Wall clock time and date at job start Tue Mar 31 2020 17:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 N 1.46503 * 109.46904 * 240.00442 * 2 1 3 5 5 S 1.65601 * 119.99996 * 171.49421 * 4 2 1 6 6 C 1.81400 * 104.45010 * 61.55664 * 5 4 2 7 7 O 1.42099 * 104.28005 * 177.62912 * 5 4 2 8 8 O 1.42097 * 104.27667 * 305.48651 * 5 4 2 9 9 C 1.50699 * 109.47316 * 120.00374 * 2 1 3 10 10 O 1.21279 * 120.00019 * 265.00192 * 9 2 1 11 11 N 1.34773 * 119.99867 * 84.99687 * 9 2 1 12 12 C 1.46498 * 119.99934 * 180.02562 * 11 9 2 13 13 C 1.53001 * 109.47543 * 180.02562 * 12 11 9 14 14 C 1.53780 * 113.61728 * 175.00197 * 13 12 11 15 15 C 1.53774 * 87.07968 * 139.98048 * 14 13 12 16 16 N 1.46497 * 113.61368 * 219.93075 * 15 14 13 17 17 C 1.36942 * 120.00222 * 203.47004 * 16 15 14 18 18 H 1.07998 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99608 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47332 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46715 * 120.00202 * 21 19 17 24 24 H 1.48495 * 109.46909 * 239.99671 * 21 19 17 25 25 C 1.53777 * 87.17560 * 334.52671 * 15 14 13 26 26 H 1.09000 * 109.47089 * 300.00152 * 1 2 3 27 27 H 1.09000 * 109.47256 * 59.99808 * 1 2 3 28 28 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47029 * 172.07256 * 3 2 1 30 30 H 1.08996 * 109.47319 * 292.07760 * 3 2 1 31 31 H 1.09004 * 109.47088 * 52.07984 * 3 2 1 32 32 H 0.96999 * 120.00040 * 351.49206 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.07247 * 6 5 4 34 34 H 1.08997 * 109.47313 * 174.07555 * 6 5 4 35 35 H 1.09004 * 109.47110 * 294.07352 * 6 5 4 36 36 H 0.97000 * 120.00288 * 0.02562 * 11 9 2 37 37 H 1.09003 * 109.47110 * 60.00074 * 12 11 9 38 38 H 1.09001 * 109.47128 * 300.00094 * 12 11 9 39 39 H 1.09001 * 112.84782 * 43.80034 * 13 12 11 40 40 H 1.09001 * 113.61312 * 25.42988 * 14 13 12 41 41 H 1.08998 * 113.60863 * 254.53090 * 14 13 12 42 42 H 1.09000 * 113.61598 * 89.11898 * 15 14 13 43 43 H 0.97002 * 119.99928 * 23.47595 * 16 15 14 44 44 H 0.96996 * 119.99862 * 180.02562 * 20 19 17 45 45 H 1.08996 * 113.61690 * 140.02909 * 25 15 14 46 46 H 1.09003 * 113.61339 * 270.92327 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 3.6315 -0.6608 -1.5690 6 6 4.4365 -1.4735 -0.1611 7 8 3.7366 -1.4650 -2.7358 8 8 3.9585 0.7217 -1.6003 9 6 2.0324 -0.7105 1.2304 10 8 2.3208 -0.0750 2.2223 11 7 2.1610 -2.0521 1.2285 12 6 2.6489 -2.7428 2.4248 13 6 2.7010 -4.2486 2.1587 14 6 3.3162 -5.0572 3.3131 15 6 2.2281 -6.1115 3.0501 16 7 1.6664 -6.6925 4.2720 17 6 1.0759 -7.9275 4.2342 18 1 1.0246 -8.4733 3.3037 19 6 0.5432 -8.4778 5.3920 20 7 0.6053 -7.8124 6.5259 21 14 -0.2617 -10.1627 5.3406 22 1 -0.2024 -10.6977 3.9566 23 1 0.4575 -11.0830 6.2577 24 1 -1.6794 -10.0472 5.7669 25 6 1.3765 -4.9749 2.4604 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1208 1.4458 0.1417 30 1 1.7970 1.9138 -0.9523 31 1 1.5656 1.9956 0.8107 32 1 1.3966 -1.1652 -1.7700 33 1 3.9853 -2.4527 -0.0003 34 1 5.4996 -1.5931 -0.3698 35 1 4.3081 -0.8631 0.7328 36 1 1.9306 -2.5603 0.4351 37 1 1.9760 -2.5440 3.2589 38 1 3.6480 -2.3828 2.6702 39 1 3.1212 -4.4916 1.1828 40 1 3.2265 -4.5699 4.2839 41 1 4.3263 -5.4117 3.1080 42 1 2.5180 -6.8649 2.3177 43 1 1.7128 -6.2025 5.1078 44 1 0.2334 -8.1971 7.3349 45 1 0.8216 -5.2630 1.5677 46 1 0.7573 -4.4652 3.1986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100742291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:01 Heat of formation + Delta-G solvation = -68.648712 kcal Electronic energy + Delta-G solvation = -27826.351843 eV Core-core repulsion = 23879.676708 eV Total energy + Delta-G solvation = -3946.675136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75578 -38.74272 -37.57147 -36.71348 -36.28845 -35.04070 -33.37789 -31.07330 -30.39256 -29.78589 -27.92436 -27.54480 -25.20860 -24.26040 -23.22085 -21.23280 -20.64336 -19.75885 -19.14009 -18.16352 -18.09918 -17.10875 -16.82446 -16.27605 -16.03654 -15.72941 -15.18845 -14.84765 -14.80386 -14.34065 -13.91763 -13.73386 -13.65677 -13.42693 -13.29142 -13.07319 -12.98278 -12.69112 -12.54679 -12.38739 -12.19454 -12.10649 -12.02326 -11.93072 -11.53024 -11.46339 -11.33485 -11.22220 -10.96336 -10.89059 -10.58865 -10.32506 -10.16279 -9.91501 -9.74534 -9.52747 -9.24948 -8.93941 -7.03125 -5.84390 -3.13575 -0.17054 1.96050 2.37256 2.78678 3.33815 3.38166 3.43961 3.46245 3.80287 4.10778 4.26819 4.42233 4.47807 4.52687 4.55410 4.77528 4.80784 4.85292 5.08433 5.20537 5.25795 5.32700 5.38911 5.39468 5.47349 5.61085 5.64146 5.66723 5.73155 5.81687 5.99384 6.00580 6.07985 6.18289 6.23824 6.29519 6.40108 6.48583 6.70848 7.00982 7.13137 7.63882 7.82120 8.34069 9.45370 10.02863 10.36819 11.37980 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.002453 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.266377 B =11411.243225 C =11755.212553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.160 3.840 3 C -0.158 4.158 4 N -1.112 6.112 5 S 2.607 3.393 6 C -0.677 4.677 7 O -0.956 6.956 8 O -0.949 6.949 9 C 0.489 3.511 10 O -0.522 6.522 11 N -0.723 5.723 12 C 0.126 3.874 13 C -0.131 4.131 14 C -0.141 4.141 15 C 0.165 3.835 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.160 4.160 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.423 0.577 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.401 0.599 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.054 0.946 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 17.238 -16.702 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.068 3.932 3 C -0.217 4.217 4 N -0.873 5.873 5 S 2.699 3.301 6 C -0.827 4.827 7 O -0.947 6.947 8 O -0.939 6.939 9 C 0.272 3.728 10 O -0.396 6.396 11 N -0.376 5.376 12 C 0.003 3.997 13 C -0.150 4.150 14 C -0.181 4.181 15 C 0.053 3.947 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.202 4.202 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.258 0.742 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.649 17.941 -16.616 24.891 hybrid contribution -0.916 -1.652 0.416 1.934 sum 3.733 16.289 -16.200 23.275 Atomic orbital electron populations 1.22007 0.90179 1.03865 1.04410 1.20527 0.98089 0.93221 0.81339 1.22358 1.03512 0.91954 1.03859 1.55847 1.27427 1.68018 1.36010 1.04982 0.73766 0.75478 0.75867 1.30828 1.14867 1.15504 1.21508 1.93635 1.85085 1.71539 1.44414 1.93644 1.83030 1.30755 1.86438 1.21092 0.78548 0.82917 0.90201 1.90768 1.48461 1.66013 1.34381 1.46327 1.66797 1.06808 1.17628 1.21573 0.99748 0.91351 0.87038 1.22729 1.00692 0.91797 0.99795 1.23429 0.99304 0.97953 0.97417 1.21513 0.91367 0.91359 0.90433 1.42417 1.67556 1.19302 1.05813 1.19337 1.29694 0.93946 0.94645 0.91043 1.24778 1.01714 0.98805 0.95582 1.69666 1.50987 1.38194 0.99086 0.86121 0.78871 0.83929 0.77268 1.20512 1.21814 1.21825 1.24003 0.95400 0.99944 1.00811 0.90028 0.90152 0.91039 0.90096 0.90198 0.90257 0.74171 0.84549 0.84911 0.85171 0.76415 0.90693 0.91334 0.89409 0.90016 0.91918 0.90718 0.78063 0.93450 0.92695 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.57 37.16 0.32 -0.50 16 2 C 0.16 1.18 1.08 -132.97 -0.14 1.03 16 3 C -0.16 -1.34 6.67 37.16 0.25 -1.09 16 4 N -1.11 -6.51 4.71 -0.40 0.00 -6.51 16 5 S 2.61 20.31 5.97 -107.50 -0.64 19.67 16 6 C -0.68 -4.40 8.95 101.05 0.90 -3.49 16 7 O -0.96 -10.20 18.08 -57.54 -1.04 -11.24 16 8 O -0.95 -10.15 14.69 -57.54 -0.85 -10.99 16 9 C 0.49 4.77 4.09 -10.99 -0.04 4.73 16 10 O -0.52 -7.03 16.23 5.56 0.09 -6.94 16 11 N -0.72 -6.16 3.08 -60.29 -0.19 -6.35 16 12 C 0.13 1.35 5.37 -4.04 -0.02 1.33 16 13 C -0.13 -1.49 3.76 -89.67 -0.34 -1.83 16 14 C -0.14 -2.04 7.39 -25.92 -0.19 -2.23 16 15 C 0.17 2.99 4.47 -67.13 -0.30 2.69 16 16 N -0.71 -17.11 5.41 -52.64 -0.28 -17.40 16 17 C -0.25 -6.60 9.97 -15.05 -0.15 -6.75 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.16 -2.39 7.45 -25.78 -0.19 -2.58 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.79 6.26 -51.93 -0.33 0.47 16 30 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.42 1.52 8.58 -34.47 -0.30 1.23 16 33 H 0.14 0.76 6.36 -51.92 -0.33 0.43 16 34 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.13 0.99 6.36 -51.92 -0.33 0.66 16 36 H 0.40 2.51 7.41 -40.82 -0.30 2.20 16 37 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 43 H 0.39 9.89 7.91 -40.82 -0.32 9.57 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.33 7.90 -51.93 -0.41 0.91 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -35.58 377.62 -8.86 -44.43 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.33 Total: 8.80 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 0.00 Total: -9.15 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.25 Total: -57.13 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.80 Total: -29.17 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 20.31 SS G_CDS: -0.64 Total: 19.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.58 -8.86 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100742291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.215 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds