Wall clock time and date at job start Tue Mar 31 2020 17:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 H 1.08997 * 109.72502 * 331.93248 * 3 2 1 5 5 C 1.51901 * 109.66096 * 211.22398 * 3 2 1 6 6 O 1.21279 * 120.34867 * 128.64728 * 5 3 2 7 7 N 1.34255 * 119.30373 * 308.71282 * 5 3 2 8 8 C 1.46706 * 120.36480 * 357.07162 * 7 5 3 9 9 C 1.53038 * 109.06742 * 288.70135 * 8 7 5 10 10 C 1.52453 * 110.17166 * 88.68570 * 9 8 7 11 11 N 1.46071 * 111.51148 * 297.32961 * 10 9 8 12 12 S 1.65605 * 119.80751 * 242.93806 * 11 10 9 13 13 O 1.42103 * 106.40299 * 341.29889 * 12 11 10 14 14 O 1.42101 * 106.39839 * 208.37916 * 12 11 10 15 15 N 1.65598 * 107.21643 * 94.83848 * 12 11 10 16 16 C 1.46506 * 119.99777 * 93.80950 * 15 12 11 17 17 C 1.46497 * 120.00290 * 273.81217 * 15 12 11 18 18 H 1.09000 * 109.47046 * 5.62788 * 17 15 12 19 19 C 1.52991 * 109.47192 * 125.63160 * 17 15 12 20 20 C 1.50709 * 109.46881 * 245.63289 * 17 15 12 21 21 H 1.07994 * 119.99920 * 359.97438 * 20 17 15 22 22 C 1.37872 * 119.99414 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00590 * 0.02562 * 22 20 17 24 24 Si 1.86806 * 119.99414 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.46946 * 90.00255 * 24 22 20 26 26 H 1.48511 * 109.46690 * 210.00020 * 24 22 20 27 27 H 1.48500 * 109.47326 * 329.99689 * 24 22 20 28 28 H 1.08998 * 109.47211 * 60.00206 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47072 * 300.00035 * 1 2 3 31 31 H 1.08996 * 109.47319 * 239.99698 * 2 1 3 32 32 H 1.08998 * 109.47211 * 119.99794 * 2 1 3 33 33 H 0.96993 * 119.81537 * 177.05139 * 7 5 3 34 34 H 1.09000 * 109.53821 * 168.82609 * 8 7 5 35 35 H 1.09001 * 109.60567 * 48.62108 * 8 7 5 36 36 H 1.08993 * 109.35503 * 328.46994 * 9 8 7 37 37 H 1.09002 * 109.35284 * 208.89504 * 9 8 7 38 38 H 1.08999 * 109.07272 * 176.80373 * 10 9 8 39 39 H 1.08998 * 109.07315 * 57.85369 * 10 9 8 40 40 H 1.09008 * 109.47035 * 89.99782 * 16 15 12 41 41 H 1.08990 * 109.47275 * 209.99559 * 16 15 12 42 42 H 1.08997 * 109.47492 * 330.00313 * 16 15 12 43 43 H 1.08999 * 109.47498 * 308.40153 * 19 17 15 44 44 H 1.09003 * 109.47686 * 68.40346 * 19 17 15 45 45 H 1.09007 * 109.47071 * 188.40110 * 19 17 15 46 46 H 0.96999 * 120.00440 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3090 2.0911 -0.4828 5 6 3.3636 1.5166 -0.7415 6 8 3.5259 2.3308 -1.6257 7 7 4.3515 0.6705 -0.4088 8 6 4.1779 -0.2721 0.7019 9 6 4.1959 0.5020 2.0220 10 6 2.7878 0.9638 2.3798 11 7 2.2570 1.8876 1.3805 12 16 1.8916 3.4446 1.8106 13 8 1.7740 3.4526 3.2267 14 8 0.8495 3.8668 0.9417 15 7 3.2111 4.3763 1.4457 16 6 3.2862 5.0665 0.1556 17 6 4.3033 4.5104 2.4128 18 1 4.1190 3.8529 3.2624 19 6 5.6250 4.1241 1.7461 20 6 4.3795 5.9380 2.8897 21 1 3.6842 6.6719 2.5100 22 6 5.3369 6.3068 3.8107 23 7 6.1839 5.4131 4.2727 24 14 5.4318 8.0765 4.4013 25 1 4.5707 8.2453 5.5993 26 1 6.8369 8.4068 4.7510 27 1 4.9636 8.9840 3.3231 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.1844 0.6823 -0.9057 34 1 4.9907 -0.9983 0.6941 35 1 3.2249 -0.7904 0.5962 36 1 4.8466 1.3706 1.9225 37 1 4.5765 -0.1432 2.8138 38 1 2.8119 1.4626 3.3487 39 1 2.1334 0.0945 2.4444 40 1 2.8400 6.0569 0.2468 41 1 4.3296 5.1643 -0.1440 42 1 2.7447 4.4921 -0.5960 43 1 5.5209 3.1488 1.2708 44 1 5.8840 4.8691 0.9938 45 1 6.4122 4.0792 2.4989 46 1 6.8572 5.6725 4.9209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922016145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:50 Heat of formation + Delta-G solvation = -89.277385 kcal Electronic energy + Delta-G solvation = -30479.280481 eV Core-core repulsion = 26531.710819 eV Total energy + Delta-G solvation = -3947.569662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53899 -37.36027 -36.76426 -36.11026 -35.27481 -34.89056 -33.20992 -32.53501 -30.98606 -29.04631 -27.16373 -25.60227 -25.48094 -25.03334 -23.40135 -20.87376 -20.45641 -20.08652 -18.83831 -17.65460 -17.34241 -16.83686 -16.55694 -16.26920 -15.69521 -15.07870 -14.79423 -14.45220 -14.15457 -13.90982 -13.75441 -13.47083 -13.42035 -13.06966 -12.87923 -12.76064 -12.42673 -12.35152 -12.01794 -11.77259 -11.71343 -11.66028 -11.56198 -11.30771 -11.16324 -11.06768 -10.96820 -10.86877 -10.75653 -10.59969 -10.44228 -10.22586 -10.09737 -9.91607 -9.27337 -9.03645 -8.86263 -8.44215 -7.91647 -6.06153 -4.10978 1.08455 2.56217 3.28521 3.31104 3.36998 3.40469 3.44592 4.00742 4.33127 4.42369 4.51940 4.66038 4.76202 4.83676 4.96416 5.03337 5.15517 5.26056 5.26916 5.42019 5.46739 5.52973 5.63149 5.69366 5.74330 5.77559 5.88071 6.05510 6.08794 6.24774 6.34172 6.47300 6.59713 6.73457 6.81670 6.83523 6.85476 7.01808 7.22427 7.46915 7.66105 7.80410 8.02923 8.24478 8.28926 8.90790 9.54540 11.00047 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.005027 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.886478 B = 5568.039199 C = 5894.093945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.133 3.867 4 H 0.129 0.871 5 C 0.510 3.490 6 O -0.534 6.534 7 N -0.719 5.719 8 C 0.086 3.914 9 C -0.167 4.167 10 C 0.109 3.891 11 N -0.997 5.997 12 S 2.771 3.229 13 O -0.967 6.967 14 O -0.989 6.989 15 N -0.985 5.985 16 C 0.110 3.890 17 C 0.274 3.726 18 H 0.051 0.949 19 C -0.140 4.140 20 C -0.518 4.518 21 H 0.061 0.939 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.398 0.602 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.011 0.989 44 H 0.035 0.965 45 H 0.086 0.914 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -16.302 -7.094 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.023 3.977 4 H 0.147 0.853 5 C 0.294 3.706 6 O -0.409 6.409 7 N -0.372 5.372 8 C -0.038 4.038 9 C -0.207 4.207 10 C -0.016 4.016 11 N -0.835 5.835 12 S 2.782 3.218 13 O -0.951 6.951 14 O -0.973 6.973 15 N -0.828 5.828 16 C -0.037 4.037 17 C 0.171 3.829 18 H 0.069 0.931 19 C -0.199 4.199 20 C -0.558 4.558 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.531 5.531 24 Si 0.725 3.275 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.030 0.970 44 H 0.054 0.946 45 H 0.104 0.896 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.251 -15.588 -6.937 17.852 hybrid contribution 1.066 0.849 0.102 1.366 sum -4.186 -14.739 -6.835 16.777 Atomic orbital electron populations 1.21839 0.94508 1.01949 1.02847 1.22219 0.97346 0.94582 1.03607 1.21569 0.94320 0.99307 0.82544 0.85344 1.21337 0.86579 0.79901 0.82824 1.90756 1.82156 1.35954 1.31993 1.45903 1.17880 1.38328 1.35096 1.22247 1.04169 0.91558 0.85847 1.22445 0.98369 1.02307 0.97570 1.21211 0.94002 0.94493 0.91932 1.58356 1.79888 1.30469 1.14759 1.02301 0.73774 0.72381 0.73379 1.93600 1.86175 1.85930 1.29364 1.93530 1.54696 1.80792 1.68295 1.57698 1.38852 1.60417 1.25841 1.21189 1.02759 0.96436 0.83271 1.18643 0.81600 0.97699 0.84972 0.93098 1.22065 1.01159 0.96270 1.00418 1.21360 1.15823 0.94435 1.24160 0.92057 1.24877 0.95323 0.97653 0.95884 1.69865 1.18920 1.33448 1.30889 0.86514 0.77113 0.84698 0.79201 1.20553 1.21217 1.19868 0.92132 0.92204 0.92102 0.90564 0.88566 0.76570 0.89850 0.88611 0.89400 0.89395 0.87844 0.90819 0.93592 0.91197 0.92392 0.97035 0.94558 0.89570 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.73 37.16 0.36 -1.00 16 2 C -0.14 -1.26 3.93 -26.73 -0.11 -1.37 16 3 C 0.13 1.77 2.65 -68.40 -0.18 1.58 16 4 H 0.13 1.91 6.59 -51.93 -0.34 1.57 16 5 C 0.51 7.29 6.88 -10.63 -0.07 7.22 16 6 O -0.53 -9.55 17.11 5.56 0.10 -9.46 16 7 N -0.72 -7.87 5.29 -59.82 -0.32 -8.19 16 8 C 0.09 0.69 6.33 -3.91 -0.02 0.67 16 9 C -0.17 -1.75 5.92 -26.99 -0.16 -1.91 16 10 C 0.11 1.33 5.60 -4.55 -0.03 1.30 16 11 N -1.00 -14.88 2.94 -108.41 -0.32 -15.20 16 12 S 2.77 55.81 6.03 -107.50 -0.65 55.16 16 13 O -0.97 -22.22 15.27 -57.17 -0.87 -23.09 16 14 O -0.99 -21.08 15.71 -57.17 -0.90 -21.98 16 15 N -0.99 -21.41 3.12 -115.85 -0.36 -21.77 16 16 C 0.11 2.23 9.80 59.85 0.59 2.82 16 17 C 0.27 6.69 2.56 -69.08 -0.18 6.52 16 18 H 0.05 1.34 7.13 -51.93 -0.37 0.97 16 19 C -0.14 -3.18 8.47 37.15 0.31 -2.86 16 20 C -0.52 -14.22 8.45 -34.44 -0.29 -14.51 16 21 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -24.67 11.42 55.43 0.63 -24.03 16 24 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 0.60 7.71 -51.93 -0.40 0.20 16 32 H 0.10 0.72 3.42 -51.93 -0.18 0.54 16 33 H 0.40 4.04 8.92 -40.82 -0.36 3.68 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.64 3.66 -51.93 -0.19 0.45 16 36 H 0.09 1.22 6.57 -51.93 -0.34 0.87 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.48 6.68 -51.93 -0.35 1.14 16 39 H 0.07 0.65 6.33 -51.93 -0.33 0.33 16 40 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 41 H 0.07 1.41 6.34 -51.93 -0.33 1.08 16 42 H 0.06 1.12 6.83 -51.93 -0.35 0.76 16 43 H 0.01 0.22 6.67 -51.93 -0.35 -0.13 16 44 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 45 H 0.09 2.13 6.35 -51.93 -0.33 1.80 16 46 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -33.71 358.46 -8.84 -42.55 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.66 Total: 4.00 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 0.13 Total: 0.13 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -0.36 Total: -69.18 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -1.68 Total: -54.52 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.65 Total: 55.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.71 -8.84 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922016145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.727 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds