 37 1 0.2862 0.2195 4.9005 38 1 1.7395 1.2473 4.8996 39 1 2.8938 1.1292 7.2458 40 1 3.4104 -0.7439 9.0115 41 1 2.9554 -4.0233 7.7162 42 1 2.8398 -3.2045 9.2923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899159589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:07 Heat of formation + Delta-G solvation = -137.244902 kcal Electronic energy + Delta-G solvation = -28581.516993 eV Core-core repulsion = 23954.566611 eV Total energy + Delta-G solvation = -4626.950381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.19290 -48.74035 -48.66791 -42.20512 -40.53232 -38.09271 -35.35296 -34.93715 -32.90232 -31.94029 -30.73539 -28.70194 -27.53408 -27.38429 -26.42953 -24.46372 -22.26138 -22.00422 -20.70740 -20.46692 -19.72115 -19.57795 -18.88777 -18.30227 -17.62370 -17.46161 -16.71167 -16.43911 -16.35156 -15.89997 -15.57052 -15.52493 -15.11420 -14.98982 -14.87140 -14.83906 -14.80901 -14.77636 -14.57638 -14.25655 -13.96682 -13.81302 -13.40758 -13.23240 -13.09141 -13.05191 -12.86472 -12.62359 -12.61821 -12.22064 -12.12718 -11.49189 -11.45921 -11.24648 -10.82249 -10.67122 -10.38677 -10.27498 -9.87115 -9.55745 -8.01748 -6.17458 0.82085 1.25663 1.43531 1.44529 1.51317 1.66997 1.79024 1.81728 2.41724 2.59482 2.62124 2.88447 3.08205 3.21485 3.57707 3.82830 3.94500 4.04991 4.13298 4.33216 4.48618 4.52076 4.57818 4.74626 4.79553 4.87141 5.01976 5.09075 5.11285 5.15813 5.22449 5.40587 5.61326 5.65189 5.67812 5.69932 6.04738 6.18031 6.24049 6.45158 6.73850 6.76907 6.86649 7.43440 7.50033 8.96862 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002289 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.609549 B =12229.407176 C =12839.062432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.121 4.121 4 C -0.532 4.532 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.711 5.711 14 C 0.504 3.496 15 O -0.584 6.584 16 C -0.055 4.055 17 C 0.074 3.926 18 C -0.270 4.270 19 C 0.069 3.931 20 N -0.397 5.397 21 C 0.098 3.902 22 C 0.441 3.559 23 F -0.189 7.189 24 F -0.175 7.175 25 F -0.187 7.187 26 N -0.309 5.309 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.013 0.987 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.411 0.589 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.178 0.822 40 H 0.226 0.774 41 H 0.135 0.865 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -0.200 27.478 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.571 4.571 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.027 3.973 13 N -0.364 5.364 14 C 0.291 3.709 15 O -0.464 6.464 16 C -0.096 4.096 17 C -0.094 4.094 18 C -0.298 4.298 19 C -0.073 4.073 20 N -0.181 5.181 21 C -0.025 4.025 22 C 0.385 3.615 23 F -0.170 7.170 24 F -0.157 7.157 25 F -0.168 7.168 26 N -0.130 5.130 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.248 0.752 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.195 0.805 40 H 0.243 0.757 41 H 0.153 0.847 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.819 -2.026 27.096 27.233 hybrid contribution 0.089 0.081 -1.130 1.137 sum 1.908 -1.945 25.966 26.109 Atomic orbital electron populations 1.21681 0.97177 0.98483 1.00587 1.18336 0.93179 0.93181 0.90106 1.21670 0.97912 0.97620 1.00644 1.21274 1.31819 1.12184 0.91823 0.94067 1.25432 0.95135 0.95603 1.00866 1.69890 1.36854 1.23227 1.23683 0.85851 0.78656 0.78789 0.79707 1.20455 1.20612 1.20240 1.21175 0.96743 0.94770 0.84589 1.46074 1.53113 1.32107 1.05077 1.21102 0.80009 0.84364 0.85417 1.90684 1.40023 1.28262 1.87387 1.20188 1.03758 1.00401 0.85261 1.22071 0.98853 0.91525 0.96943 1.21809 1.09585 1.02602 0.95852 1.23320 0.98633 0.83830 1.01566 1.48390 1.45047 1.08478 1.16192 1.23080 0.91063 0.84419 1.03919 1.21025 0.90843 0.75948 0.73638 1.93261 1.86145 1.95482 1.42127 1.93217 1.96780 1.43888 1.81782 1.93191 1.79809 1.67824 1.75989 1.77585 1.20365 1.17537 0.97465 0.94071 0.91822 0.96745 0.96341 0.91920 0.93888 0.92971 0.94675 0.95257 0.75174 0.85553 0.83147 0.80451 0.75728 0.84735 0.79202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 2 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.77 8.01 25.60 0.21 -28.56 16 5 H 0.04 2.29 7.74 -2.92 -0.02 2.26 16 6 C 0.03 1.58 5.15 84.66 0.44 2.01 16 7 N -0.90 -48.21 9.35 21.45 0.20 -48.00 16 8 Si 0.94 43.19 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.15 6.63 4.50 86.38 0.39 7.02 16 13 N -0.71 -24.49 4.96 -463.08 -2.30 -26.79 16 14 C 0.50 17.26 7.82 87.66 0.69 17.94 16 15 O -0.58 -25.76 15.56 -3.04 -0.05 -25.81 16 16 C -0.06 -1.26 6.28 29.10 0.18 -1.08 16 17 C 0.07 1.93 6.01 43.10 0.26 2.19 16 18 C -0.27 -4.89 10.72 21.99 0.24 -4.65 16 19 C 0.07 0.98 11.45 83.54 0.96 1.94 16 20 N -0.40 -8.02 3.60 -348.06 -1.25 -9.27 16 21 C 0.10 1.21 6.51 86.38 0.56 1.77 16 22 C 0.44 8.05 3.28 71.98 0.24 8.28 16 23 F -0.19 -5.16 16.28 44.97 0.73 -4.43 16 24 F -0.18 -2.87 17.32 44.97 0.78 -2.10 16 25 F -0.19 -3.71 17.24 44.97 0.78 -2.94 16 26 N -0.31 -9.33 10.86 -47.39 -0.51 -9.84 16 27 H 0.04 1.52 6.86 -2.39 -0.02 1.51 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 32 H 0.04 1.54 6.86 -2.39 -0.02 1.53 16 33 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.41 11.77 6.16 -92.71 -0.57 11.20 16 37 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.15 2.22 8.12 -2.39 -0.02 2.20 16 39 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.23 0.66 8.06 -2.91 -0.02 0.63 16 41 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.19 0.18 8.07 -2.39 -0.02 0.16 16 Total: -1.00 -77.36 361.65 6.18 -71.19 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.49 Total: 13.11 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.28 Total: -0.33 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -3.86 Total: -93.91 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 9 Polarization: -11.75 SS G_CDS: 2.29 Total: -9.46 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -77.36 6.18 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899159589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.057 kcal (2) G-P(sol) polarization free energy of solvation -77.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds