Wall clock time and date at job start Tue Mar 31 2020 17:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52992 * 109.47065 * 2 1 4 4 C 1.52999 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47562 * 54.99977 * 4 3 2 6 6 C 1.50703 * 109.47185 * 174.99844 * 4 3 2 7 7 O 1.21286 * 119.99764 * 35.00323 * 6 4 3 8 8 N 1.34771 * 120.00300 * 214.99665 * 6 4 3 9 9 C 1.46504 * 120.00375 * 179.97438 * 8 6 4 10 10 C 1.53038 * 109.46351 * 275.07584 * 9 8 6 11 11 C 1.53190 * 109.31268 * 178.61350 * 10 9 8 12 12 N 1.46921 * 108.77651 * 54.63346 * 11 10 9 13 13 C 1.36939 * 120.63292 * 126.41644 * 12 11 10 14 14 H 1.08003 * 119.99420 * 331.82283 * 13 12 11 15 15 C 1.38809 * 120.00155 * 151.82352 * 13 12 11 16 16 N 1.31621 * 120.00220 * 343.07163 * 15 13 12 17 17 Si 1.86801 * 119.99813 * 163.06717 * 15 13 12 18 18 H 1.48496 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47032 * 120.00069 * 17 15 13 20 20 H 1.48498 * 109.47050 * 239.99962 * 17 15 13 21 21 C 1.46931 * 118.73788 * 306.38727 * 12 11 10 22 22 C 1.53038 * 109.46140 * 155.00139 * 9 8 6 23 23 S 1.81402 * 109.47214 * 295.00017 * 4 3 2 24 24 N 1.65607 * 104.44584 * 300.00054 * 23 4 3 25 25 O 1.42095 * 110.54053 * 51.62263 * 23 4 3 26 26 O 1.42100 * 110.54279 * 188.37930 * 23 4 3 27 27 H 1.08998 * 109.47021 * 59.99703 * 1 2 3 28 28 H 1.08990 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46612 * 299.99802 * 1 2 3 30 30 H 1.09002 * 109.46612 * 240.00198 * 2 1 3 31 31 H 1.08998 * 109.47021 * 120.00297 * 2 1 3 32 32 H 1.09000 * 109.47242 * 60.00039 * 3 2 1 33 33 H 1.08998 * 109.47443 * 300.00038 * 3 2 1 34 34 H 0.97000 * 119.99712 * 0.02562 * 8 6 4 35 35 H 1.09006 * 109.45189 * 35.03557 * 9 8 6 36 36 H 1.08996 * 109.49204 * 298.56380 * 10 9 8 37 37 H 1.08999 * 109.49975 * 58.65856 * 10 9 8 38 38 H 1.09002 * 109.58180 * 294.84151 * 11 10 9 39 39 H 1.09000 * 109.70084 * 174.49149 * 11 10 9 40 40 H 0.96995 * 120.00178 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.59163 * 293.82686 * 21 12 11 42 42 H 1.09003 * 109.70343 * 173.46458 * 21 12 11 43 43 H 1.09002 * 109.49873 * 301.34406 * 22 9 8 44 44 H 1.08999 * 109.49639 * 61.40516 * 22 9 8 45 45 H 0.97001 * 120.00202 * 359.97438 * 24 23 4 46 46 H 0.97000 * 119.99706 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8426 6 6 4.0724 2.8578 -0.1245 7 8 3.4636 3.7655 0.4013 8 7 5.1982 3.1149 -0.8194 9 6 5.6863 4.4910 -0.9403 10 6 4.9800 5.1817 -2.1091 11 6 5.4673 6.6305 -2.2108 12 7 6.9334 6.6306 -2.3065 13 6 7.5657 7.2838 -3.3307 14 1 7.0683 7.4065 -4.2814 15 6 8.8458 7.7881 -3.1468 16 7 9.3236 7.9432 -1.9302 17 14 9.8904 8.2467 -4.6260 18 1 9.1281 7.9799 -5.8721 19 1 10.2383 9.6888 -4.5583 20 1 11.1349 7.4366 -4.6233 21 6 7.7083 5.9171 -1.2822 22 6 7.1959 4.4764 -1.1910 23 16 4.1754 0.7193 1.5490 24 7 3.5576 1.7003 2.7316 25 8 3.5628 -0.5411 1.7838 26 8 5.5828 0.8818 1.6588 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 5.6849 2.3890 -1.2401 35 1 5.4766 5.0329 -0.0180 36 1 5.2093 4.6549 -3.0353 37 1 3.9031 5.1711 -1.9410 38 1 5.1590 7.1828 -1.3231 39 1 5.0431 7.0994 -3.0986 40 1 10.2180 8.2959 -1.8017 41 1 7.5828 6.4113 -0.3188 42 1 8.7634 5.9130 -1.5561 43 1 7.6962 3.9636 -0.3694 44 1 7.4045 3.9557 -2.1256 45 1 3.0068 2.4618 2.4915 46 1 3.7473 1.5138 3.6645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228448385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:51 Heat of formation + Delta-G solvation = -127.019402 kcal Electronic energy + Delta-G solvation = -27997.758166 eV Core-core repulsion = 24048.551888 eV Total energy + Delta-G solvation = -3949.206279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30549 -39.13760 -38.45976 -37.19992 -36.52493 -36.04373 -34.09980 -33.97660 -32.26297 -31.65200 -30.87620 -27.19151 -25.83953 -23.99971 -23.62254 -22.38399 -21.78528 -21.12738 -20.51486 -19.18076 -19.05623 -18.51939 -17.79088 -17.43599 -16.92544 -16.75987 -16.66094 -15.85440 -15.69653 -15.37501 -15.24316 -15.12113 -14.79751 -14.74991 -14.30765 -14.11144 -13.77300 -13.50703 -13.30831 -13.29558 -13.22754 -13.15651 -13.03807 -12.64646 -12.54451 -12.48073 -12.25422 -12.03482 -11.97035 -11.91810 -11.87826 -11.59438 -11.41693 -11.34622 -11.22629 -10.96154 -10.57330 -10.12835 -8.71514 -7.88496 -5.34195 -1.05088 1.35314 1.47124 1.49406 1.59691 1.63355 1.95445 2.43335 2.51398 2.91708 3.26534 3.32568 3.64832 3.67239 3.83829 3.87622 4.02134 4.13396 4.22073 4.30972 4.45036 4.57669 4.64727 4.71146 4.75958 4.83655 4.90032 4.96969 4.98822 5.04406 5.14676 5.16854 5.26909 5.29478 5.36357 5.40790 5.46841 5.52634 5.64329 5.70344 6.23723 6.33958 6.39092 6.97358 7.13894 7.83703 8.36007 9.18711 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.002725 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.608084 B =10271.876497 C =10834.166207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.169 4.169 3 C -0.088 4.088 4 C -0.602 4.602 5 H 0.196 0.804 6 C 0.528 3.472 7 O -0.547 6.547 8 N -0.702 5.702 9 C 0.159 3.841 10 C -0.123 4.123 11 C 0.144 3.856 12 N -0.609 5.609 13 C -0.262 4.262 14 H 0.068 0.932 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.289 1.289 21 C 0.179 3.821 22 C -0.135 4.135 23 S 2.642 3.358 24 N -1.241 6.241 25 O -0.961 6.961 26 O -0.987 6.987 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.010 0.990 39 H 0.059 0.941 40 H 0.250 0.750 41 H -0.004 1.004 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.424 0.576 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.945 -18.379 4.854 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C -0.126 4.126 4 C -0.713 4.713 5 H 0.213 0.787 6 C 0.312 3.688 7 O -0.425 6.425 8 N -0.352 5.352 9 C 0.054 3.946 10 C -0.163 4.163 11 C 0.018 3.982 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.086 0.914 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.796 3.204 18 H -0.190 1.190 19 H -0.222 1.222 20 H -0.216 1.216 21 C 0.053 3.947 22 C -0.174 4.174 23 S 2.732 3.268 24 N -0.920 5.920 25 O -0.950 6.950 26 O -0.976 6.976 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.014 0.986 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.590 -18.561 5.234 24.799 hybrid contribution 0.699 1.114 -0.807 1.543 sum -14.892 -17.447 4.426 23.361 Atomic orbital electron populations 1.21727 0.94358 1.02459 1.02318 1.22258 0.98019 0.94865 1.05544 1.21377 0.85505 0.99582 1.06186 1.30596 1.10351 1.04807 1.25568 0.78722 1.19553 0.80951 0.89041 0.79300 1.90740 1.57050 1.46561 1.48141 1.46130 1.25801 1.10427 1.52878 1.20790 0.93757 0.81387 0.98630 1.22182 0.99276 0.96808 0.98081 1.20981 0.84177 0.94483 0.98588 1.44361 1.00829 1.59123 1.28991 1.19544 0.98888 1.29292 0.91464 0.91394 1.25817 1.00919 0.99262 0.98571 1.70183 1.17370 1.49477 1.21131 0.85205 0.78629 0.76846 0.79729 1.19000 1.22153 1.21576 1.20539 0.96341 0.88099 0.89729 1.22307 0.93844 0.99171 1.02087 1.03916 0.73417 0.73868 0.75636 1.52830 1.70640 1.46584 1.21963 1.93550 1.77069 1.41124 1.83223 1.93620 1.32474 1.86429 1.85102 0.92244 0.91846 0.92325 0.90118 0.88579 0.89376 0.88828 0.74833 0.91381 0.91390 0.91302 0.97206 0.92293 0.94040 0.98599 0.92001 0.90776 0.90976 0.74602 0.74012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.99 0.71 -0.95 16 2 C -0.17 -2.07 5.65 30.60 0.17 -1.90 16 3 C -0.09 -1.14 4.21 30.59 0.13 -1.02 16 4 C -0.60 -8.82 2.75 29.85 0.08 -8.74 16 5 H 0.20 1.42 8.11 -2.39 -0.02 1.40 16 6 C 0.53 11.81 6.55 87.66 0.57 12.39 16 7 O -0.55 -15.15 15.17 -3.05 -0.05 -15.20 16 8 N -0.70 -16.62 5.08 -442.40 -2.25 -18.86 16 9 C 0.16 5.04 2.41 45.02 0.11 5.14 16 10 C -0.12 -4.04 5.65 30.67 0.17 -3.86 16 11 C 0.14 5.93 6.52 86.36 0.56 6.49 16 12 N -0.61 -30.07 2.99 -699.10 -2.09 -32.16 16 13 C -0.26 -14.14 9.58 84.03 0.81 -13.34 16 14 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 15 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 16 N -0.94 -54.89 11.19 21.65 0.24 -54.65 16 17 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 C 0.18 8.46 5.30 86.36 0.46 8.92 16 22 C -0.13 -4.73 5.55 30.67 0.17 -4.56 16 23 S 2.64 47.63 5.46 -56.49 -0.31 47.32 16 24 N -1.24 -18.82 9.13 37.02 0.34 -18.48 16 25 O -0.96 -19.73 14.89 -127.65 -1.90 -21.63 16 26 O -0.99 -25.52 18.01 -127.65 -2.30 -27.82 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.43 4.90 -2.39 -0.01 1.42 16 32 H 0.09 1.10 6.96 -2.39 -0.02 1.08 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 7.46 8.58 -92.71 -0.80 6.66 16 35 H 0.07 2.46 7.58 -2.38 -0.02 2.44 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.42 6.02 6.95 -96.74 -0.67 5.35 16 46 H 0.43 5.09 8.96 -96.74 -0.87 4.22 16 Total: -1.00 -73.76 373.64 -3.24 -77.00 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -1.32 Total: 22.05 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.37 Total: -3.78 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -3.76 Total: -124.16 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -4.25 Total: -64.65 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 47.63 SS G_CDS: -0.31 Total: 47.32 kcal Total: -73.76 -3.24 -77.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228448385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.021 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds