Wall clock time and date at job start Tue Mar 31 2020 17:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 H 1.08992 * 109.72664 * 331.68479 * 3 2 1 5 5 C 1.51340 * 109.59570 * 211.28598 * 3 2 1 6 6 O 1.21284 * 120.34386 * 128.51125 * 5 3 2 7 7 N 1.34242 * 119.30288 * 308.23581 * 5 3 2 8 8 C 1.46705 * 120.37260 * 357.41081 * 7 5 3 9 9 C 1.53029 * 109.07087 * 288.71622 * 8 7 5 10 10 C 1.52453 * 110.17045 * 88.67347 * 9 8 7 11 11 N 1.46067 * 111.51703 * 297.33614 * 10 9 8 12 12 S 1.65599 * 119.80846 * 242.96998 * 11 10 9 13 13 O 1.42105 * 106.39867 * 203.54015 * 12 11 10 14 14 O 1.42103 * 106.40520 * 336.45549 * 12 11 10 15 15 N 1.65597 * 107.21908 * 90.00303 * 12 11 10 16 16 C 1.46509 * 119.99495 * 269.99653 * 15 12 11 17 17 C 1.46490 * 120.00418 * 89.99723 * 15 12 11 18 18 H 1.08996 * 109.47236 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47274 * 239.99799 * 17 15 12 20 20 C 1.50704 * 109.47199 * 120.00209 * 17 15 12 21 21 H 1.08000 * 119.99883 * 359.97438 * 20 17 15 22 22 C 1.37882 * 119.99946 * 180.02562 * 20 17 15 23 23 N 1.31518 * 119.99776 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 119.99868 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47399 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.46744 * 119.99955 * 24 22 20 27 27 H 1.48503 * 109.47154 * 239.99527 * 24 22 20 28 28 H 1.09006 * 109.47381 * 299.99871 * 1 2 3 29 29 H 1.09000 * 109.47669 * 59.99751 * 1 2 3 30 30 H 1.09003 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46731 * 239.99935 * 2 1 3 32 32 H 1.08999 * 109.46928 * 120.00276 * 2 1 3 33 33 H 0.96994 * 119.81738 * 177.38531 * 7 5 3 34 34 H 1.09005 * 109.53549 * 48.59647 * 8 7 5 35 35 H 1.09002 * 109.53783 * 168.75810 * 8 7 5 36 36 H 1.09002 * 109.35774 * 208.88889 * 9 8 7 37 37 H 1.08998 * 109.35974 * 328.60252 * 9 8 7 38 38 H 1.09001 * 109.07435 * 57.86387 * 10 9 8 39 39 H 1.09004 * 109.07089 * 176.80978 * 10 9 8 40 40 H 1.08999 * 109.46998 * 89.99868 * 16 15 12 41 41 H 1.09005 * 109.47028 * 210.00176 * 16 15 12 42 42 H 1.09001 * 109.46919 * 329.99826 * 16 15 12 43 43 H 1.09004 * 109.47114 * 300.00269 * 19 17 15 44 44 H 1.09005 * 109.47226 * 59.99984 * 19 17 15 45 45 H 1.09000 * 109.47614 * 180.02562 * 19 17 15 46 46 H 0.97000 * 119.99571 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3110 2.0904 -0.4866 5 6 3.3579 1.5150 -0.7404 6 8 3.5190 2.3272 -1.6266 7 7 4.3485 0.6745 -0.4022 8 6 4.1762 -0.2655 0.7108 9 6 4.1865 0.5125 2.0285 10 6 2.7751 0.9689 2.3806 11 7 2.2429 1.8870 1.3769 12 16 1.8697 3.4437 1.8008 13 8 0.9096 3.8974 0.8565 14 8 1.6362 3.4330 3.2025 15 7 3.2300 4.3569 1.5602 16 6 4.2006 4.5250 2.6447 17 6 3.4629 4.9966 0.2631 18 1 2.6404 4.7596 -0.4118 19 6 4.7747 4.4808 -0.3318 20 6 3.5478 6.4899 0.4474 21 1 3.4388 6.9194 1.4323 22 6 3.7637 7.3078 -0.6414 23 7 3.8960 6.7846 -1.8408 24 14 3.8682 9.1588 -0.4130 25 1 3.6887 9.4913 1.0231 26 1 5.1971 9.6395 -0.8696 27 1 2.8028 9.8170 -1.2111 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.1828 0.6885 -0.8968 34 1 3.2254 -0.7877 0.6031 35 1 4.9917 -0.9887 0.7068 36 1 4.5677 -0.1284 2.8236 37 1 4.8314 1.3854 1.9277 38 1 2.1246 0.0967 2.4459 39 1 2.7940 1.4707 3.3480 40 1 4.9454 3.7309 2.5920 41 1 4.6930 5.4924 2.5448 42 1 3.6854 4.4769 3.6040 43 1 5.5975 4.7174 0.3430 44 1 4.7134 3.4007 -0.4651 45 1 4.9483 4.9571 -1.2967 46 1 4.0482 7.3600 -2.6068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922016144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:46 Heat of formation + Delta-G solvation = -82.348049 kcal Electronic energy + Delta-G solvation = -30662.300740 eV Core-core repulsion = 26715.031556 eV Total energy + Delta-G solvation = -3947.269184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49596 -37.30523 -36.74736 -36.02231 -35.28633 -34.81526 -33.18186 -32.46652 -30.95723 -28.93828 -27.11194 -25.55422 -25.34518 -25.01655 -23.36918 -20.84413 -20.46201 -19.95723 -18.81192 -17.62608 -17.26911 -16.80305 -16.62220 -16.04506 -15.65999 -15.00280 -14.74779 -14.42842 -14.12693 -13.92490 -13.70006 -13.53801 -13.27974 -13.18951 -12.72806 -12.63550 -12.46446 -12.22228 -11.95625 -11.80966 -11.72597 -11.64485 -11.53693 -11.19100 -11.12438 -11.06100 -10.86757 -10.76990 -10.72253 -10.53456 -10.31483 -10.04036 -10.00725 -9.88611 -9.11344 -8.82440 -8.77789 -8.32550 -7.86048 -5.92524 -4.00903 1.08853 2.75083 3.34069 3.40207 3.41688 3.45106 3.49223 4.01723 4.43531 4.49046 4.59374 4.63600 4.68086 4.89209 4.96614 5.08635 5.17033 5.25800 5.36860 5.39050 5.48170 5.57627 5.61124 5.67112 5.73925 5.82052 5.84678 5.99922 6.04826 6.15485 6.21745 6.39163 6.61281 6.77555 6.96648 7.01170 7.14338 7.29489 7.37669 7.60690 7.78833 7.95336 8.26089 8.43230 8.49166 9.00782 9.63663 11.11622 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.005353 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.305320 B = 5229.560364 C = 5592.647493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.132 3.868 4 H 0.132 0.868 5 C 0.500 3.500 6 O -0.497 6.497 7 N -0.726 5.726 8 C 0.087 3.913 9 C -0.163 4.163 10 C 0.110 3.890 11 N -0.996 5.996 12 S 2.770 3.230 13 O -0.966 6.966 14 O -0.993 6.993 15 N -0.985 5.985 16 C 0.098 3.902 17 C 0.272 3.728 18 H 0.060 0.940 19 C -0.144 4.144 20 C -0.523 4.523 21 H 0.060 0.940 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.895 3.105 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.283 1.283 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.034 0.966 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.018 0.982 44 H 0.028 0.972 45 H 0.089 0.911 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -19.228 6.808 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.022 3.978 4 H 0.150 0.850 5 C 0.283 3.717 6 O -0.368 6.368 7 N -0.381 5.381 8 C -0.037 4.037 9 C -0.203 4.203 10 C -0.015 4.015 11 N -0.833 5.833 12 S 2.781 3.219 13 O -0.950 6.950 14 O -0.977 6.977 15 N -0.828 5.828 16 C -0.048 4.048 17 C 0.170 3.830 18 H 0.078 0.922 19 C -0.203 4.203 20 C -0.563 4.563 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.519 5.519 24 Si 0.723 3.277 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.209 1.209 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.107 0.893 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.354 -18.418 6.562 19.555 hybrid contribution 1.044 0.908 -0.184 1.396 sum 0.690 -17.509 6.378 18.648 Atomic orbital electron populations 1.21847 0.94617 1.01831 1.02916 1.22220 0.97286 0.94727 1.03396 1.21395 0.95068 0.99073 0.82308 0.85039 1.21126 0.86426 0.80273 0.83909 1.90913 1.81243 1.34027 1.30665 1.45915 1.17866 1.39109 1.35236 1.22164 1.04106 0.91662 0.85781 1.22404 0.98086 1.01786 0.97998 1.21154 0.94088 0.94868 0.91404 1.58193 1.79884 1.30541 1.14714 1.02309 0.74396 0.72310 0.72915 1.93600 1.58645 1.79130 1.63578 1.93514 1.85348 1.86690 1.32105 1.57724 1.39846 1.62919 1.22286 1.21280 0.92309 1.02702 0.88552 1.18727 0.95654 0.91792 0.76828 0.92247 1.22166 0.97448 0.98087 1.02642 1.21372 1.49920 0.90858 0.94175 0.92144 1.24919 0.95165 0.98661 0.95150 1.69942 1.48682 1.34750 0.98526 0.86506 0.77498 0.85546 0.78199 1.19829 1.21091 1.20943 0.92262 0.91941 0.92299 0.90524 0.88873 0.76664 0.88675 0.90068 0.89706 0.90247 0.90722 0.88609 0.94760 0.89795 0.92122 0.96305 0.95328 0.89290 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.73 37.16 0.36 -1.15 16 2 C -0.14 -1.37 3.92 -26.73 -0.10 -1.47 16 3 C 0.13 1.94 2.59 -68.98 -0.18 1.76 16 4 H 0.13 2.31 6.49 -51.93 -0.34 1.97 16 5 C 0.50 8.02 5.72 -10.91 -0.06 7.95 16 6 O -0.50 -10.58 15.33 5.55 0.09 -10.50 16 7 N -0.73 -8.44 5.29 -60.03 -0.32 -8.76 16 8 C 0.09 0.67 6.34 -3.91 -0.02 0.65 16 9 C -0.16 -1.40 5.92 -27.00 -0.16 -1.55 16 10 C 0.11 1.17 5.58 -4.56 -0.03 1.15 16 11 N -1.00 -14.78 2.94 -109.10 -0.32 -15.10 16 12 S 2.77 55.58 6.09 -107.50 -0.65 54.92 16 13 O -0.97 -23.05 15.20 -57.17 -0.87 -23.92 16 14 O -0.99 -20.17 15.24 -57.17 -0.87 -21.04 16 15 N -0.98 -21.29 3.12 -115.85 -0.36 -21.65 16 16 C 0.10 1.80 9.65 59.85 0.58 2.38 16 17 C 0.27 7.07 2.62 -69.09 -0.18 6.89 16 18 H 0.06 1.76 6.91 -51.93 -0.36 1.40 16 19 C -0.14 -3.57 8.39 37.16 0.31 -3.26 16 20 C -0.52 -14.80 7.99 -34.44 -0.28 -15.07 16 21 H 0.06 1.69 7.33 -52.49 -0.38 1.30 16 22 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 23 N -0.88 -26.09 11.32 55.43 0.63 -25.46 16 24 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 32 H 0.09 0.71 3.41 -51.93 -0.18 0.53 16 33 H 0.40 4.40 8.93 -40.82 -0.36 4.03 16 34 H 0.10 0.63 3.67 -51.93 -0.19 0.44 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.87 8.04 -51.93 -0.42 0.46 16 38 H 0.07 0.59 6.34 -51.93 -0.33 0.26 16 39 H 0.10 1.08 6.80 -51.93 -0.35 0.72 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.63 7.02 -51.93 -0.36 1.27 16 42 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 43 H 0.02 0.43 7.67 -51.93 -0.40 0.03 16 44 H 0.03 0.64 4.47 -51.93 -0.23 0.40 16 45 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 46 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -35.97 354.16 -8.88 -44.85 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.66 Total: 4.36 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 0.14 Total: -0.01 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.37 Total: -70.97 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.66 Total: -55.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 55.58 SS G_CDS: -0.65 Total: 54.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.97 -8.88 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922016144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.495 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds