Wall clock time and date at job start Tue Mar 31 2020 17:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 H 1.08998 * 109.72548 * 331.93320 * 3 2 1 5 5 C 1.51850 * 109.65756 * 211.24482 * 3 2 1 6 6 O 1.21285 * 120.35558 * 128.64381 * 5 3 2 7 7 N 1.34255 * 119.30244 * 308.69914 * 5 3 2 8 8 C 1.46698 * 120.36552 * 357.07365 * 7 5 3 9 9 C 1.53029 * 109.07492 * 288.70742 * 8 7 5 10 10 C 1.52449 * 110.17314 * 88.67868 * 9 8 7 11 11 N 1.46067 * 111.51697 * 297.33027 * 10 9 8 12 12 S 1.65600 * 119.81450 * 242.91914 * 11 10 9 13 13 O 1.42104 * 106.39989 * 336.45875 * 12 11 10 14 14 O 1.42099 * 106.39881 * 203.54115 * 12 11 10 15 15 N 1.65595 * 107.21913 * 90.00221 * 12 11 10 16 16 C 1.46499 * 119.99878 * 270.00150 * 15 12 11 17 17 C 1.53003 * 109.47198 * 264.99765 * 16 15 12 18 18 C 1.46498 * 120.00270 * 89.99766 * 15 12 11 19 19 C 1.50701 * 109.46831 * 94.99903 * 18 15 12 20 20 H 1.07999 * 120.00160 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99534 * 180.27342 * 19 18 15 22 22 N 1.31514 * 119.99571 * 179.72503 * 21 19 18 23 23 Si 1.86795 * 120.00232 * 359.72875 * 21 19 18 24 24 H 1.48500 * 109.47119 * 89.99686 * 23 21 19 25 25 H 1.48501 * 109.47253 * 209.99369 * 23 21 19 26 26 H 1.48497 * 109.47168 * 329.99947 * 23 21 19 27 27 H 1.08995 * 109.47440 * 299.99722 * 1 2 3 28 28 H 1.09002 * 109.47223 * 59.99941 * 1 2 3 29 29 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46989 * 240.00265 * 2 1 3 31 31 H 1.08996 * 109.46971 * 120.00438 * 2 1 3 32 32 H 0.97004 * 119.81372 * 177.05537 * 7 5 3 33 33 H 1.08998 * 109.53718 * 168.82340 * 8 7 5 34 34 H 1.09003 * 109.60428 * 48.62430 * 8 7 5 35 35 H 1.09005 * 109.34997 * 328.46492 * 9 8 7 36 36 H 1.08994 * 109.24116 * 208.82591 * 9 8 7 37 37 H 1.09006 * 109.06817 * 176.80930 * 10 9 8 38 38 H 1.08999 * 109.01532 * 57.82416 * 10 9 8 39 39 H 1.09009 * 109.47341 * 24.99606 * 16 15 12 40 40 H 1.08993 * 109.47471 * 144.99714 * 16 15 12 41 41 H 1.08998 * 109.47474 * 179.97438 * 17 16 15 42 42 H 1.08999 * 109.47273 * 300.00521 * 17 16 15 43 43 H 1.09005 * 109.46973 * 60.00001 * 17 16 15 44 44 H 1.08999 * 109.46858 * 335.00308 * 18 15 12 45 45 H 1.08999 * 109.47167 * 214.99877 * 18 15 12 46 46 H 0.96998 * 119.99914 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3091 2.0911 -0.4827 5 6 3.3630 1.5166 -0.7417 6 8 3.5251 2.3308 -1.6260 7 7 4.3510 0.6706 -0.4092 8 6 4.1778 -0.2719 0.7015 9 6 4.1960 0.5021 2.0216 10 6 2.7880 0.9639 2.3796 11 7 2.2568 1.8877 1.3806 12 16 1.8910 3.4444 1.8107 13 8 1.6613 3.4298 3.2130 14 8 0.9302 3.9052 0.8706 15 7 3.2543 4.3529 1.5695 16 6 4.2285 4.5134 2.6518 17 6 3.9400 5.8110 3.4095 18 6 3.4863 4.9961 0.2739 19 6 2.9837 6.4160 0.3208 20 1 2.5366 6.8010 1.2254 21 6 3.0900 7.2220 -0.7928 22 7 2.6465 8.4595 -0.7535 23 14 3.8639 6.5564 -2.3571 24 1 2.8122 5.9434 -3.2076 25 1 4.5152 7.6662 -3.0983 26 1 4.8794 5.5303 -2.0092 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.1838 0.6824 -0.9064 33 1 4.9906 -0.9981 0.6935 34 1 3.2248 -0.7903 0.5961 35 1 4.8467 1.3709 1.9219 36 1 4.5759 -0.1449 2.8121 37 1 2.8124 1.4627 3.3486 38 1 2.1344 0.0940 2.4435 39 1 4.1535 3.6685 3.3365 40 1 5.2339 4.5533 2.2328 41 1 4.6645 5.9302 4.2151 42 1 4.0149 6.6558 2.7249 43 1 2.9345 5.7711 3.8286 44 1 2.9548 4.4480 -0.5041 45 1 4.5539 4.9956 0.0540 46 1 2.7209 9.0265 -1.5370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922015185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:43 Heat of formation + Delta-G solvation = -87.471908 kcal Electronic energy + Delta-G solvation = -30428.190774 eV Core-core repulsion = 26480.699404 eV Total energy + Delta-G solvation = -3947.491371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.59599 -37.42656 -36.80607 -36.12036 -35.29890 -34.94232 -33.30056 -32.40769 -31.08594 -30.02202 -27.25850 -27.11457 -25.58690 -23.48194 -22.48788 -21.71060 -20.66466 -20.26062 -18.96506 -17.55201 -17.44306 -17.02506 -16.78376 -16.39312 -15.79838 -15.22226 -14.85320 -14.35215 -14.17583 -14.05040 -13.75783 -13.65150 -13.50883 -13.19845 -12.94408 -12.78694 -12.52689 -12.45863 -12.42270 -11.99471 -11.76620 -11.74390 -11.61925 -11.51293 -11.35621 -11.16978 -11.03248 -10.95075 -10.88432 -10.71428 -10.33462 -10.21977 -10.12494 -9.99801 -9.34463 -9.11191 -8.94245 -8.45669 -8.07723 -5.97052 -3.95400 0.98765 2.55569 3.22026 3.34364 3.44107 3.49678 3.57647 3.92486 4.30055 4.45933 4.52631 4.53767 4.56405 4.78767 4.86807 4.97922 5.04529 5.15103 5.27692 5.29738 5.37683 5.40428 5.46147 5.51614 5.57800 5.71899 5.75252 5.80592 5.85107 5.99535 6.01939 6.10201 6.13463 6.38918 6.50433 6.69893 6.78630 6.93514 7.06980 7.17065 7.22754 7.48541 7.71629 8.24766 8.59763 9.06738 9.63701 11.15715 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.006270 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.651285 B = 4464.883349 C = 5152.366260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.131 3.869 4 H 0.135 0.865 5 C 0.504 3.496 6 O -0.518 6.518 7 N -0.724 5.724 8 C 0.085 3.915 9 C -0.163 4.163 10 C 0.108 3.892 11 N -0.999 5.999 12 S 2.772 3.228 13 O -0.985 6.985 14 O -0.953 6.953 15 N -0.983 5.983 16 C 0.136 3.864 17 C -0.173 4.173 18 C 0.228 3.772 19 C -0.528 4.528 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.898 5.898 23 Si 0.871 3.129 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.263 1.263 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.398 0.602 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.029 0.971 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -23.231 6.003 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.021 3.979 4 H 0.153 0.847 5 C 0.287 3.713 6 O -0.392 6.392 7 N -0.379 5.379 8 C -0.039 4.039 9 C -0.203 4.203 10 C -0.017 4.017 11 N -0.837 5.837 12 S 2.782 3.218 13 O -0.969 6.969 14 O -0.937 6.937 15 N -0.825 5.825 16 C 0.010 3.990 17 C -0.232 4.232 18 C 0.105 3.895 19 C -0.567 4.567 20 H 0.098 0.902 21 C -0.128 4.128 22 N -0.536 5.536 23 Si 0.697 3.303 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.187 1.187 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.799 -22.315 5.837 23.235 hybrid contribution 1.256 -0.306 -1.161 1.738 sum 4.056 -22.621 4.676 23.453 Atomic orbital electron populations 1.21852 0.94403 1.01978 1.03052 1.22214 0.97484 0.94439 1.03462 1.21637 0.94663 0.99398 0.82213 0.84748 1.21381 0.86553 0.80072 0.83247 1.90850 1.81735 1.35236 1.31330 1.45934 1.18049 1.38571 1.35308 1.22212 1.04376 0.91596 0.85676 1.22406 0.98125 1.01760 0.97993 1.21191 0.94101 0.94907 0.91523 1.58430 1.79946 1.30372 1.14968 1.02383 0.74112 0.72109 0.73223 1.93540 1.84958 1.86650 1.31787 1.93634 1.57907 1.78503 1.63632 1.57586 1.40295 1.62990 1.21605 1.20975 0.92739 0.97545 0.87717 1.22261 1.01137 0.99683 1.00087 1.19496 0.97270 0.94127 0.78603 1.21406 1.40105 0.94646 1.00505 0.90181 1.24828 0.94929 0.94706 0.98326 1.69903 1.46747 1.06932 1.30053 0.86927 0.80584 0.78545 0.84197 1.19723 1.21431 1.18749 0.92115 0.91891 0.92171 0.90462 0.88768 0.76599 0.89861 0.88467 0.90338 0.89478 0.88429 0.90523 0.92278 0.91278 0.93082 0.89770 0.92764 0.94305 0.95351 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.73 37.16 0.36 -1.08 16 2 C -0.14 -1.27 3.93 -26.73 -0.11 -1.37 16 3 C 0.13 1.83 2.65 -68.42 -0.18 1.65 16 4 H 0.13 2.26 6.52 -51.93 -0.34 1.92 16 5 C 0.50 7.65 6.88 -10.65 -0.07 7.58 16 6 O -0.52 -10.58 16.89 5.55 0.09 -10.49 16 7 N -0.72 -7.61 5.29 -59.85 -0.32 -7.93 16 8 C 0.09 0.57 6.33 -3.92 -0.02 0.54 16 9 C -0.16 -1.21 5.92 -27.00 -0.16 -1.37 16 10 C 0.11 1.05 5.58 -4.56 -0.03 1.03 16 11 N -1.00 -14.17 2.94 -108.43 -0.32 -14.48 16 12 S 2.77 54.83 6.00 -107.50 -0.65 54.18 16 13 O -0.99 -19.74 15.61 -57.17 -0.89 -20.64 16 14 O -0.95 -22.91 15.62 -57.17 -0.89 -23.80 16 15 N -0.98 -20.51 2.85 -115.66 -0.33 -20.84 16 16 C 0.14 2.37 6.09 -4.04 -0.02 2.35 16 17 C -0.17 -3.18 9.83 37.16 0.37 -2.82 16 18 C 0.23 5.72 4.19 -5.19 -0.02 5.70 16 19 C -0.53 -15.52 8.97 -34.44 -0.31 -15.82 16 20 H 0.08 2.53 7.13 -52.49 -0.37 2.15 16 21 C 0.07 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 23 Si 0.87 23.13 27.46 -169.99 -4.67 18.46 16 24 H -0.27 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.26 -6.76 6.55 56.52 0.37 -6.39 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.63 7.71 -51.93 -0.40 0.23 16 31 H 0.09 0.64 3.42 -51.93 -0.18 0.47 16 32 H 0.40 3.85 8.93 -40.82 -0.36 3.48 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.55 3.66 -51.93 -0.19 0.36 16 35 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 1.01 6.80 -51.93 -0.35 0.66 16 38 H 0.08 0.55 6.33 -51.93 -0.33 0.22 16 39 H 0.06 0.85 7.61 -51.92 -0.40 0.45 16 40 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.81 6.59 -51.93 -0.34 1.47 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.04 1.03 5.94 -51.93 -0.31 0.72 16 45 H 0.03 0.71 7.07 -51.93 -0.37 0.34 16 46 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -38.40 361.96 -8.93 -47.34 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.90 Total: 1.90 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.30 Total: -1.45 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -0.19 Total: -70.97 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -1.69 Total: -54.92 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.67 Total: 18.46 kcal Atomic # 16 Polarization: 54.83 SS G_CDS: -0.65 Total: 54.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.40 -8.93 -47.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922015185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.133 kcal (2) G-P(sol) polarization free energy of solvation -38.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds