Wall clock time and date at job start Tue Mar 31 2020 17:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.52995 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47796 * 54.99822 * 4 3 2 6 6 C 1.50703 * 109.47004 * 174.99975 * 4 3 2 7 7 O 1.21278 * 119.99995 * 34.99796 * 6 4 3 8 8 N 1.34778 * 119.99985 * 214.99522 * 6 4 3 9 9 C 1.46501 * 120.00002 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46969 * 180.02562 * 9 8 6 11 11 C 1.53778 * 113.61448 * 274.13543 * 10 9 8 12 12 C 1.53959 * 87.02248 * 220.05137 * 11 10 9 13 13 N 1.46501 * 113.53370 * 270.80973 * 12 11 10 14 14 C 1.36936 * 119.99681 * 252.49356 * 13 12 11 15 15 H 1.07993 * 120.00474 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00030 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00381 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46835 * 59.99927 * 18 16 14 20 20 H 1.48499 * 109.47580 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47099 * 300.00429 * 18 16 14 22 22 C 1.53780 * 113.61339 * 176.52915 * 10 9 8 23 23 S 1.81405 * 109.47025 * 294.99561 * 4 3 2 24 24 N 1.65597 * 104.44945 * 300.00455 * 23 4 3 25 25 O 1.42098 * 110.54249 * 188.37701 * 23 4 3 26 26 O 1.42096 * 110.54236 * 51.62790 * 23 4 3 27 27 H 1.09004 * 109.46931 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47310 * 300.00369 * 1 2 3 29 29 H 1.08999 * 109.47260 * 60.00671 * 1 2 3 30 30 H 1.08997 * 109.46785 * 239.99613 * 2 1 3 31 31 H 1.08997 * 109.46957 * 120.00040 * 2 1 3 32 32 H 1.08996 * 109.47418 * 59.99697 * 3 2 1 33 33 H 1.09002 * 109.46955 * 300.00113 * 3 2 1 34 34 H 0.97000 * 120.00126 * 0.02562 * 8 6 4 35 35 H 1.09002 * 109.47004 * 300.00283 * 9 8 6 36 36 H 1.08996 * 109.47204 * 60.00352 * 9 8 6 37 37 H 1.08996 * 112.85330 * 45.33181 * 10 9 8 38 38 H 1.09007 * 113.61293 * 334.56768 * 11 10 9 39 39 H 1.08998 * 113.61991 * 105.46620 * 11 10 9 40 40 H 1.09002 * 113.74096 * 139.93997 * 12 11 10 41 41 H 0.96998 * 119.99512 * 72.49276 * 13 12 11 42 42 H 0.97000 * 119.99771 * 179.97438 * 17 16 14 43 43 H 1.09000 * 113.61584 * 254.52353 * 22 10 9 44 44 H 1.09000 * 113.61560 * 25.43309 * 22 10 9 45 45 H 0.97001 * 120.00224 * 150.00427 * 24 23 4 46 46 H 0.97005 * 120.00050 * 329.72196 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0722 2.8580 -0.1245 7 8 3.4634 3.7656 0.4012 8 7 5.1981 3.1151 -0.8194 9 6 5.6860 4.4912 -0.9402 10 6 6.9695 4.5058 -1.7729 11 6 8.2413 4.2438 -0.9491 12 6 8.9217 5.3286 -1.8038 13 7 9.5445 4.8075 -3.0231 14 6 10.9086 4.7308 -3.1162 15 1 11.5252 5.0548 -2.2909 16 6 11.4987 4.2376 -4.2717 17 7 10.7472 3.8432 -5.2778 18 14 13.3594 4.1335 -4.3990 19 1 13.8804 3.2502 -3.3249 20 1 13.7346 3.5759 -5.7232 21 1 13.9425 5.4911 -4.2497 22 6 7.5198 5.9183 -2.0316 23 16 4.1752 0.7196 1.5491 24 7 3.5574 1.7005 2.7317 25 8 5.5826 0.8820 1.6589 26 8 3.5628 -0.5409 1.7840 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 5.6848 2.3892 -1.2401 35 1 4.9287 5.1036 -1.4297 36 1 5.8918 4.8922 0.0522 37 1 6.8978 3.8937 -2.6719 38 1 8.1437 4.5139 0.1025 39 1 8.6579 3.2471 -1.0942 40 1 9.5837 5.9830 -1.2366 41 1 8.9906 4.5169 -3.7644 42 1 11.1596 3.4988 -6.0854 43 1 7.3550 6.2715 -3.0496 44 1 7.2247 6.6470 -1.2766 45 1 3.3542 1.3358 3.6072 46 1 3.4026 2.6407 2.5501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100536425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:00 Heat of formation + Delta-G solvation = -90.005856 kcal Electronic energy + Delta-G solvation = -27123.934374 eV Core-core repulsion = 23176.333123 eV Total energy + Delta-G solvation = -3947.601251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32479 -38.65210 -37.69929 -36.37805 -35.85661 -34.92433 -33.44487 -33.26660 -31.41063 -30.13247 -27.62393 -25.19903 -25.05797 -23.66562 -21.86891 -21.79253 -21.11883 -19.89151 -18.60789 -18.36740 -17.95598 -17.35882 -17.06963 -16.75123 -16.19524 -15.66385 -15.32977 -14.94344 -14.74328 -14.44798 -14.27889 -14.04883 -13.76450 -13.48528 -13.12970 -12.91158 -12.84828 -12.57446 -12.49468 -12.43294 -12.35055 -11.95680 -11.90176 -11.49518 -11.41583 -11.34905 -11.07959 -10.85268 -10.74292 -10.68471 -10.53814 -10.34137 -10.21354 -9.91303 -9.71408 -9.56090 -9.23242 -8.90297 -7.02566 -5.82796 -3.11876 -0.30876 2.13166 2.37370 2.74112 3.18342 3.41759 3.46271 3.47087 3.62324 4.00770 4.34396 4.45133 4.54263 4.67566 4.75709 4.96465 4.97614 5.09815 5.16676 5.23128 5.42357 5.42642 5.46044 5.54225 5.61953 5.67129 5.73797 5.74635 5.83467 5.89595 6.00977 6.03631 6.16188 6.18788 6.33652 6.53806 6.73922 6.76432 6.84252 7.01254 7.12889 7.67118 7.73814 8.36478 9.47156 10.04142 10.38307 11.39604 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002372 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.924264 B =11799.351913 C =12038.483114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.085 4.085 4 C -0.621 4.621 5 H 0.160 0.840 6 C 0.529 3.471 7 O -0.530 6.530 8 N -0.705 5.705 9 C 0.127 3.873 10 C -0.122 4.122 11 C -0.170 4.170 12 C 0.167 3.833 13 N -0.706 5.706 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.147 4.147 23 S 2.629 3.371 24 N -1.243 6.243 25 O -0.942 6.942 26 O -0.947 6.947 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.407 0.593 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.421 0.579 46 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.289 -5.218 13.218 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C -0.123 4.123 4 C -0.730 4.730 5 H 0.178 0.822 6 C 0.311 3.689 7 O -0.407 6.407 8 N -0.355 5.355 9 C 0.005 3.995 10 C -0.141 4.141 11 C -0.211 4.211 12 C 0.055 3.945 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.186 4.186 23 S 2.716 3.284 24 N -0.919 5.919 25 O -0.931 6.931 26 O -0.936 6.936 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.242 0.758 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.251 0.749 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -20.857 -5.428 13.513 25.438 hybrid contribution 0.527 0.060 -0.924 1.066 sum -20.330 -5.368 12.589 24.507 Atomic orbital electron populations 1.21689 0.94886 1.02041 1.01892 1.22250 0.97465 0.95427 1.05494 1.21276 0.86332 0.99054 1.05653 1.30740 1.09858 1.06639 1.25803 0.82194 1.19186 0.81309 0.88190 0.80214 1.90727 1.56925 1.45434 1.47623 1.46099 1.25309 1.11594 1.52501 1.21648 0.96037 0.81026 1.00811 1.22744 0.92346 0.99821 0.99201 1.23944 0.96316 1.02731 0.98069 1.21095 0.91115 0.93080 0.89213 1.42162 1.04124 1.74625 1.13503 1.19248 0.82781 1.35623 0.99719 0.91004 1.24765 0.97989 1.01704 0.96417 1.69652 1.34020 1.48740 1.05758 0.86234 0.85233 0.77743 0.76771 1.21176 1.21693 1.21192 1.23440 0.98857 0.94656 1.01672 1.04555 0.74602 0.73904 0.75350 1.53081 1.86343 1.24474 1.28038 1.93687 1.29491 1.85745 1.84198 1.93550 1.77139 1.39842 1.83081 0.92252 0.92492 0.92793 0.91274 0.87564 0.89429 0.89568 0.75760 0.91260 0.90890 0.88773 0.91196 0.91274 0.91863 0.78143 0.93390 0.91267 0.90394 0.74880 0.74959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.17 -1.20 5.65 -26.73 -0.15 -1.36 16 3 C -0.08 -0.62 4.22 -26.73 -0.11 -0.73 16 4 C -0.62 -4.99 2.83 -27.88 -0.08 -5.07 16 5 H 0.16 0.87 8.11 -51.93 -0.42 0.44 16 6 C 0.53 5.67 6.50 -10.98 -0.07 5.60 16 7 O -0.53 -6.65 15.26 5.56 0.08 -6.57 16 8 N -0.71 -7.81 5.56 -60.29 -0.33 -8.15 16 9 C 0.13 1.56 5.50 -4.04 -0.02 1.53 16 10 C -0.12 -1.74 3.62 -89.81 -0.33 -2.07 16 11 C -0.17 -2.79 7.44 -25.83 -0.19 -2.99 16 12 C 0.17 3.19 4.57 -67.02 -0.31 2.89 16 13 N -0.71 -17.13 5.31 -52.55 -0.28 -17.40 16 14 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.15 -2.24 7.39 -25.92 -0.19 -2.43 16 23 S 2.63 24.49 5.46 -107.50 -0.59 23.91 16 24 N -1.24 -8.94 8.91 60.35 0.54 -8.41 16 25 O -0.94 -12.49 18.01 -57.54 -1.04 -13.53 16 26 O -0.95 -10.12 14.89 -57.54 -0.86 -10.98 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.87 4.90 -51.93 -0.25 0.62 16 32 H 0.09 0.60 7.63 -51.93 -0.40 0.20 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 3.99 8.45 -40.82 -0.34 3.65 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.38 9.83 7.90 -40.82 -0.32 9.51 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 45 H 0.42 2.16 8.96 -34.47 -0.31 1.85 16 46 H 0.42 2.99 7.54 -34.47 -0.26 2.73 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -34.57 385.34 -9.61 -44.19 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.32 Total: 13.35 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.33 Total: -12.41 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.65 Total: -60.87 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.81 Total: -31.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 24.49 SS G_CDS: -0.59 Total: 23.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.57 -9.61 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100536425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.820 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds