Wall clock time and date at job start Tue Mar 31 2020 17:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 C 1.50708 * 109.47324 * 239.99907 * 2 1 3 5 5 H 1.07993 * 119.99751 * 239.99995 * 4 2 1 6 6 C 1.37878 * 119.99796 * 60.00135 * 4 2 1 7 7 N 1.31518 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99858 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47193 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47144 * 119.99807 * 8 6 4 11 11 H 1.48496 * 109.47099 * 239.99718 * 8 6 4 12 12 C 1.53003 * 109.47005 * 120.00071 * 2 1 3 13 13 N 1.46495 * 109.47248 * 299.99906 * 12 2 1 14 14 C 1.34770 * 120.00408 * 179.97438 * 13 12 2 15 15 O 1.21591 * 120.00044 * 355.01142 * 14 13 12 16 16 N 1.34775 * 120.00304 * 175.00527 * 14 13 12 17 17 C 1.46962 * 120.59314 * 4.93630 * 16 14 13 18 18 C 1.53807 * 108.40191 * 124.75683 * 17 16 14 19 19 N 1.46970 * 108.57778 * 49.63537 * 18 17 16 20 20 S 1.65602 * 120.59015 * 124.67500 * 19 18 17 21 21 C 1.81401 * 104.44676 * 269.97501 * 20 19 18 22 22 O 1.42097 * 104.28145 * 26.04647 * 20 19 18 23 23 O 1.42101 * 104.27455 * 153.90753 * 20 19 18 24 24 C 1.46961 * 118.81327 * 304.64784 * 19 18 17 25 25 C 1.46970 * 120.59431 * 185.21314 * 16 14 13 26 26 H 1.08995 * 109.47349 * 300.00060 * 1 2 3 27 27 H 1.08999 * 109.46883 * 60.00574 * 1 2 3 28 28 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47572 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47190 * 300.00116 * 3 2 1 31 31 H 1.09004 * 109.46795 * 59.99419 * 3 2 1 32 32 H 0.96999 * 120.00108 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47052 * 60.00193 * 12 2 1 34 34 H 1.09005 * 109.46749 * 179.97438 * 12 2 1 35 35 H 0.97005 * 119.99608 * 0.02562 * 13 12 2 36 36 H 1.09001 * 109.60690 * 244.53860 * 17 16 14 37 37 H 1.09001 * 109.61175 * 5.04587 * 17 16 14 38 38 H 1.08998 * 109.74454 * 289.85073 * 18 17 16 39 39 H 1.08999 * 109.54228 * 169.30312 * 18 17 16 40 40 H 1.08997 * 109.47208 * 60.00220 * 21 20 19 41 41 H 1.09002 * 109.47051 * 180.02562 * 21 20 19 42 42 H 1.09008 * 109.47269 * 300.00338 * 21 20 19 43 43 H 1.09006 * 109.60971 * 295.48315 * 24 19 18 44 44 H 1.08997 * 109.61104 * 174.97338 * 24 19 18 45 45 H 1.08997 * 109.60801 * 354.94787 * 25 16 14 46 46 H 1.08998 * 109.60660 * 115.46319 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1466 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.4985 -1.5302 3.7828 16 7 1.5129 0.1993 4.7681 17 6 0.6698 1.3975 4.6531 18 6 -0.5692 1.2068 5.5443 19 7 -0.1250 0.7787 6.8782 20 16 -0.5723 1.6273 8.2281 21 6 0.7396 2.8618 8.4419 22 8 -1.7925 2.2553 7.8590 23 8 -0.5297 0.6678 9.2753 24 6 0.7226 -0.4164 6.9928 25 6 1.9570 -0.2289 6.1020 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7082 1.1609 -3.4844 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 0.9937 0.7578 2.3564 36 1 1.2302 2.2721 4.9834 37 1 0.3599 1.5286 3.6163 38 1 -1.2191 0.4453 5.1133 39 1 -1.1097 2.1500 5.6240 40 1 0.7871 3.4982 7.5583 41 1 0.5244 3.4724 9.3188 42 1 1.6957 2.3561 8.5773 43 1 0.1646 -1.2935 6.6648 44 1 1.0353 -0.5451 8.0290 45 1 2.4974 -1.1721 6.0224 46 1 2.6069 0.5327 6.5331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414662938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:56 Heat of formation + Delta-G solvation = -106.461171 kcal Electronic energy + Delta-G solvation = -28037.821529 eV Core-core repulsion = 24089.506722 eV Total energy + Delta-G solvation = -3948.314807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40488 -38.98383 -38.23400 -37.95887 -37.00577 -35.26112 -34.64881 -32.81777 -32.04929 -30.23647 -28.33394 -27.53855 -27.37799 -26.38826 -24.82488 -23.13982 -21.11516 -20.61416 -20.06734 -19.27999 -18.10925 -17.74009 -17.35753 -17.31654 -16.99915 -16.69483 -16.57741 -15.69793 -15.45235 -15.30497 -15.21072 -15.06515 -14.67745 -14.25786 -14.03401 -13.99754 -13.91140 -13.59509 -13.47977 -13.18035 -13.17361 -13.10679 -12.98274 -12.68154 -12.56721 -12.51486 -12.33193 -12.23220 -12.12832 -12.10643 -11.85589 -11.46334 -11.29361 -11.06421 -10.67856 -10.54869 -10.38211 -9.98249 -9.27589 -8.01128 -6.16164 -0.70240 1.42135 1.46469 1.50104 1.56058 1.82239 2.19084 2.47068 2.97527 3.04785 3.15239 3.22784 3.56436 3.88664 4.09292 4.10493 4.22567 4.24888 4.27934 4.42211 4.46353 4.56149 4.60773 4.73177 4.75804 4.89955 4.92911 5.01707 5.04181 5.07717 5.12326 5.13859 5.22554 5.40993 5.47520 5.56396 5.65719 5.69585 5.70066 5.97833 6.18168 6.24493 6.46031 6.88293 7.04991 7.51589 7.62746 8.97905 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.002536 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.660033 B =11038.585951 C =11519.580600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.168 3.832 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.639 6.639 16 N -0.626 5.626 17 C 0.090 3.910 18 C 0.107 3.893 19 N -0.999 5.999 20 S 2.614 3.386 21 C -0.649 4.649 22 O -0.992 6.992 23 O -0.994 6.994 24 C 0.112 3.888 25 C 0.112 3.888 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.015 0.985 29 H 0.018 0.982 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.404 0.596 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.149 0.851 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 8.653 22.007 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.384 5.384 14 C 0.400 3.600 15 O -0.521 6.521 16 N -0.364 5.364 17 C -0.034 4.034 18 C -0.020 4.020 19 N -0.836 5.836 20 S 2.712 3.288 21 C -0.803 4.803 22 O -0.983 6.983 23 O -0.984 6.984 24 C -0.015 4.015 25 C -0.012 4.012 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.243 0.757 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.410 7.854 22.442 23.819 hybrid contribution 0.562 -0.234 -1.511 1.629 sum -0.848 7.620 20.931 22.291 Atomic orbital electron populations 1.21655 0.97160 0.98521 1.00329 1.18357 0.93189 0.93174 0.90140 1.21642 0.97923 0.97632 1.00375 1.21303 1.31593 1.12100 0.91608 0.93856 1.25417 0.95170 0.95596 1.00851 1.69905 1.36992 1.23292 1.23513 0.85736 0.78103 0.78757 0.80368 1.20115 1.20843 1.20684 1.21101 0.96603 0.94614 0.83337 1.45372 1.55802 1.33325 1.03949 1.16127 0.79669 0.82863 0.81391 1.90851 1.49037 1.25918 1.86304 1.47175 1.54505 1.29543 1.05139 1.22414 0.91823 0.87817 1.01339 1.21956 0.95659 1.02617 0.81728 1.57573 1.65880 1.39303 1.20864 1.04649 0.76433 0.75524 0.72204 1.30373 1.18785 1.17647 1.13527 1.93565 1.43553 1.78603 1.82585 1.93560 1.88075 1.60290 1.56505 1.21828 0.90858 0.87059 1.01724 1.22008 0.96264 1.02600 0.80334 0.94492 0.91852 0.96596 0.96294 0.91923 0.94348 0.93043 0.95016 0.94624 0.75664 0.87460 0.89054 0.91542 0.85893 0.83167 0.83779 0.83271 0.92033 0.86129 0.89579 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.01 8.08 71.98 0.58 -4.43 16 4 C -0.53 -27.57 8.01 25.60 0.21 -27.36 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.53 5.15 84.65 0.44 1.96 16 7 N -0.90 -46.99 9.35 21.45 0.20 -46.79 16 8 Si 0.94 42.21 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.17 7.06 4.51 86.38 0.39 7.45 16 13 N -0.73 -24.29 4.87 -478.54 -2.33 -26.62 16 14 C 0.70 23.06 8.29 179.06 1.49 24.54 16 15 O -0.64 -26.72 15.76 -4.00 -0.06 -26.78 16 16 N -0.63 -13.86 2.94 -835.15 -2.46 -16.32 16 17 C 0.09 1.30 6.59 86.56 0.57 1.87 16 18 C 0.11 1.46 6.50 86.56 0.56 2.02 16 19 N -1.00 -13.53 3.20 -511.43 -1.63 -15.17 16 20 S 2.61 33.88 6.06 -56.49 -0.34 33.53 16 21 C -0.65 -1.94 10.99 113.37 1.25 -0.69 16 22 O -0.99 -20.04 16.70 -127.65 -2.13 -22.17 16 23 O -0.99 -20.14 16.70 -127.65 -2.13 -22.27 16 24 C 0.11 1.66 6.49 86.42 0.56 2.22 16 25 C 0.11 1.93 6.60 86.42 0.57 2.50 16 26 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 27 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 28 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 31 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 32 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.40 11.43 3.63 -92.70 -0.34 11.10 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.37 5.61 -2.39 -0.01 1.36 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 1.22 7.06 -2.39 -0.02 1.21 16 40 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.12 1.34 7.06 -2.39 -0.02 1.32 16 45 H 0.09 1.89 6.99 -2.39 -0.02 1.88 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.87 368.06 -1.05 -76.92 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.65 Total: 13.57 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.16 Total: 7.85 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -6.22 Total: -104.89 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -4.33 Total: -71.22 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 33.88 SS G_CDS: -0.34 Total: 33.53 kcal Total: -75.87 -1.05 -76.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414662938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.539 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds