Wall clock time and date at job start Tue Mar 31 2020 17:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 N 1.46506 * 109.46964 * 119.99662 * 2 1 3 5 5 C 1.46504 * 120.00089 * 300.00335 * 4 2 1 6 6 C 1.52994 * 109.46868 * 269.99993 * 5 4 2 7 7 N 1.46504 * 109.46868 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00132 * 90.00036 * 7 6 5 9 9 C 1.36936 * 119.99777 * 269.99769 * 7 6 5 10 10 H 1.07997 * 120.00224 * 23.05357 * 9 7 6 11 11 C 1.38815 * 119.99735 * 203.04872 * 9 7 6 12 12 N 1.31613 * 119.99993 * 12.93637 * 11 9 7 13 13 Si 1.86804 * 119.99709 * 192.93347 * 11 9 7 14 14 H 1.48498 * 109.47089 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.46815 * 120.00149 * 13 11 9 16 16 H 1.48502 * 109.46713 * 239.99745 * 13 11 9 17 17 C 1.34775 * 119.99941 * 120.00103 * 4 2 1 18 18 O 1.21282 * 120.00020 * 180.02562 * 17 4 2 19 19 C 1.50699 * 120.00022 * 359.72633 * 17 4 2 20 20 H 1.08997 * 108.58332 * 40.97151 * 19 17 4 21 21 C 1.53204 * 108.64543 * 282.97815 * 19 17 4 22 22 C 1.55356 * 106.34390 * 211.21337 * 21 19 17 23 23 S 1.83898 * 99.54245 * 37.18497 * 22 21 19 24 24 O 1.42093 * 111.46894 * 215.81980 * 23 22 21 25 25 O 1.42102 * 111.46745 * 75.75743 * 23 22 21 26 26 N 1.46448 * 108.64975 * 158.97441 * 19 17 4 27 27 H 1.08994 * 109.47152 * 300.00153 * 1 2 3 28 28 H 1.09003 * 109.46830 * 60.00606 * 1 2 3 29 29 H 1.09005 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47378 * 239.99360 * 2 1 3 31 31 H 1.08999 * 109.47075 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46905 * 299.99954 * 3 2 1 33 33 H 1.09003 * 109.47178 * 59.99711 * 3 2 1 34 34 H 1.08998 * 109.47044 * 29.99913 * 5 4 2 35 35 H 1.08997 * 109.47071 * 149.99699 * 5 4 2 36 36 H 1.08998 * 109.47223 * 299.99811 * 6 5 4 37 37 H 1.08997 * 109.47514 * 59.99978 * 6 5 4 38 38 H 1.09004 * 109.47297 * 95.11923 * 8 7 6 39 39 H 1.09001 * 109.46989 * 215.12356 * 8 7 6 40 40 H 1.09005 * 109.46982 * 335.11938 * 8 7 6 41 41 H 0.97006 * 120.00197 * 180.02562 * 12 11 9 42 42 H 1.09002 * 110.10415 * 330.53346 * 21 19 17 43 43 H 1.08998 * 110.09987 * 92.14778 * 21 19 17 44 44 H 1.09000 * 111.49725 * 279.58454 * 22 21 19 45 45 H 1.09006 * 111.37266 * 154.73421 * 22 21 19 46 46 H 0.97003 * 126.08084 * 302.79649 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6643 -0.1900 2.5269 6 6 2.7189 0.8170 2.9900 7 7 2.3652 1.3171 4.3209 8 6 2.8539 0.6263 5.5167 9 6 1.5778 2.4304 4.4470 10 1 0.9225 2.7226 3.6398 11 6 1.6219 3.1832 5.6124 12 7 2.5870 2.9882 6.4857 13 14 0.3113 4.4731 5.9411 14 1 -0.6540 4.4967 4.8129 15 1 -0.4048 4.1417 7.1992 16 1 0.9513 5.8067 6.0724 17 6 2.7932 -1.7864 1.0727 18 8 3.1971 -2.3583 2.0630 19 6 3.1522 -2.3049 -0.2960 20 1 3.3773 -1.4557 -0.9411 21 6 1.9427 -3.0493 -0.8705 22 6 2.5124 -4.1732 -1.7794 23 16 3.9830 -4.6532 -0.7851 24 8 5.0802 -5.0057 -1.6163 25 8 3.6148 -5.4304 0.3462 26 7 4.3518 -3.1371 -0.1817 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.6903 0.2974 2.4844 35 1 1.6237 -1.0225 3.2292 36 1 3.6929 0.3296 3.0325 37 1 2.7596 1.6495 2.2876 38 1 3.7676 1.1072 5.8663 39 1 2.0962 0.6737 6.2988 40 1 3.0616 -0.4160 5.2748 41 1 2.6176 3.5141 7.3003 42 1 1.3514 -3.4824 -0.0637 43 1 1.3298 -2.3685 -1.4611 44 1 2.8024 -3.7878 -2.7569 45 1 1.8099 -5.0012 -1.8748 46 1 5.2080 -2.8586 0.1793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486379640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:10 Heat of formation + Delta-G solvation = -93.901877 kcal Electronic energy + Delta-G solvation = -28442.543756 eV Core-core repulsion = 24494.773561 eV Total energy + Delta-G solvation = -3947.770195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52336 -38.47586 -38.09152 -37.38522 -37.12332 -36.90382 -33.71003 -32.77445 -32.45352 -30.44148 -28.22971 -27.93082 -27.68090 -25.15076 -23.66257 -22.61478 -22.33200 -20.60368 -19.99321 -18.99464 -18.68289 -18.56906 -17.56427 -17.20323 -16.78631 -16.69870 -16.07296 -15.70430 -15.63814 -15.42359 -15.00615 -14.84556 -14.57602 -14.39186 -14.25440 -13.97336 -13.83363 -13.51216 -13.29230 -13.21067 -13.13468 -13.06933 -12.93095 -12.83960 -12.74855 -12.62201 -12.49482 -12.35976 -12.10927 -12.05056 -11.90856 -11.72688 -11.48623 -11.39965 -11.24632 -10.70840 -10.21837 -9.78019 -8.76723 -7.82583 -5.34334 -0.72347 1.43717 1.47442 1.48509 1.59065 1.66022 2.00518 2.52079 2.64057 2.87819 3.27615 3.31458 3.41573 3.59148 3.71888 3.86474 4.03311 4.14104 4.22647 4.26468 4.34733 4.44316 4.56991 4.63707 4.66050 4.72355 4.76453 4.84655 4.89306 4.93239 4.95849 5.08589 5.13097 5.13854 5.26855 5.50574 5.52622 5.57524 5.63472 5.65526 6.02055 6.30520 6.51408 7.11146 7.20885 7.82136 8.30583 9.21484 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.003011 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.555414 B = 9298.311940 C =10066.679577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 C -0.171 4.171 4 N -0.594 5.594 5 C 0.113 3.887 6 C 0.144 3.856 7 N -0.616 5.616 8 C 0.181 3.819 9 C -0.260 4.260 10 H 0.081 0.919 11 C -0.058 4.058 12 N -0.943 5.943 13 Si 0.973 3.027 14 H -0.258 1.258 15 H -0.295 1.295 16 H -0.293 1.293 17 C 0.487 3.513 18 O -0.576 6.576 19 C 0.096 3.904 20 H 0.150 0.850 21 C -0.127 4.127 22 C -0.535 4.535 23 S 2.549 3.451 24 O -0.996 6.996 25 O -1.005 7.005 26 N -1.083 6.083 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.016 0.984 37 H 0.065 0.935 38 H 0.003 0.997 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.247 0.753 42 H 0.090 0.910 43 H 0.172 0.828 44 H 0.189 0.811 45 H 0.176 0.824 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 -9.588 -26.649 28.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 C -0.228 4.228 4 N -0.327 5.327 5 C -0.013 4.013 6 C 0.017 3.983 7 N -0.340 5.340 8 C 0.035 3.965 9 C -0.390 4.390 10 H 0.099 0.901 11 C -0.252 4.252 12 N -0.590 5.590 13 Si 0.801 3.199 14 H -0.181 1.181 15 H -0.222 1.222 16 H -0.220 1.220 17 C 0.273 3.727 18 O -0.455 6.455 19 C -0.016 4.016 20 H 0.168 0.832 21 C -0.167 4.167 22 C -0.670 4.670 23 S 2.649 3.351 24 O -0.985 6.985 25 O -0.994 6.994 26 N -0.847 5.847 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.190 0.810 44 H 0.207 0.793 45 H 0.194 0.806 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.999 -10.755 -25.823 28.416 hybrid contribution -0.026 1.338 1.679 2.147 sum -5.024 -9.417 -24.144 26.398 Atomic orbital electron populations 1.22220 0.93482 1.03291 1.03294 1.21727 0.95811 0.93715 0.87084 1.22337 1.01342 0.95980 1.03183 1.48306 1.49792 1.27189 1.07435 1.21833 0.99497 0.96800 0.83191 1.21278 0.94664 0.95775 0.86622 1.44087 1.59437 1.29776 1.00737 1.20464 0.96912 0.90704 0.88408 1.19597 1.15362 1.01870 1.02147 0.90122 1.25916 0.99876 1.00748 0.98705 1.70275 1.33156 1.43792 1.11795 0.85113 0.78757 0.78143 0.77866 1.18150 1.22191 1.22018 1.21773 0.78068 0.80210 0.92629 1.90758 1.54219 1.59090 1.41390 1.21600 0.87357 0.98806 0.93867 0.83249 1.22676 0.95441 0.98576 0.99962 1.30557 1.15635 1.09098 1.11746 1.06882 0.78671 0.73286 0.76294 1.93565 1.52938 1.82688 1.69358 1.93624 1.84985 1.69791 1.50990 1.54762 1.18146 1.30950 1.80842 0.94149 0.88331 0.91071 0.84808 0.92848 0.88465 0.93927 0.89989 0.93841 0.96511 0.91691 0.97847 0.96287 0.96848 0.94361 0.89152 0.81037 0.79304 0.80611 0.72478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.17 71.98 0.66 -1.27 16 2 C 0.12 1.62 2.83 44.99 0.13 1.74 16 3 C -0.17 -2.83 8.14 71.98 0.59 -2.24 16 4 N -0.59 -14.51 2.40 -797.84 -1.91 -16.42 16 5 C 0.11 3.93 5.15 86.38 0.44 4.38 16 6 C 0.14 6.05 5.69 86.38 0.49 6.54 16 7 N -0.62 -32.17 2.92 -726.94 -2.12 -34.29 16 8 C 0.18 9.84 8.98 127.77 1.15 10.98 16 9 C -0.26 -14.11 9.65 84.03 0.81 -13.30 16 10 H 0.08 4.08 7.86 -2.91 -0.02 4.05 16 11 C -0.06 -3.25 5.10 84.86 0.43 -2.82 16 12 N -0.94 -57.30 10.71 21.65 0.23 -57.07 16 13 Si 0.97 44.53 29.57 68.60 2.03 46.56 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 C 0.49 12.92 6.68 87.66 0.59 13.51 16 18 O -0.58 -22.64 16.11 -3.04 -0.05 -22.69 16 19 C 0.10 1.37 2.81 44.32 0.12 1.49 16 20 H 0.15 0.88 6.62 -2.39 -0.02 0.87 16 21 C -0.13 -0.79 5.57 31.47 0.18 -0.62 16 22 C -0.53 -1.74 7.65 72.79 0.56 -1.18 16 23 S 2.55 46.77 6.47 -56.49 -0.37 46.41 16 24 O -1.00 -24.14 18.14 -127.81 -2.32 -26.45 16 25 O -1.00 -30.14 18.14 -127.81 -2.32 -32.46 16 26 N -1.08 -20.38 6.14 -172.33 -1.06 -21.44 16 27 H 0.04 0.73 6.66 -2.39 -0.02 0.71 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.13 0.57 4.41 -2.39 -0.01 0.56 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 1.02 6.17 -2.39 -0.01 1.01 16 34 H 0.08 2.77 6.43 -2.39 -0.02 2.76 16 35 H 0.04 1.80 7.42 -2.39 -0.02 1.78 16 36 H 0.02 0.75 8.07 -2.39 -0.02 0.73 16 37 H 0.06 2.57 5.34 -2.39 -0.01 2.56 16 38 H 0.00 0.19 7.34 -2.38 -0.02 0.18 16 39 H 0.02 1.07 7.34 -2.39 -0.02 1.05 16 40 H 0.01 0.66 8.03 -2.38 -0.02 0.64 16 41 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 42 H 0.09 0.93 7.82 -2.39 -0.02 0.91 16 43 H 0.17 -0.56 7.15 -2.39 -0.02 -0.58 16 44 H 0.19 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.18 -0.25 8.14 -2.38 -0.02 -0.27 16 46 H 0.44 8.62 8.96 -93.00 -0.83 7.78 16 Total: -1.00 -93.93 372.13 -1.58 -95.51 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.17 Total: 5.12 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.14 Total: 17.22 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -4.86 Total: -129.22 kcal Atomic # 8 Polarization: -76.92 SS G_CDS: -4.69 Total: -81.60 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 46.77 SS G_CDS: -0.37 Total: 46.41 kcal Total: -93.93 -1.58 -95.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486379640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.608 kcal (2) G-P(sol) polarization free energy of solvation -93.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds