Wall clock time and date at job start Tue Mar 31 2020 17:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.52995 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47796 * 54.99822 * 4 3 2 6 6 C 1.50703 * 109.47004 * 174.99975 * 4 3 2 7 7 O 1.21278 * 119.99995 * 34.99796 * 6 4 3 8 8 N 1.34778 * 119.99985 * 214.99522 * 6 4 3 9 9 C 1.46501 * 120.00002 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46969 * 180.02562 * 9 8 6 11 11 C 1.53778 * 113.61448 * 274.13543 * 10 9 8 12 12 C 1.53959 * 87.02248 * 220.05137 * 11 10 9 13 13 N 1.46501 * 113.53370 * 270.80973 * 12 11 10 14 14 C 1.36936 * 119.99681 * 252.49356 * 13 12 11 15 15 H 1.07993 * 120.00474 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00030 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00381 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46835 * 59.99927 * 18 16 14 20 20 H 1.48499 * 109.47580 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47099 * 300.00429 * 18 16 14 22 22 C 1.53780 * 113.61339 * 176.52915 * 10 9 8 23 23 S 1.81405 * 109.47025 * 294.99561 * 4 3 2 24 24 N 1.65597 * 104.44945 * 300.00455 * 23 4 3 25 25 O 1.42098 * 110.54249 * 188.37701 * 23 4 3 26 26 O 1.42096 * 110.54236 * 51.62790 * 23 4 3 27 27 H 1.09004 * 109.46931 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47310 * 300.00369 * 1 2 3 29 29 H 1.08999 * 109.47260 * 60.00671 * 1 2 3 30 30 H 1.08997 * 109.46785 * 239.99613 * 2 1 3 31 31 H 1.08997 * 109.46957 * 120.00040 * 2 1 3 32 32 H 1.08996 * 109.47418 * 59.99697 * 3 2 1 33 33 H 1.09002 * 109.46955 * 300.00113 * 3 2 1 34 34 H 0.97000 * 120.00126 * 0.02562 * 8 6 4 35 35 H 1.09002 * 109.47004 * 300.00283 * 9 8 6 36 36 H 1.08996 * 109.47204 * 60.00352 * 9 8 6 37 37 H 1.08996 * 112.85330 * 45.33181 * 10 9 8 38 38 H 1.09007 * 113.61293 * 334.56768 * 11 10 9 39 39 H 1.08998 * 113.61991 * 105.46620 * 11 10 9 40 40 H 1.09002 * 113.74096 * 139.93997 * 12 11 10 41 41 H 0.96998 * 119.99512 * 72.49276 * 13 12 11 42 42 H 0.97000 * 119.99771 * 179.97438 * 17 16 14 43 43 H 1.09000 * 113.61584 * 254.52353 * 22 10 9 44 44 H 1.09000 * 113.61560 * 25.43309 * 22 10 9 45 45 H 0.97001 * 120.00224 * 150.00427 * 24 23 4 46 46 H 0.97005 * 120.00050 * 329.72196 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0722 2.8580 -0.1245 7 8 3.4634 3.7656 0.4012 8 7 5.1981 3.1151 -0.8194 9 6 5.6860 4.4912 -0.9402 10 6 6.9695 4.5058 -1.7729 11 6 8.2413 4.2438 -0.9491 12 6 8.9217 5.3286 -1.8038 13 7 9.5445 4.8075 -3.0231 14 6 10.9086 4.7308 -3.1162 15 1 11.5252 5.0548 -2.2909 16 6 11.4987 4.2376 -4.2717 17 7 10.7472 3.8432 -5.2778 18 14 13.3594 4.1335 -4.3990 19 1 13.8804 3.2502 -3.3249 20 1 13.7346 3.5759 -5.7232 21 1 13.9425 5.4911 -4.2497 22 6 7.5198 5.9183 -2.0316 23 16 4.1752 0.7196 1.5491 24 7 3.5574 1.7005 2.7317 25 8 5.5826 0.8820 1.6589 26 8 3.5628 -0.5409 1.7840 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 5.6848 2.3892 -1.2401 35 1 4.9287 5.1036 -1.4297 36 1 5.8918 4.8922 0.0522 37 1 6.8978 3.8937 -2.6719 38 1 8.1437 4.5139 0.1025 39 1 8.6579 3.2471 -1.0942 40 1 9.5837 5.9830 -1.2366 41 1 8.9906 4.5169 -3.7644 42 1 11.1596 3.4988 -6.0854 43 1 7.3550 6.2715 -3.0496 44 1 7.2247 6.6470 -1.2766 45 1 3.3542 1.3358 3.6072 46 1 3.4026 2.6407 2.5501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100536425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:00 Heat of formation + Delta-G solvation = -118.023221 kcal Electronic energy + Delta-G solvation = -27125.149298 eV Core-core repulsion = 23176.333123 eV Total energy + Delta-G solvation = -3948.816175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23012 -39.96334 -38.50506 -37.22259 -36.54153 -36.05396 -35.02583 -34.06400 -32.34723 -31.71417 -28.78856 -26.42811 -26.10990 -25.37506 -23.12916 -22.39681 -21.96900 -20.64753 -19.89738 -19.36048 -19.04879 -18.76516 -17.92461 -17.53294 -17.08565 -16.66890 -16.47800 -16.17046 -15.77514 -15.73077 -15.36771 -15.01404 -14.84199 -14.59455 -14.57736 -13.90828 -13.67974 -13.53297 -13.34849 -13.30986 -13.27451 -13.17022 -12.92688 -12.92346 -12.62936 -12.48932 -12.20442 -12.08107 -12.01069 -11.93910 -11.62221 -11.48189 -11.37100 -11.28124 -11.04640 -10.91435 -10.76986 -10.18608 -8.99549 -7.95621 -5.23494 -1.05450 1.30511 1.47838 1.50213 1.56179 1.64121 1.95017 2.46454 2.55842 2.91461 3.30841 3.37295 3.60445 3.72546 3.78090 3.83775 3.90352 4.12036 4.14913 4.21782 4.33258 4.41519 4.56770 4.71069 4.72005 4.75303 4.89411 4.94318 4.95880 5.00521 5.08916 5.13999 5.21406 5.25212 5.34433 5.35987 5.44021 5.50569 5.53495 5.66756 6.24673 6.27099 6.28445 6.88861 7.33475 8.10927 8.33058 9.27440 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002372 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.924264 B =11799.351913 C =12038.483114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.171 4.171 3 C -0.084 4.084 4 C -0.610 4.610 5 H 0.187 0.813 6 C 0.528 3.472 7 O -0.546 6.546 8 N -0.708 5.708 9 C 0.134 3.866 10 C -0.105 4.105 11 C -0.159 4.159 12 C 0.142 3.858 13 N -0.720 5.720 14 C -0.243 4.243 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.278 1.278 22 C -0.131 4.131 23 S 2.641 3.359 24 N -1.235 6.235 25 O -0.985 6.985 26 O -0.962 6.962 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.413 0.587 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.430 0.570 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 -4.857 14.160 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.209 4.209 3 C -0.123 4.123 4 C -0.721 4.721 5 H 0.205 0.795 6 C 0.311 3.689 7 O -0.425 6.425 8 N -0.359 5.359 9 C 0.012 3.988 10 C -0.124 4.124 11 C -0.199 4.199 12 C 0.032 3.968 13 N -0.358 5.358 14 C -0.375 4.375 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.206 1.206 20 H -0.222 1.222 21 H -0.204 1.204 22 C -0.170 4.170 23 S 2.730 3.270 24 N -0.914 5.914 25 O -0.974 6.974 26 O -0.951 6.951 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.263 0.737 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -22.041 -5.064 14.535 26.883 hybrid contribution 0.817 -0.004 -1.142 1.404 sum -21.224 -5.068 13.392 25.603 Atomic orbital electron populations 1.21720 0.94266 1.02425 1.02354 1.22259 0.98093 0.95157 1.05346 1.21331 0.85440 0.99337 1.06153 1.30682 1.10479 1.05177 1.25742 0.79525 1.19464 0.80858 0.88955 0.79600 1.90722 1.57318 1.46262 1.48199 1.46106 1.25599 1.11402 1.52761 1.21486 0.94956 0.81889 1.00511 1.22525 0.92618 0.98726 0.98555 1.23787 0.96811 1.00255 0.99089 1.21441 0.92862 0.94438 0.88029 1.42289 1.03263 1.75266 1.14966 1.19629 0.84407 1.33973 0.99471 0.90673 1.25536 1.02124 1.02583 0.96481 1.69798 1.35465 1.50501 1.06171 0.85236 0.80431 0.77887 0.76357 1.20585 1.22216 1.20374 1.23322 0.95700 0.95773 1.02183 1.03959 0.73653 0.73708 0.75710 1.52867 1.85926 1.24367 1.28261 1.93645 1.32267 1.86391 1.85081 1.93538 1.77070 1.40991 1.83524 0.91964 0.92129 0.92285 0.90563 0.88599 0.88964 0.89090 0.75110 0.90446 0.90494 0.89866 0.89070 0.93673 0.92257 0.79309 0.94014 0.92179 0.87320 0.73735 0.74609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.17 -2.13 5.65 30.60 0.17 -1.95 16 3 C -0.08 -1.05 4.22 30.59 0.13 -0.92 16 4 C -0.61 -8.63 2.83 29.85 0.08 -8.54 16 5 H 0.19 1.58 8.11 -2.39 -0.02 1.56 16 6 C 0.53 10.23 6.50 87.66 0.57 10.80 16 7 O -0.55 -12.52 15.26 -3.02 -0.05 -12.56 16 8 N -0.71 -14.31 5.56 -463.06 -2.57 -16.89 16 9 C 0.13 2.96 5.50 86.38 0.47 3.44 16 10 C -0.11 -2.84 3.62 -10.27 -0.04 -2.88 16 11 C -0.16 -5.07 7.44 31.18 0.23 -4.83 16 12 C 0.14 5.34 4.57 45.58 0.21 5.55 16 13 N -0.72 -35.30 5.31 -320.16 -1.70 -36.99 16 14 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 15 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 18 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C -0.13 -3.76 7.39 31.12 0.23 -3.53 16 23 S 2.64 46.35 5.46 -56.49 -0.31 46.04 16 24 N -1.24 -16.18 8.91 37.02 0.33 -15.85 16 25 O -0.98 -25.56 18.01 -127.65 -2.30 -27.86 16 26 O -0.96 -19.66 14.89 -127.65 -1.90 -21.56 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.43 4.90 -2.39 -0.01 1.42 16 32 H 0.09 1.07 7.63 -2.39 -0.02 1.05 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.41 7.45 8.45 -92.71 -0.78 6.67 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.68 7.88 -2.39 -0.02 1.66 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.09 2.53 7.92 -2.38 -0.02 2.51 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.24 8.10 -2.39 -0.02 2.23 16 41 H 0.37 19.56 7.90 -92.71 -0.73 18.83 16 42 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 45 H 0.43 3.89 8.96 -96.74 -0.87 3.03 16 46 H 0.42 5.37 7.54 -96.74 -0.73 4.64 16 Total: -1.00 -74.01 385.34 -4.19 -78.20 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -2.09 Total: 37.83 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.08 Total: -20.07 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -3.66 Total: -127.88 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -4.25 Total: -61.99 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 46.35 SS G_CDS: -0.31 Total: 46.04 kcal Total: -74.01 -4.19 -78.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100536425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.822 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds