Wall clock time and date at job start Tue Mar 31 2020 17:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47073 * 304.99880 * 4 3 2 6 6 C 1.50705 * 109.46855 * 185.00089 * 4 3 2 7 7 O 1.21281 * 120.00071 * 329.99997 * 6 4 3 8 8 N 1.34777 * 119.99937 * 150.00502 * 6 4 3 9 9 C 1.46497 * 120.00242 * 179.97438 * 8 6 4 10 10 C 1.52990 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.90908 * 43.75361 * 10 9 8 12 12 C 1.53786 * 113.61464 * 174.99989 * 10 9 8 13 13 C 1.53781 * 87.17350 * 140.02626 * 12 10 9 14 14 H 1.08999 * 113.61567 * 89.07405 * 13 12 10 15 15 N 1.46493 * 113.61552 * 219.97837 * 13 12 10 16 16 C 1.36942 * 120.00387 * 205.00019 * 15 13 12 17 17 H 1.08003 * 119.99659 * 0.02562 * 16 15 13 18 18 C 1.38801 * 120.00282 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00286 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46811 * 90.00227 * 20 18 16 22 22 H 1.48492 * 109.47274 * 210.00260 * 20 18 16 23 23 H 1.48502 * 109.46879 * 330.00300 * 20 18 16 24 24 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 25 25 S 1.81400 * 109.46924 * 65.00220 * 4 3 2 26 26 N 1.65598 * 104.45167 * 59.99843 * 25 4 3 27 27 O 1.42107 * 110.54132 * 171.62268 * 25 4 3 28 28 O 1.42100 * 110.54510 * 308.37474 * 25 4 3 29 29 H 1.08991 * 109.47061 * 59.99881 * 1 2 3 30 30 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46482 * 299.99748 * 1 2 3 32 32 H 1.08997 * 109.47155 * 239.99920 * 2 1 3 33 33 H 1.09003 * 109.47506 * 120.00033 * 2 1 3 34 34 H 1.09003 * 109.47419 * 60.00286 * 3 2 1 35 35 H 1.08997 * 109.47419 * 300.00405 * 3 2 1 36 36 H 0.97003 * 119.99582 * 359.97438 * 8 6 4 37 37 H 1.09007 * 109.46596 * 59.99839 * 9 8 6 38 38 H 1.08994 * 109.47005 * 300.00149 * 9 8 6 39 39 H 1.09002 * 113.61357 * 25.43543 * 12 10 9 40 40 H 1.09002 * 113.61608 * 254.61705 * 12 10 9 41 41 H 0.97006 * 120.00380 * 24.99977 * 15 13 12 42 42 H 0.96995 * 120.00493 * 180.02562 * 19 18 16 43 43 H 1.09005 * 113.61471 * 139.98321 * 24 13 12 44 44 H 1.08996 * 113.61178 * 270.79663 * 24 13 12 45 45 H 0.97003 * 119.99911 * 0.02562 * 26 25 4 46 46 H 0.96999 * 120.00398 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0723 2.8580 0.1245 7 8 3.4170 3.7753 -0.3228 8 7 5.2497 3.1045 0.7323 9 6 5.7383 4.4804 0.8522 10 6 7.0853 4.4819 1.5774 11 1 7.7560 3.6967 1.2283 12 6 7.7453 5.8691 1.6484 13 6 8.1626 5.5130 3.0850 14 1 9.1271 5.0092 3.1474 15 7 8.0406 6.6297 4.0254 16 6 8.8119 6.6597 5.1566 17 1 9.5104 5.8602 5.3552 18 6 8.6967 7.7179 6.0473 19 7 7.8459 8.6925 5.8050 20 14 9.7483 7.7585 7.5907 21 1 11.0229 8.4641 7.3028 22 1 9.0188 8.4740 8.6681 23 1 10.0393 6.3694 8.0280 24 6 6.9627 4.5516 3.1114 25 16 4.1753 0.7195 -1.5491 26 7 3.5576 1.7004 -2.7317 27 8 5.5828 0.8820 -1.6588 28 8 3.5628 -0.5410 -1.7840 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 5.7736 2.3708 1.0903 37 1 5.0200 5.0728 1.4192 38 1 5.8598 4.9107 -0.1418 39 1 7.0349 6.6939 1.5918 40 1 8.5869 5.9877 0.9660 41 1 7.4136 7.3479 3.8469 42 1 7.7656 9.4322 6.4272 43 1 7.1724 3.6051 3.6098 44 1 6.0388 5.0158 3.4562 45 1 3.0067 2.4619 -2.4915 46 1 3.7471 1.5140 -3.6645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688908257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:13 Heat of formation + Delta-G solvation = -90.294097 kcal Electronic energy + Delta-G solvation = -26880.706319 eV Core-core repulsion = 22933.092569 eV Total energy + Delta-G solvation = -3947.613750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.34763 -38.61193 -37.75911 -36.46234 -35.91238 -34.94346 -33.51255 -33.36379 -31.45659 -30.24236 -27.64659 -25.23516 -25.09740 -23.80327 -21.87179 -21.23290 -21.16551 -19.94175 -19.16633 -18.56185 -18.11456 -17.17966 -17.01441 -16.56759 -16.22156 -16.06223 -15.36885 -15.03689 -14.77122 -14.57293 -14.25995 -14.17772 -13.63007 -13.53496 -13.15721 -12.97763 -12.87984 -12.61904 -12.57552 -12.51870 -12.00108 -11.93786 -11.87581 -11.50037 -11.43791 -11.40370 -11.27619 -10.87915 -10.80139 -10.73073 -10.56175 -10.39957 -10.18844 -10.05667 -9.87684 -9.55512 -9.26070 -8.90323 -6.99762 -5.81323 -3.10369 -0.40482 2.09714 2.30718 2.69452 3.05643 3.40594 3.45846 3.47522 3.53903 3.93703 4.30705 4.38230 4.55404 4.62917 4.70511 4.88503 4.91235 5.05476 5.16780 5.19013 5.38673 5.41942 5.42895 5.44869 5.62141 5.71397 5.72763 5.73753 5.80627 5.86866 6.00265 6.04593 6.05649 6.25331 6.29826 6.34970 6.54150 6.68154 6.77228 7.06375 7.09038 7.66318 7.71888 8.37268 9.48352 10.06261 10.40356 11.41033 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.002140 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.066954 B =13081.851059 C =13563.810416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.087 4.087 4 C -0.617 4.617 5 H 0.163 0.837 6 C 0.528 3.472 7 O -0.523 6.523 8 N -0.707 5.707 9 C 0.129 3.871 10 C -0.130 4.130 11 H 0.092 0.908 12 C -0.141 4.141 13 C 0.166 3.834 14 H 0.076 0.924 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.162 4.162 25 S 2.629 3.371 26 N -1.245 6.245 27 O -0.949 6.949 28 O -0.946 6.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.420 0.580 46 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 -18.261 -16.850 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C -0.126 4.126 4 C -0.727 4.727 5 H 0.180 0.820 6 C 0.310 3.690 7 O -0.399 6.399 8 N -0.357 5.357 9 C 0.007 3.993 10 C -0.150 4.150 11 H 0.110 0.890 12 C -0.181 4.181 13 C 0.054 3.946 14 H 0.094 0.906 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.203 4.203 25 S 2.717 3.283 26 N -0.922 5.922 27 O -0.938 6.938 28 O -0.935 6.935 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.240 0.760 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.249 0.751 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.230 -18.457 -16.937 27.876 hybrid contribution 0.093 0.630 1.292 1.440 sum -12.137 -17.827 -15.645 26.644 Atomic orbital electron populations 1.21690 0.94790 1.02092 1.01998 1.22260 0.97596 0.95300 1.05503 1.21309 0.86324 0.99124 1.05808 1.30662 1.09894 1.06862 1.25259 0.81951 1.19131 0.81835 0.88186 0.79835 1.90750 1.56265 1.44704 1.48212 1.46061 1.20897 1.11137 1.57644 1.21592 0.95613 0.81018 1.01086 1.22728 0.94986 0.99900 0.97355 0.88969 1.23446 0.99891 0.95019 0.99768 1.21506 0.95352 0.89679 0.88085 0.90579 1.42413 1.47234 1.23042 1.22353 1.19302 1.15492 1.04883 0.97880 0.91087 1.24772 0.99707 0.97159 0.99291 1.69657 1.38773 1.11665 1.37936 0.86187 0.79674 0.77374 0.82929 1.21661 1.21761 1.20743 1.24021 1.02737 1.01112 0.92445 1.04516 0.74354 0.74117 0.75357 1.52976 1.70829 1.46665 1.21747 1.93652 1.29958 1.85879 1.84361 1.93564 1.77076 1.40071 1.82758 0.92449 0.92224 0.92695 0.87537 0.91233 0.89165 0.89709 0.76034 0.90643 0.91070 0.90077 0.91846 0.78066 0.93430 0.92715 0.90336 0.75133 0.74816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.17 -1.12 5.65 -26.73 -0.15 -1.27 16 3 C -0.09 -0.60 4.14 -26.73 -0.11 -0.71 16 4 C -0.62 -4.46 2.75 -27.88 -0.08 -4.53 16 5 H 0.16 0.71 8.14 -51.92 -0.42 0.28 16 6 C 0.53 5.44 6.60 -10.98 -0.07 5.36 16 7 O -0.52 -6.66 15.66 5.56 0.09 -6.57 16 8 N -0.71 -7.27 5.56 -60.30 -0.33 -7.60 16 9 C 0.13 1.57 5.52 -4.05 -0.02 1.54 16 10 C -0.13 -1.67 3.76 -89.67 -0.34 -2.01 16 11 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 12 C -0.14 -2.17 7.39 -25.92 -0.19 -2.37 16 13 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 14 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 15 N -0.71 -17.48 5.40 -52.64 -0.28 -17.76 16 16 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.16 -2.56 7.44 -25.78 -0.19 -2.76 16 25 S 2.63 21.49 5.46 -107.50 -0.59 20.90 16 26 N -1.25 -7.96 9.13 60.35 0.55 -7.41 16 27 O -0.95 -10.86 18.01 -57.54 -1.04 -11.90 16 28 O -0.95 -9.29 14.89 -57.54 -0.86 -10.15 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.11 0.81 4.90 -51.93 -0.25 0.56 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.52 6.97 -51.93 -0.36 0.16 16 36 H 0.40 3.30 8.47 -40.82 -0.35 2.96 16 37 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.39 10.06 7.92 -40.82 -0.32 9.74 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 45 H 0.42 2.46 7.18 -34.47 -0.25 2.21 16 46 H 0.42 1.96 8.96 -34.47 -0.31 1.65 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -35.22 385.06 -9.56 -44.78 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.27 Total: 11.72 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.33 Total: -11.73 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.66 Total: -59.97 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.81 Total: -28.62 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 21.49 SS G_CDS: -0.59 Total: 20.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.22 -9.56 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688908257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.509 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds