Wall clock time and date at job start Tue Mar 31 2020 17:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 C 1.50708 * 109.47324 * 239.99907 * 2 1 3 5 5 H 1.07993 * 119.99751 * 239.99995 * 4 2 1 6 6 C 1.37878 * 119.99796 * 60.00135 * 4 2 1 7 7 N 1.31518 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99858 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47193 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47144 * 119.99807 * 8 6 4 11 11 H 1.48496 * 109.47099 * 239.99718 * 8 6 4 12 12 C 1.53003 * 109.47005 * 120.00071 * 2 1 3 13 13 N 1.46495 * 109.47248 * 299.99906 * 12 2 1 14 14 C 1.34770 * 120.00408 * 179.97438 * 13 12 2 15 15 O 1.21591 * 120.00044 * 355.01142 * 14 13 12 16 16 N 1.34775 * 120.00304 * 175.00527 * 14 13 12 17 17 C 1.46962 * 120.59314 * 4.93630 * 16 14 13 18 18 C 1.53807 * 108.40191 * 124.75683 * 17 16 14 19 19 N 1.46970 * 108.57778 * 49.63537 * 18 17 16 20 20 S 1.65602 * 120.59015 * 124.67500 * 19 18 17 21 21 C 1.81401 * 104.44676 * 269.97501 * 20 19 18 22 22 O 1.42097 * 104.28145 * 26.04647 * 20 19 18 23 23 O 1.42101 * 104.27455 * 153.90753 * 20 19 18 24 24 C 1.46961 * 118.81327 * 304.64784 * 19 18 17 25 25 C 1.46970 * 120.59431 * 185.21314 * 16 14 13 26 26 H 1.08995 * 109.47349 * 300.00060 * 1 2 3 27 27 H 1.08999 * 109.46883 * 60.00574 * 1 2 3 28 28 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47572 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47190 * 300.00116 * 3 2 1 31 31 H 1.09004 * 109.46795 * 59.99419 * 3 2 1 32 32 H 0.96999 * 120.00108 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47052 * 60.00193 * 12 2 1 34 34 H 1.09005 * 109.46749 * 179.97438 * 12 2 1 35 35 H 0.97005 * 119.99608 * 0.02562 * 13 12 2 36 36 H 1.09001 * 109.60690 * 244.53860 * 17 16 14 37 37 H 1.09001 * 109.61175 * 5.04587 * 17 16 14 38 38 H 1.08998 * 109.74454 * 289.85073 * 18 17 16 39 39 H 1.08999 * 109.54228 * 169.30312 * 18 17 16 40 40 H 1.08997 * 109.47208 * 60.00220 * 21 20 19 41 41 H 1.09002 * 109.47051 * 180.02562 * 21 20 19 42 42 H 1.09008 * 109.47269 * 300.00338 * 21 20 19 43 43 H 1.09006 * 109.60971 * 295.48315 * 24 19 18 44 44 H 1.08997 * 109.61104 * 174.97338 * 24 19 18 45 45 H 1.08997 * 109.60801 * 354.94787 * 25 16 14 46 46 H 1.08998 * 109.60660 * 115.46319 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1466 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.4985 -1.5302 3.7828 16 7 1.5129 0.1993 4.7681 17 6 0.6698 1.3975 4.6531 18 6 -0.5692 1.2068 5.5443 19 7 -0.1250 0.7787 6.8782 20 16 -0.5723 1.6273 8.2281 21 6 0.7396 2.8618 8.4419 22 8 -1.7925 2.2553 7.8590 23 8 -0.5297 0.6678 9.2753 24 6 0.7226 -0.4164 6.9928 25 6 1.9570 -0.2289 6.1020 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7082 1.1609 -3.4844 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 0.9937 0.7578 2.3564 36 1 1.2302 2.2721 4.9834 37 1 0.3599 1.5286 3.6163 38 1 -1.2191 0.4453 5.1133 39 1 -1.1097 2.1500 5.6240 40 1 0.7871 3.4982 7.5583 41 1 0.5244 3.4724 9.3188 42 1 1.6957 2.3561 8.5773 43 1 0.1646 -1.2935 6.6648 44 1 1.0353 -0.5451 8.0290 45 1 2.4974 -1.1721 6.0224 46 1 2.6069 0.5327 6.5331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414662938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:57 Heat of formation + Delta-G solvation = -81.245191 kcal Electronic energy + Delta-G solvation = -28036.728082 eV Core-core repulsion = 24089.506722 eV Total energy + Delta-G solvation = -3947.221360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24484 -37.91976 -37.54006 -36.38905 -36.28797 -34.06569 -33.28002 -31.65573 -30.67560 -29.89869 -27.35736 -25.76044 -25.59656 -24.85313 -23.99897 -22.20742 -20.11219 -19.17537 -18.86900 -18.41038 -17.20247 -16.72913 -16.59322 -16.05552 -15.79478 -15.53645 -15.04377 -14.78499 -14.55798 -14.24745 -14.01460 -13.74525 -13.68039 -13.59471 -12.96039 -12.91499 -12.80508 -12.63980 -12.45942 -12.34635 -12.15599 -11.76779 -11.66390 -11.51426 -11.42408 -11.22656 -11.17862 -10.90434 -10.67501 -10.42255 -10.22587 -9.85215 -9.76005 -9.66482 -9.33709 -8.81219 -8.69325 -8.42699 -8.18247 -6.04604 -4.14351 -0.15629 2.15107 2.83777 3.25838 3.34689 3.39506 3.45926 3.52117 3.70876 4.05517 4.25515 4.38820 4.43358 4.47464 4.61987 4.86282 4.86511 4.93623 5.10260 5.22440 5.22560 5.28589 5.49092 5.57686 5.61167 5.80283 6.09942 6.16588 6.33052 6.44310 6.47425 6.75531 6.77861 6.86515 6.99724 7.03732 7.16426 7.34773 7.52789 7.67722 7.98255 8.09322 8.30903 8.37731 8.85261 8.93964 9.51679 10.96919 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.002536 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.660033 B =11038.585951 C =11519.580600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.149 3.851 13 N -0.732 5.732 14 C 0.702 3.298 15 O -0.595 6.595 16 N -0.634 5.634 17 C 0.096 3.904 18 C 0.106 3.894 19 N -0.998 5.998 20 S 2.610 3.390 21 C -0.674 4.674 22 O -0.954 6.954 23 O -0.955 6.955 24 C 0.106 3.894 25 C 0.115 3.885 26 H 0.004 0.996 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.004 0.996 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 6.461 20.484 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.026 3.974 13 N -0.389 5.389 14 C 0.404 3.596 15 O -0.473 6.473 16 N -0.373 5.373 17 C -0.030 4.030 18 C -0.020 4.020 19 N -0.836 5.836 20 S 2.703 3.297 21 C -0.823 4.823 22 O -0.944 6.944 23 O -0.945 6.945 24 C -0.020 4.020 25 C -0.010 4.010 26 H 0.023 0.977 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.230 0.770 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.789 5.647 20.885 21.709 hybrid contribution 0.689 0.399 -1.130 1.382 sum -1.099 6.046 19.756 20.690 Atomic orbital electron populations 1.21817 0.97749 0.99206 0.99922 1.18370 0.92803 0.92745 0.90577 1.21817 0.98572 0.98369 0.99916 1.21021 1.31395 1.12086 0.89827 0.92344 1.24878 0.94857 0.94924 0.98869 1.69809 1.36718 1.22825 1.23137 0.86515 0.78641 0.79759 0.82959 1.19746 1.21062 1.21091 1.21607 0.97783 0.95592 0.82387 1.45688 1.55434 1.33136 1.04607 1.15974 0.79934 0.83078 0.80650 1.90880 1.47063 1.23838 1.85569 1.47116 1.55124 1.29349 1.05733 1.22109 0.91658 0.88246 1.01000 1.21952 0.96092 1.02097 0.81876 1.57669 1.65960 1.39037 1.20917 1.04951 0.76052 0.75442 0.73255 1.30598 1.20817 1.19292 1.11626 1.93616 1.40339 1.78205 1.82270 1.93611 1.87271 1.58203 1.55429 1.21915 0.91606 0.87444 1.01040 1.21795 0.95399 1.02374 0.81423 0.97712 0.89601 0.95401 0.95453 0.89606 0.97730 0.93060 0.92837 0.93000 0.76982 0.90985 0.88867 0.89920 0.87902 0.85289 0.85516 0.85335 0.90080 0.88074 0.87501 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.50 -12.97 8.01 -34.44 -0.28 -13.25 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.15 9.35 55.43 0.52 -22.63 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.15 3.10 4.51 -4.04 -0.02 3.08 16 13 N -0.73 -12.57 4.87 -65.23 -0.32 -12.89 16 14 C 0.70 11.82 8.29 -86.93 -0.72 11.10 16 15 O -0.59 -12.25 15.76 5.29 0.08 -12.16 16 16 N -0.63 -7.64 2.94 -177.94 -0.52 -8.17 16 17 C 0.10 0.84 6.59 -3.37 -0.02 0.82 16 18 C 0.11 0.85 6.50 -3.37 -0.02 0.83 16 19 N -1.00 -7.88 3.20 -113.00 -0.36 -8.24 16 20 S 2.61 19.91 6.06 -107.50 -0.65 19.26 16 21 C -0.67 -2.66 10.99 101.05 1.11 -1.55 16 22 O -0.95 -10.37 16.70 -57.54 -0.96 -11.33 16 23 O -0.95 -10.29 16.70 -57.54 -0.96 -11.25 16 24 C 0.11 0.87 6.49 -3.60 -0.02 0.85 16 25 C 0.12 1.11 6.60 -3.59 -0.02 1.08 16 26 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 31 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 32 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.39 5.98 3.63 -40.82 -0.15 5.84 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.85 5.61 -51.93 -0.29 0.56 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.66 7.06 -51.93 -0.37 0.29 16 40 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.66 7.06 -51.93 -0.37 0.29 16 45 H 0.11 1.20 6.99 -51.93 -0.36 0.84 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -33.99 368.06 -9.28 -43.27 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.07 Total: 2.44 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.43 Total: 0.73 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.68 Total: -51.92 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.84 Total: -34.74 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 19.91 SS G_CDS: -0.65 Total: 19.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.99 -9.28 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414662938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.977 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds