Wall clock time and date at job start Tue Mar 31 2020 17:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 N 1.46503 * 109.46904 * 240.00442 * 2 1 3 5 5 S 1.65601 * 119.99996 * 171.49421 * 4 2 1 6 6 C 1.81400 * 104.45010 * 61.55664 * 5 4 2 7 7 O 1.42099 * 104.28005 * 177.62912 * 5 4 2 8 8 O 1.42097 * 104.27667 * 305.48651 * 5 4 2 9 9 C 1.50699 * 109.47316 * 120.00374 * 2 1 3 10 10 O 1.21279 * 120.00019 * 265.00192 * 9 2 1 11 11 N 1.34773 * 119.99867 * 84.99687 * 9 2 1 12 12 C 1.46498 * 119.99934 * 180.02562 * 11 9 2 13 13 C 1.53001 * 109.47543 * 180.02562 * 12 11 9 14 14 C 1.53780 * 113.61728 * 175.00197 * 13 12 11 15 15 C 1.53774 * 87.07968 * 139.98048 * 14 13 12 16 16 N 1.46497 * 113.61368 * 219.93075 * 15 14 13 17 17 C 1.36942 * 120.00222 * 203.47004 * 16 15 14 18 18 H 1.07998 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99608 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47332 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46715 * 120.00202 * 21 19 17 24 24 H 1.48495 * 109.46909 * 239.99671 * 21 19 17 25 25 C 1.53777 * 87.17560 * 334.52671 * 15 14 13 26 26 H 1.09000 * 109.47089 * 300.00152 * 1 2 3 27 27 H 1.09000 * 109.47256 * 59.99808 * 1 2 3 28 28 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47029 * 172.07256 * 3 2 1 30 30 H 1.08996 * 109.47319 * 292.07760 * 3 2 1 31 31 H 1.09004 * 109.47088 * 52.07984 * 3 2 1 32 32 H 0.96999 * 120.00040 * 351.49206 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.07247 * 6 5 4 34 34 H 1.08997 * 109.47313 * 174.07555 * 6 5 4 35 35 H 1.09004 * 109.47110 * 294.07352 * 6 5 4 36 36 H 0.97000 * 120.00288 * 0.02562 * 11 9 2 37 37 H 1.09003 * 109.47110 * 60.00074 * 12 11 9 38 38 H 1.09001 * 109.47128 * 300.00094 * 12 11 9 39 39 H 1.09001 * 112.84782 * 43.80034 * 13 12 11 40 40 H 1.09001 * 113.61312 * 25.42988 * 14 13 12 41 41 H 1.08998 * 113.60863 * 254.53090 * 14 13 12 42 42 H 1.09000 * 113.61598 * 89.11898 * 15 14 13 43 43 H 0.97002 * 119.99928 * 23.47595 * 16 15 14 44 44 H 0.96996 * 119.99862 * 180.02562 * 20 19 17 45 45 H 1.08996 * 113.61690 * 140.02909 * 25 15 14 46 46 H 1.09003 * 113.61339 * 270.92327 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 3.6315 -0.6608 -1.5690 6 6 4.4365 -1.4735 -0.1611 7 8 3.7366 -1.4650 -2.7358 8 8 3.9585 0.7217 -1.6003 9 6 2.0324 -0.7105 1.2304 10 8 2.3208 -0.0750 2.2223 11 7 2.1610 -2.0521 1.2285 12 6 2.6489 -2.7428 2.4248 13 6 2.7010 -4.2486 2.1587 14 6 3.3162 -5.0572 3.3131 15 6 2.2281 -6.1115 3.0501 16 7 1.6664 -6.6925 4.2720 17 6 1.0759 -7.9275 4.2342 18 1 1.0246 -8.4733 3.3037 19 6 0.5432 -8.4778 5.3920 20 7 0.6053 -7.8124 6.5259 21 14 -0.2617 -10.1627 5.3406 22 1 -0.2024 -10.6977 3.9566 23 1 0.4575 -11.0830 6.2577 24 1 -1.6794 -10.0472 5.7669 25 6 1.3765 -4.9749 2.4604 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1208 1.4458 0.1417 30 1 1.7970 1.9138 -0.9523 31 1 1.5656 1.9956 0.8107 32 1 1.3966 -1.1652 -1.7700 33 1 3.9853 -2.4527 -0.0003 34 1 5.4996 -1.5931 -0.3698 35 1 4.3081 -0.8631 0.7328 36 1 1.9306 -2.5603 0.4351 37 1 1.9760 -2.5440 3.2589 38 1 3.6480 -2.3828 2.6702 39 1 3.1212 -4.4916 1.1828 40 1 3.2265 -4.5699 4.2839 41 1 4.3263 -5.4117 3.1080 42 1 2.5180 -6.8649 2.3177 43 1 1.7128 -6.2025 5.1078 44 1 0.2334 -8.1971 7.3349 45 1 0.8216 -5.2630 1.5677 46 1 0.7573 -4.4652 3.1986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100742291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:00 Heat of formation + Delta-G solvation = -97.206640 kcal Electronic energy + Delta-G solvation = -27827.590208 eV Core-core repulsion = 23879.676708 eV Total energy + Delta-G solvation = -3947.913500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54676 -39.93879 -38.30796 -37.40845 -37.01018 -36.17199 -35.05038 -32.18489 -31.63184 -30.35328 -28.94104 -28.23417 -26.44289 -25.94978 -24.20245 -22.40103 -21.41411 -20.65298 -20.18493 -19.11156 -18.78639 -18.72879 -17.54229 -17.14100 -16.81234 -16.57470 -16.53809 -16.06709 -15.69466 -15.44774 -15.14009 -14.88543 -14.49254 -14.43474 -14.09636 -13.93619 -13.67377 -13.43368 -13.29599 -13.22873 -13.21408 -13.04538 -13.00043 -12.90919 -12.84597 -12.69044 -12.64432 -12.19690 -12.13541 -12.05714 -11.86792 -11.67770 -11.55855 -11.43398 -11.06654 -10.82358 -10.38120 -10.10084 -8.96518 -7.94568 -5.22352 -0.78211 1.26268 1.47843 1.48048 1.58034 1.71760 2.01691 2.56861 2.73814 3.18756 3.37598 3.46447 3.66342 3.73521 3.74912 3.86787 3.93274 3.96628 4.01940 4.22664 4.28038 4.36339 4.42586 4.58126 4.72694 4.77131 4.80315 4.81763 4.87910 4.99336 5.01417 5.06438 5.08643 5.20547 5.23993 5.31241 5.37991 5.43072 5.53708 5.74655 6.02304 6.28364 6.41510 7.08465 7.33930 8.13052 8.33701 9.29168 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.002453 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.266377 B =11411.243225 C =11755.212553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.169 3.831 3 C -0.162 4.162 4 N -1.100 6.100 5 S 2.620 3.380 6 C -0.672 4.672 7 O -0.984 6.984 8 O -0.981 6.981 9 C 0.491 3.509 10 O -0.561 6.561 11 N -0.711 5.711 12 C 0.131 3.869 13 C -0.099 4.099 14 C -0.136 4.136 15 C 0.139 3.861 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.296 1.296 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.436 0.564 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.415 0.585 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 16.947 -19.049 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 C -0.220 4.220 4 N -0.863 5.863 5 S 2.715 3.285 6 C -0.824 4.824 7 O -0.974 6.974 8 O -0.971 6.971 9 C 0.275 3.725 10 O -0.438 6.438 11 N -0.364 5.364 12 C 0.008 3.992 13 C -0.118 4.118 14 C -0.176 4.176 15 C 0.030 3.970 16 N -0.368 5.368 17 C -0.371 4.371 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.193 4.193 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.274 0.726 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.140 0.860 36 H 0.253 0.747 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.733 17.652 -19.085 26.424 hybrid contribution -0.889 -1.522 1.111 2.083 sum 3.844 16.130 -17.974 24.455 Atomic orbital electron populations 1.22062 0.88464 1.04866 1.05086 1.20384 0.99159 0.92205 0.80564 1.22380 1.02601 0.92877 1.04191 1.55561 1.27084 1.67969 1.35672 1.04391 0.73923 0.74500 0.75698 1.30780 1.16226 1.15665 1.19771 1.93600 1.85629 1.71880 1.46298 1.93609 1.83663 1.32798 1.87056 1.21493 0.77640 0.82967 0.90386 1.90758 1.50166 1.66857 1.36047 1.46168 1.66230 1.06581 1.17466 1.21358 0.99701 0.90987 0.87198 1.22576 0.97450 0.91523 1.00243 1.23307 0.99154 0.96963 0.98144 1.21998 0.93647 0.92596 0.88776 1.42648 1.68190 1.18736 1.07261 1.19754 1.27985 0.94760 0.94592 0.90320 1.25568 1.03576 1.02466 0.95540 1.69821 1.53023 1.39886 0.99574 0.85109 0.77303 0.79857 0.77731 1.18764 1.22323 1.22328 1.23763 0.96505 0.98602 1.00448 0.90668 0.88252 0.89892 0.91585 0.89480 0.90398 0.72587 0.83080 0.82991 0.85984 0.74698 0.92962 0.90656 0.85725 0.91444 0.90282 0.90331 0.79663 0.94151 0.91259 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.57 71.98 0.62 -0.67 16 2 C 0.17 2.17 1.08 2.86 0.00 2.17 16 3 C -0.16 -2.59 6.67 71.98 0.48 -2.11 16 4 N -1.10 -10.23 4.71 -155.18 -0.73 -10.96 16 5 S 2.62 36.11 5.97 -56.49 -0.34 35.77 16 6 C -0.67 -6.90 8.95 113.37 1.02 -5.88 16 7 O -0.98 -19.10 18.08 -127.65 -2.31 -21.41 16 8 O -0.98 -20.16 14.69 -127.65 -1.88 -22.04 16 9 C 0.49 8.76 4.09 87.66 0.36 9.11 16 10 O -0.56 -14.77 16.23 -3.03 -0.05 -14.82 16 11 N -0.71 -10.23 3.08 -463.07 -1.43 -11.66 16 12 C 0.13 2.52 5.37 86.38 0.46 2.98 16 13 C -0.10 -1.94 3.76 -10.18 -0.04 -1.98 16 14 C -0.14 -3.68 7.39 31.12 0.23 -3.45 16 15 C 0.14 4.85 4.47 45.51 0.20 5.05 16 16 N -0.73 -35.30 5.41 -320.46 -1.73 -37.03 16 17 C -0.24 -12.84 9.97 84.03 0.84 -12.00 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 20 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 21 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 C -0.15 -4.25 7.45 31.21 0.23 -4.02 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.27 6.26 -2.39 -0.01 1.26 16 30 H 0.09 1.25 8.07 -2.39 -0.02 1.23 16 31 H 0.08 1.25 8.10 -2.38 -0.02 1.23 16 32 H 0.44 1.82 8.58 -96.75 -0.83 0.99 16 33 H 0.15 1.07 6.36 -2.39 -0.02 1.06 16 34 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 1.60 6.36 -2.39 -0.02 1.59 16 36 H 0.42 3.60 7.41 -92.71 -0.69 2.91 16 37 H 0.05 1.29 7.85 -2.39 -0.02 1.27 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 43 H 0.37 19.62 7.91 -92.71 -0.73 18.89 16 44 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 1.87 7.90 -2.39 -0.02 1.85 16 Total: -1.00 -78.61 377.62 -2.52 -81.13 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -1.24 Total: 27.28 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.87 Total: -14.83 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -3.61 Total: -118.40 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -4.23 Total: -58.27 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 36.11 SS G_CDS: -0.34 Total: 35.77 kcal Total: -78.61 -2.52 -81.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100742291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.076 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds