Wall clock time and date at job start Tue Mar 31 2020 17:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 H 1.08992 * 109.72664 * 331.68479 * 3 2 1 5 5 C 1.51340 * 109.59570 * 211.28598 * 3 2 1 6 6 O 1.21284 * 120.34386 * 128.51125 * 5 3 2 7 7 N 1.34242 * 119.30288 * 308.23581 * 5 3 2 8 8 C 1.46705 * 120.37260 * 357.41081 * 7 5 3 9 9 C 1.53029 * 109.07087 * 288.71622 * 8 7 5 10 10 C 1.52453 * 110.17045 * 88.67347 * 9 8 7 11 11 N 1.46067 * 111.51703 * 297.33614 * 10 9 8 12 12 S 1.65599 * 119.80846 * 242.96998 * 11 10 9 13 13 O 1.42105 * 106.39867 * 203.54015 * 12 11 10 14 14 O 1.42103 * 106.40520 * 336.45549 * 12 11 10 15 15 N 1.65597 * 107.21908 * 90.00303 * 12 11 10 16 16 C 1.46509 * 119.99495 * 269.99653 * 15 12 11 17 17 C 1.46490 * 120.00418 * 89.99723 * 15 12 11 18 18 H 1.08996 * 109.47236 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47274 * 239.99799 * 17 15 12 20 20 C 1.50704 * 109.47199 * 120.00209 * 17 15 12 21 21 H 1.08000 * 119.99883 * 359.97438 * 20 17 15 22 22 C 1.37882 * 119.99946 * 180.02562 * 20 17 15 23 23 N 1.31518 * 119.99776 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 119.99868 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47399 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.46744 * 119.99955 * 24 22 20 27 27 H 1.48503 * 109.47154 * 239.99527 * 24 22 20 28 28 H 1.09006 * 109.47381 * 299.99871 * 1 2 3 29 29 H 1.09000 * 109.47669 * 59.99751 * 1 2 3 30 30 H 1.09003 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46731 * 239.99935 * 2 1 3 32 32 H 1.08999 * 109.46928 * 120.00276 * 2 1 3 33 33 H 0.96994 * 119.81738 * 177.38531 * 7 5 3 34 34 H 1.09005 * 109.53549 * 48.59647 * 8 7 5 35 35 H 1.09002 * 109.53783 * 168.75810 * 8 7 5 36 36 H 1.09002 * 109.35774 * 208.88889 * 9 8 7 37 37 H 1.08998 * 109.35974 * 328.60252 * 9 8 7 38 38 H 1.09001 * 109.07435 * 57.86387 * 10 9 8 39 39 H 1.09004 * 109.07089 * 176.80978 * 10 9 8 40 40 H 1.08999 * 109.46998 * 89.99868 * 16 15 12 41 41 H 1.09005 * 109.47028 * 210.00176 * 16 15 12 42 42 H 1.09001 * 109.46919 * 329.99826 * 16 15 12 43 43 H 1.09004 * 109.47114 * 300.00269 * 19 17 15 44 44 H 1.09005 * 109.47226 * 59.99984 * 19 17 15 45 45 H 1.09000 * 109.47614 * 180.02562 * 19 17 15 46 46 H 0.97000 * 119.99571 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3110 2.0904 -0.4866 5 6 3.3579 1.5150 -0.7404 6 8 3.5190 2.3272 -1.6266 7 7 4.3485 0.6745 -0.4022 8 6 4.1762 -0.2655 0.7108 9 6 4.1865 0.5125 2.0285 10 6 2.7751 0.9689 2.3806 11 7 2.2429 1.8870 1.3769 12 16 1.8697 3.4437 1.8008 13 8 0.9096 3.8974 0.8565 14 8 1.6362 3.4330 3.2025 15 7 3.2300 4.3569 1.5602 16 6 4.2006 4.5250 2.6447 17 6 3.4629 4.9966 0.2631 18 1 2.6404 4.7596 -0.4118 19 6 4.7747 4.4808 -0.3318 20 6 3.5478 6.4899 0.4474 21 1 3.4388 6.9194 1.4323 22 6 3.7637 7.3078 -0.6414 23 7 3.8960 6.7846 -1.8408 24 14 3.8682 9.1588 -0.4130 25 1 3.6887 9.4913 1.0231 26 1 5.1971 9.6395 -0.8696 27 1 2.8028 9.8170 -1.2111 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.1828 0.6885 -0.8968 34 1 3.2254 -0.7877 0.6031 35 1 4.9917 -0.9887 0.7068 36 1 4.5677 -0.1284 2.8236 37 1 4.8314 1.3854 1.9277 38 1 2.1246 0.0967 2.4459 39 1 2.7940 1.4707 3.3480 40 1 4.9454 3.7309 2.5920 41 1 4.6930 5.4924 2.5448 42 1 3.6854 4.4769 3.6040 43 1 5.5975 4.7174 0.3430 44 1 4.7134 3.4007 -0.4651 45 1 4.9483 4.9571 -1.2967 46 1 4.0482 7.3600 -2.6068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922016144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:45 Heat of formation + Delta-G solvation = -112.183102 kcal Electronic energy + Delta-G solvation = -30663.594485 eV Core-core repulsion = 26715.031556 eV Total energy + Delta-G solvation = -3948.562929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58934 -38.63277 -38.32135 -37.85574 -36.97678 -35.81366 -34.54585 -34.11558 -31.92523 -30.90802 -28.08922 -27.23609 -27.05656 -26.37294 -24.20902 -22.65333 -21.39617 -21.22835 -20.07056 -19.20253 -18.68122 -18.38959 -17.98994 -17.63227 -17.11845 -16.57691 -16.19101 -15.81610 -15.29279 -15.17473 -14.97235 -14.71317 -14.64415 -14.37863 -14.28512 -13.82512 -13.73441 -13.54176 -13.45751 -13.33271 -13.18282 -13.04324 -13.00107 -12.74963 -12.64498 -12.61808 -12.44402 -12.23621 -12.12243 -12.02957 -11.95078 -11.74575 -11.51897 -11.16605 -10.89714 -10.52351 -9.97155 -9.87939 -9.65468 -8.10073 -6.27325 -0.46439 1.37515 1.39335 1.47947 1.51375 2.04541 2.37556 2.41802 2.52445 3.15529 3.25083 3.44789 3.66979 3.87098 3.94705 4.06382 4.11167 4.22866 4.36297 4.52080 4.59398 4.65123 4.69508 4.72505 4.82408 4.86424 4.93189 5.00222 5.01672 5.08300 5.12410 5.13816 5.20255 5.28056 5.37653 5.45887 5.54675 5.59738 5.76936 5.89284 6.04823 6.19012 6.30254 6.32202 6.82080 7.33695 7.41580 8.93013 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.005353 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.305320 B = 5229.560364 C = 5592.647493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C 0.129 3.871 4 H 0.091 0.909 5 C 0.496 3.504 6 O -0.565 6.565 7 N -0.711 5.711 8 C 0.080 3.920 9 C -0.159 4.159 10 C 0.093 3.907 11 N -0.983 5.983 12 S 2.780 3.220 13 O -1.014 7.014 14 O -0.996 6.996 15 N -0.998 5.998 16 C 0.095 3.905 17 C 0.288 3.712 18 H 0.012 0.988 19 C -0.125 4.125 20 C -0.543 4.543 21 H 0.058 0.942 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.960 3.040 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.402 0.598 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.025 0.975 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 -22.261 9.043 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.166 4.166 3 C 0.019 3.981 4 H 0.109 0.891 5 C 0.279 3.721 6 O -0.443 6.443 7 N -0.364 5.364 8 C -0.042 4.042 9 C -0.199 4.199 10 C -0.030 4.030 11 N -0.825 5.825 12 S 2.792 3.208 13 O -0.998 6.998 14 O -0.980 6.980 15 N -0.839 5.839 16 C -0.051 4.051 17 C 0.183 3.817 18 H 0.030 0.970 19 C -0.184 4.184 20 C -0.583 4.583 21 H 0.076 0.924 22 C -0.188 4.188 23 N -0.551 5.551 24 Si 0.785 3.215 25 H -0.190 1.190 26 H -0.199 1.199 27 H -0.209 1.209 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.238 0.762 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.812 -21.492 8.875 23.266 hybrid contribution 0.670 1.693 -0.807 1.992 sum 1.481 -19.799 8.068 21.430 Atomic orbital electron populations 1.21884 0.94594 1.03437 1.01568 1.22286 0.97244 0.91288 1.05747 1.21405 0.93906 1.01407 0.81404 0.89142 1.21398 0.87513 0.80030 0.83111 1.90885 1.82437 1.37167 1.33766 1.45968 1.16668 1.38158 1.35585 1.22575 1.06828 0.91184 0.83628 1.22429 0.95933 1.01707 0.99782 1.21696 0.96347 0.95144 0.89834 1.57751 1.80025 1.28953 1.15731 1.01719 0.73623 0.73287 0.72200 1.93538 1.60601 1.80795 1.64902 1.93497 1.85304 1.87244 1.31972 1.57615 1.40762 1.64115 1.21408 1.21446 0.92483 1.03056 0.88081 1.18173 0.94264 0.91120 0.78107 0.96970 1.21906 0.96996 0.98989 1.00544 1.21736 1.49891 0.92517 0.94160 0.92384 1.25775 0.94801 1.03389 0.94822 1.70108 1.49334 1.36346 0.99264 0.85488 0.77785 0.79844 0.78387 1.19004 1.19889 1.20913 0.93352 0.93802 0.89051 0.88925 0.85438 0.76229 0.86944 0.86036 0.85341 0.92675 0.86778 0.88908 0.91695 0.91352 0.90604 0.95588 0.93311 0.92976 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.73 71.98 0.70 -2.12 16 2 C -0.13 -2.19 3.92 30.59 0.12 -2.07 16 3 C 0.13 3.80 2.59 44.52 0.12 3.92 16 4 H 0.09 3.45 6.49 -2.39 -0.02 3.43 16 5 C 0.50 15.99 5.72 87.94 0.50 16.50 16 6 O -0.57 -25.51 15.33 -3.04 -0.05 -25.56 16 7 N -0.71 -14.95 5.29 -462.53 -2.45 -17.40 16 8 C 0.08 0.83 6.34 86.35 0.55 1.37 16 9 C -0.16 -1.95 5.92 30.42 0.18 -1.77 16 10 C 0.09 1.63 5.58 86.28 0.48 2.11 16 11 N -0.98 -28.29 2.94 -499.09 -1.47 -29.76 16 12 S 2.78 114.07 6.09 -56.49 -0.34 113.73 16 13 O -1.01 -51.62 15.20 -128.00 -1.95 -53.56 16 14 O -1.00 -40.04 15.24 -128.00 -1.95 -41.99 16 15 N -1.00 -44.18 3.12 -520.44 -1.62 -45.81 16 16 C 0.09 3.42 9.65 127.77 1.23 4.66 16 17 C 0.29 15.68 2.62 44.25 0.12 15.80 16 18 H 0.01 0.80 6.91 -2.39 -0.02 0.78 16 19 C -0.12 -6.45 8.39 71.98 0.60 -5.85 16 20 C -0.54 -31.90 7.99 25.60 0.20 -31.70 16 21 H 0.06 3.34 7.33 -2.91 -0.02 3.31 16 22 C 0.01 0.70 5.30 84.66 0.45 1.15 16 23 N -0.91 -56.48 11.32 21.45 0.24 -56.23 16 24 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.36 7.71 -2.39 -0.02 1.34 16 32 H 0.13 1.26 3.41 -2.39 -0.01 1.25 16 33 H 0.40 8.11 8.93 -92.71 -0.83 7.28 16 34 H 0.11 0.82 3.67 -2.38 -0.01 0.81 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.05 1.01 8.04 -2.39 -0.02 0.99 16 38 H 0.11 1.16 6.34 -2.39 -0.02 1.14 16 39 H 0.09 1.76 6.80 -2.39 -0.02 1.74 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 2.67 7.02 -2.38 -0.02 2.65 16 42 H 0.08 2.48 7.02 -2.39 -0.02 2.46 16 43 H 0.03 1.23 7.67 -2.39 -0.02 1.21 16 44 H 0.05 2.27 4.47 -2.38 -0.01 2.26 16 45 H 0.05 3.08 6.07 -2.39 -0.01 3.07 16 46 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -86.48 354.16 -2.11 -88.59 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.19 Total: 17.81 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.26 Total: 2.00 kcal Atomic # 7 Polarization: -143.90 SS G_CDS: -5.30 Total: -149.20 kcal Atomic # 8 Polarization: -117.17 SS G_CDS: -3.94 Total: -121.11 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 114.07 SS G_CDS: -0.34 Total: 113.73 kcal Total: -86.48 -2.11 -88.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922016144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.594 kcal (2) G-P(sol) polarization free energy of solvation -86.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds