Wall clock time and date at job start Tue Mar 31 2020 17:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 H 1.08998 * 109.72548 * 331.93320 * 3 2 1 5 5 C 1.51850 * 109.65756 * 211.24482 * 3 2 1 6 6 O 1.21285 * 120.35558 * 128.64381 * 5 3 2 7 7 N 1.34255 * 119.30244 * 308.69914 * 5 3 2 8 8 C 1.46698 * 120.36552 * 357.07365 * 7 5 3 9 9 C 1.53029 * 109.07492 * 288.70742 * 8 7 5 10 10 C 1.52449 * 110.17314 * 88.67868 * 9 8 7 11 11 N 1.46067 * 111.51697 * 297.33027 * 10 9 8 12 12 S 1.65600 * 119.81450 * 242.91914 * 11 10 9 13 13 O 1.42104 * 106.39989 * 336.45875 * 12 11 10 14 14 O 1.42099 * 106.39881 * 203.54115 * 12 11 10 15 15 N 1.65595 * 107.21913 * 90.00221 * 12 11 10 16 16 C 1.46499 * 119.99878 * 270.00150 * 15 12 11 17 17 C 1.53003 * 109.47198 * 264.99765 * 16 15 12 18 18 C 1.46498 * 120.00270 * 89.99766 * 15 12 11 19 19 C 1.50701 * 109.46831 * 94.99903 * 18 15 12 20 20 H 1.07999 * 120.00160 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99534 * 180.27342 * 19 18 15 22 22 N 1.31514 * 119.99571 * 179.72503 * 21 19 18 23 23 Si 1.86795 * 120.00232 * 359.72875 * 21 19 18 24 24 H 1.48500 * 109.47119 * 89.99686 * 23 21 19 25 25 H 1.48501 * 109.47253 * 209.99369 * 23 21 19 26 26 H 1.48497 * 109.47168 * 329.99947 * 23 21 19 27 27 H 1.08995 * 109.47440 * 299.99722 * 1 2 3 28 28 H 1.09002 * 109.47223 * 59.99941 * 1 2 3 29 29 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46989 * 240.00265 * 2 1 3 31 31 H 1.08996 * 109.46971 * 120.00438 * 2 1 3 32 32 H 0.97004 * 119.81372 * 177.05537 * 7 5 3 33 33 H 1.08998 * 109.53718 * 168.82340 * 8 7 5 34 34 H 1.09003 * 109.60428 * 48.62430 * 8 7 5 35 35 H 1.09005 * 109.34997 * 328.46492 * 9 8 7 36 36 H 1.08994 * 109.24116 * 208.82591 * 9 8 7 37 37 H 1.09006 * 109.06817 * 176.80930 * 10 9 8 38 38 H 1.08999 * 109.01532 * 57.82416 * 10 9 8 39 39 H 1.09009 * 109.47341 * 24.99606 * 16 15 12 40 40 H 1.08993 * 109.47471 * 144.99714 * 16 15 12 41 41 H 1.08998 * 109.47474 * 179.97438 * 17 16 15 42 42 H 1.08999 * 109.47273 * 300.00521 * 17 16 15 43 43 H 1.09005 * 109.46973 * 60.00001 * 17 16 15 44 44 H 1.08999 * 109.46858 * 335.00308 * 18 15 12 45 45 H 1.08999 * 109.47167 * 214.99877 * 18 15 12 46 46 H 0.96998 * 119.99914 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3091 2.0911 -0.4827 5 6 3.3630 1.5166 -0.7417 6 8 3.5251 2.3308 -1.6260 7 7 4.3510 0.6706 -0.4092 8 6 4.1778 -0.2719 0.7015 9 6 4.1960 0.5021 2.0216 10 6 2.7880 0.9639 2.3796 11 7 2.2568 1.8877 1.3806 12 16 1.8910 3.4444 1.8107 13 8 1.6613 3.4298 3.2130 14 8 0.9302 3.9052 0.8706 15 7 3.2543 4.3529 1.5695 16 6 4.2285 4.5134 2.6518 17 6 3.9400 5.8110 3.4095 18 6 3.4863 4.9961 0.2739 19 6 2.9837 6.4160 0.3208 20 1 2.5366 6.8010 1.2254 21 6 3.0900 7.2220 -0.7928 22 7 2.6465 8.4595 -0.7535 23 14 3.8639 6.5564 -2.3571 24 1 2.8122 5.9434 -3.2076 25 1 4.5152 7.6662 -3.0983 26 1 4.8794 5.5303 -2.0092 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.1838 0.6824 -0.9064 33 1 4.9906 -0.9981 0.6935 34 1 3.2248 -0.7903 0.5961 35 1 4.8467 1.3709 1.9219 36 1 4.5759 -0.1449 2.8121 37 1 2.8124 1.4627 3.3486 38 1 2.1344 0.0940 2.4435 39 1 4.1535 3.6685 3.3365 40 1 5.2339 4.5533 2.2328 41 1 4.6645 5.9302 4.2151 42 1 4.0149 6.6558 2.7249 43 1 2.9345 5.7711 3.8286 44 1 2.9548 4.4480 -0.5041 45 1 4.5539 4.9956 0.0540 46 1 2.7209 9.0265 -1.5370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922015185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:42 Heat of formation + Delta-G solvation = -120.163107 kcal Electronic energy + Delta-G solvation = -30429.608371 eV Core-core repulsion = 26480.699404 eV Total energy + Delta-G solvation = -3948.908968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58548 -38.62824 -38.35300 -37.82360 -36.95471 -35.85486 -34.66063 -34.15715 -31.97509 -31.75666 -29.15400 -28.10760 -26.43955 -24.38104 -24.22958 -23.43609 -21.47865 -21.34279 -20.14271 -19.15721 -19.02528 -18.57110 -18.09378 -17.77968 -17.13681 -16.59187 -16.23153 -15.75784 -15.45887 -15.11766 -14.97055 -14.77350 -14.66124 -14.62458 -14.44823 -14.32227 -13.85936 -13.75680 -13.51019 -13.31374 -13.27416 -13.18423 -13.10897 -12.92539 -12.79569 -12.76007 -12.47494 -12.25181 -12.07556 -12.06586 -11.88181 -11.74872 -11.55733 -11.51349 -11.03412 -10.80713 -10.06477 -9.97856 -9.82975 -8.32995 -6.34910 -0.52668 1.26895 1.34016 1.39197 1.43562 1.98567 2.29634 2.32459 2.47441 3.00777 3.21181 3.38504 3.61362 3.82072 3.87780 3.93081 4.04284 4.18384 4.32705 4.37619 4.44803 4.51100 4.57178 4.61143 4.63732 4.80765 4.83336 4.84621 4.90087 4.94663 4.99600 5.01436 5.07639 5.11114 5.33092 5.36332 5.43175 5.47122 5.49355 5.57181 5.82930 5.96976 6.23309 6.28334 6.67416 7.22540 7.27108 8.83740 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.006270 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.651285 B = 4464.883349 C = 5152.366260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.127 4.127 3 C 0.126 3.874 4 H 0.094 0.906 5 C 0.499 3.501 6 O -0.584 6.584 7 N -0.707 5.707 8 C 0.078 3.922 9 C -0.159 4.159 10 C 0.091 3.909 11 N -0.985 5.985 12 S 2.780 3.220 13 O -0.992 6.992 14 O -1.008 7.008 15 N -0.993 5.993 16 C 0.128 3.872 17 C -0.171 4.171 18 C 0.247 3.753 19 C -0.530 4.530 20 H 0.043 0.957 21 C 0.017 3.983 22 N -0.942 5.942 23 Si 0.932 3.068 24 H -0.281 1.281 25 H -0.272 1.272 26 H -0.248 1.248 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.404 0.596 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.025 0.975 45 H 0.036 0.964 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -27.944 7.094 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C 0.016 3.984 4 H 0.112 0.888 5 C 0.283 3.717 6 O -0.463 6.463 7 N -0.359 5.359 8 C -0.044 4.044 9 C -0.199 4.199 10 C -0.033 4.033 11 N -0.827 5.827 12 S 2.790 3.210 13 O -0.976 6.976 14 O -0.992 6.992 15 N -0.833 5.833 16 C 0.003 3.997 17 C -0.230 4.230 18 C 0.122 3.878 19 C -0.569 4.569 20 H 0.061 0.939 21 C -0.181 4.181 22 N -0.582 5.582 23 Si 0.756 3.244 24 H -0.207 1.207 25 H -0.197 1.197 26 H -0.171 1.171 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.147 0.853 32 H 0.241 0.759 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.032 -27.073 7.008 28.414 hybrid contribution 0.532 1.058 -1.336 1.785 sum 5.565 -26.015 5.672 27.201 Atomic orbital electron populations 1.21896 0.94658 1.03486 1.01597 1.22289 0.97191 0.91130 1.05914 1.21686 0.93794 1.01655 0.81262 0.88775 1.21569 0.87559 0.80001 0.82551 1.90811 1.82863 1.38256 1.34334 1.45964 1.16869 1.37485 1.35564 1.22615 1.07002 0.91153 0.83614 1.22437 0.95804 1.01909 0.99714 1.21744 0.96552 0.95033 0.89936 1.57934 1.80089 1.28587 1.16098 1.01839 0.73474 0.73202 0.72436 1.93517 1.85008 1.87257 1.31818 1.93562 1.60204 1.80398 1.65056 1.57554 1.41119 1.63763 1.20863 1.21295 0.92782 0.98242 0.87376 1.22223 1.01280 0.98962 1.00500 1.19010 0.96793 0.91438 0.80539 1.21716 1.39174 0.96941 0.99072 0.93899 1.25664 0.95750 0.94955 1.01712 1.70030 1.48613 1.08329 1.31267 0.85949 0.79852 0.78521 0.80057 1.20662 1.19694 1.17147 0.93415 0.93755 0.89023 0.88671 0.85328 0.75926 0.85788 0.86935 0.92225 0.85182 0.88779 0.86783 0.88404 0.89514 0.89115 0.93836 0.94676 0.95725 0.94643 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.73 71.98 0.70 -1.96 16 2 C -0.13 -1.94 3.93 30.60 0.12 -1.82 16 3 C 0.13 3.45 2.65 44.58 0.12 3.56 16 4 H 0.09 3.37 6.52 -2.39 -0.02 3.36 16 5 C 0.50 14.68 6.88 88.11 0.61 15.28 16 6 O -0.58 -24.32 16.89 -3.04 -0.05 -24.37 16 7 N -0.71 -12.56 5.29 -461.94 -2.44 -15.00 16 8 C 0.08 0.59 6.33 86.35 0.55 1.13 16 9 C -0.16 -1.49 5.92 30.42 0.18 -1.31 16 10 C 0.09 1.39 5.58 86.28 0.48 1.87 16 11 N -0.99 -26.56 2.94 -496.98 -1.46 -28.02 16 12 S 2.78 112.07 6.00 -56.49 -0.34 111.73 16 13 O -0.99 -39.62 15.61 -128.00 -2.00 -41.61 16 14 O -1.01 -51.52 15.62 -128.00 -2.00 -53.52 16 15 N -0.99 -42.07 2.85 -519.85 -1.48 -43.56 16 16 C 0.13 4.31 6.09 86.38 0.53 4.83 16 17 C -0.17 -6.35 9.83 71.98 0.71 -5.64 16 18 C 0.25 12.76 4.19 85.63 0.36 13.12 16 19 C -0.53 -32.75 8.97 25.60 0.23 -32.52 16 20 H 0.04 2.90 7.13 -2.91 -0.02 2.88 16 21 C 0.02 1.10 5.47 84.66 0.46 1.56 16 22 N -0.94 -62.35 13.96 21.45 0.30 -62.05 16 23 Si 0.93 49.26 27.46 68.60 1.88 51.14 16 24 H -0.28 -15.16 7.11 99.48 0.71 -14.45 16 25 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.25 -12.38 6.55 99.48 0.65 -11.73 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.18 7.71 -2.39 -0.02 1.17 16 31 H 0.13 1.03 3.42 -2.39 -0.01 1.02 16 32 H 0.40 6.57 8.93 -92.71 -0.83 5.74 16 33 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.11 0.54 3.66 -2.39 -0.01 0.54 16 35 H 0.06 0.86 8.04 -2.38 -0.02 0.84 16 36 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.09 1.59 6.80 -2.38 -0.02 1.57 16 38 H 0.11 0.96 6.33 -2.39 -0.02 0.94 16 39 H 0.10 2.54 7.61 -2.38 -0.02 2.52 16 40 H 0.09 2.62 8.00 -2.39 -0.02 2.60 16 41 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.04 1.95 6.59 -2.39 -0.02 1.94 16 43 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 44 H 0.02 1.37 5.94 -2.39 -0.01 1.35 16 45 H 0.04 1.78 7.07 -2.39 -0.02 1.76 16 46 H 0.27 16.48 8.31 -92.71 -0.77 15.71 16 Total: -1.00 -92.81 361.96 -2.43 -95.25 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.13 Total: 11.89 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.04 Total: -1.88 kcal Atomic # 7 Polarization: -143.54 SS G_CDS: -5.09 Total: -148.63 kcal Atomic # 8 Polarization: -115.45 SS G_CDS: -4.05 Total: -119.50 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.88 Total: 51.14 kcal Atomic # 16 Polarization: 112.07 SS G_CDS: -0.34 Total: 111.73 kcal Total: -92.81 -2.43 -95.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922015185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.917 kcal (2) G-P(sol) polarization free energy of solvation -92.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds