Wall clock time and date at job start Tue Mar 31 2020 17:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47073 * 304.99880 * 4 3 2 6 6 C 1.50705 * 109.46855 * 185.00089 * 4 3 2 7 7 O 1.21281 * 120.00071 * 329.99997 * 6 4 3 8 8 N 1.34777 * 119.99937 * 150.00502 * 6 4 3 9 9 C 1.46497 * 120.00242 * 179.97438 * 8 6 4 10 10 C 1.52990 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.90908 * 43.75361 * 10 9 8 12 12 C 1.53786 * 113.61464 * 174.99989 * 10 9 8 13 13 C 1.53781 * 87.17350 * 140.02626 * 12 10 9 14 14 H 1.08999 * 113.61567 * 89.07405 * 13 12 10 15 15 N 1.46493 * 113.61552 * 219.97837 * 13 12 10 16 16 C 1.36942 * 120.00387 * 205.00019 * 15 13 12 17 17 H 1.08003 * 119.99659 * 0.02562 * 16 15 13 18 18 C 1.38801 * 120.00282 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00286 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46811 * 90.00227 * 20 18 16 22 22 H 1.48492 * 109.47274 * 210.00260 * 20 18 16 23 23 H 1.48502 * 109.46879 * 330.00300 * 20 18 16 24 24 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 25 25 S 1.81400 * 109.46924 * 65.00220 * 4 3 2 26 26 N 1.65598 * 104.45167 * 59.99843 * 25 4 3 27 27 O 1.42107 * 110.54132 * 171.62268 * 25 4 3 28 28 O 1.42100 * 110.54510 * 308.37474 * 25 4 3 29 29 H 1.08991 * 109.47061 * 59.99881 * 1 2 3 30 30 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46482 * 299.99748 * 1 2 3 32 32 H 1.08997 * 109.47155 * 239.99920 * 2 1 3 33 33 H 1.09003 * 109.47506 * 120.00033 * 2 1 3 34 34 H 1.09003 * 109.47419 * 60.00286 * 3 2 1 35 35 H 1.08997 * 109.47419 * 300.00405 * 3 2 1 36 36 H 0.97003 * 119.99582 * 359.97438 * 8 6 4 37 37 H 1.09007 * 109.46596 * 59.99839 * 9 8 6 38 38 H 1.08994 * 109.47005 * 300.00149 * 9 8 6 39 39 H 1.09002 * 113.61357 * 25.43543 * 12 10 9 40 40 H 1.09002 * 113.61608 * 254.61705 * 12 10 9 41 41 H 0.97006 * 120.00380 * 24.99977 * 15 13 12 42 42 H 0.96995 * 120.00493 * 180.02562 * 19 18 16 43 43 H 1.09005 * 113.61471 * 139.98321 * 24 13 12 44 44 H 1.08996 * 113.61178 * 270.79663 * 24 13 12 45 45 H 0.97003 * 119.99911 * 0.02562 * 26 25 4 46 46 H 0.96999 * 120.00398 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0723 2.8580 0.1245 7 8 3.4170 3.7753 -0.3228 8 7 5.2497 3.1045 0.7323 9 6 5.7383 4.4804 0.8522 10 6 7.0853 4.4819 1.5774 11 1 7.7560 3.6967 1.2283 12 6 7.7453 5.8691 1.6484 13 6 8.1626 5.5130 3.0850 14 1 9.1271 5.0092 3.1474 15 7 8.0406 6.6297 4.0254 16 6 8.8119 6.6597 5.1566 17 1 9.5104 5.8602 5.3552 18 6 8.6967 7.7179 6.0473 19 7 7.8459 8.6925 5.8050 20 14 9.7483 7.7585 7.5907 21 1 11.0229 8.4641 7.3028 22 1 9.0188 8.4740 8.6681 23 1 10.0393 6.3694 8.0280 24 6 6.9627 4.5516 3.1114 25 16 4.1753 0.7195 -1.5491 26 7 3.5576 1.7004 -2.7317 27 8 5.5828 0.8820 -1.6588 28 8 3.5628 -0.5410 -1.7840 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 5.7736 2.3708 1.0903 37 1 5.0200 5.0728 1.4192 38 1 5.8598 4.9107 -0.1418 39 1 7.0349 6.6939 1.5918 40 1 8.5869 5.9877 0.9660 41 1 7.4136 7.3479 3.8469 42 1 7.7656 9.4322 6.4272 43 1 7.1724 3.6051 3.6098 44 1 6.0388 5.0158 3.4562 45 1 3.0067 2.4619 -2.4915 46 1 3.7471 1.5140 -3.6645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688908257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:12 Heat of formation + Delta-G solvation = -119.072059 kcal Electronic energy + Delta-G solvation = -26881.954225 eV Core-core repulsion = 22933.092569 eV Total energy + Delta-G solvation = -3948.861656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.21750 -39.88113 -38.47063 -37.19741 -36.55868 -36.08208 -35.08657 -34.05286 -32.40539 -31.78102 -28.77918 -26.44653 -26.19603 -25.37875 -22.54008 -22.39454 -22.02095 -20.68871 -20.42520 -19.18429 -19.11677 -18.78109 -17.83555 -17.41735 -16.97855 -16.81845 -16.54226 -16.31526 -15.88946 -15.61220 -15.31148 -15.05859 -14.84334 -14.77191 -14.38598 -13.80529 -13.51379 -13.41139 -13.30778 -13.29706 -13.22426 -13.16736 -13.02637 -12.93192 -12.66966 -12.50177 -12.20125 -12.08596 -12.00312 -11.93719 -11.64670 -11.55873 -11.35389 -11.28729 -11.11914 -10.94573 -10.80387 -10.19147 -8.97224 -7.94593 -5.22667 -1.05887 1.32033 1.47405 1.48811 1.57099 1.63078 1.95978 2.42912 2.56667 2.89372 3.29935 3.38093 3.65434 3.71552 3.73560 3.84944 3.93135 4.11652 4.20893 4.26364 4.35017 4.41078 4.54633 4.56792 4.69818 4.75391 4.88010 4.94940 4.97353 4.99302 5.05044 5.15522 5.19994 5.25543 5.28452 5.34316 5.40819 5.50795 5.52547 5.72631 6.23638 6.27985 6.29753 6.93479 7.33629 8.12172 8.33667 9.28891 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.002140 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.066954 B =13081.851059 C =13563.810416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.170 4.170 3 C -0.089 4.089 4 C -0.605 4.605 5 H 0.195 0.805 6 C 0.525 3.475 7 O -0.549 6.549 8 N -0.705 5.705 9 C 0.134 3.866 10 C -0.101 4.101 11 H 0.119 0.881 12 C -0.136 4.136 13 C 0.141 3.859 14 H 0.079 0.921 15 N -0.730 5.730 16 C -0.241 4.241 17 H 0.078 0.922 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.153 4.153 25 S 2.644 3.356 26 N -1.240 6.240 27 O -0.982 6.982 28 O -0.962 6.962 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.424 0.576 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 -20.195 -17.306 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C -0.127 4.127 4 C -0.716 4.716 5 H 0.212 0.788 6 C 0.309 3.691 7 O -0.427 6.427 8 N -0.356 5.356 9 C 0.011 3.989 10 C -0.120 4.120 11 H 0.137 0.863 12 C -0.175 4.175 13 C 0.032 3.968 14 H 0.097 0.903 15 N -0.367 5.367 16 C -0.373 4.373 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.193 4.193 25 S 2.733 3.267 26 N -0.920 5.920 27 O -0.971 6.971 28 O -0.951 6.951 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.253 0.747 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -12.068 -20.475 -17.443 29.481 hybrid contribution 0.014 1.187 1.364 1.809 sum -12.054 -19.287 -16.079 27.854 Atomic orbital electron populations 1.21730 0.94465 1.02458 1.02284 1.22262 0.97967 0.94958 1.05547 1.21362 0.85855 0.99431 1.06073 1.30613 1.10173 1.05062 1.25776 0.78819 1.19514 0.81425 0.89080 0.79099 1.90744 1.56905 1.45886 1.49169 1.45988 1.21179 1.10732 1.57706 1.21379 0.94731 0.82033 1.00801 1.22550 0.95606 0.98866 0.94980 0.86304 1.23325 1.00348 0.96364 0.97479 1.21953 0.96712 0.89120 0.89017 0.90312 1.42625 1.46831 1.24357 1.22886 1.19721 1.14811 1.04391 0.98390 0.90389 1.25579 1.01580 0.97363 1.02626 1.69816 1.40966 1.12456 1.39028 0.85156 0.77812 0.77731 0.79175 1.21477 1.22451 1.19306 1.23785 1.00115 1.00396 0.95052 1.03890 0.73496 0.73816 0.75485 1.52827 1.70611 1.46532 1.22031 1.93616 1.32077 1.86382 1.85016 1.93554 1.77130 1.41289 1.83150 0.92203 0.91856 0.92444 0.88391 0.90285 0.89241 0.89263 0.74607 0.92223 0.90767 0.91122 0.90439 0.79581 0.94109 0.91411 0.92209 0.74659 0.73871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.17 -1.93 5.65 30.60 0.17 -1.75 16 3 C -0.09 -1.04 4.14 30.60 0.13 -0.91 16 4 C -0.61 -7.39 2.75 29.85 0.08 -7.31 16 5 H 0.19 1.06 8.14 -2.39 -0.02 1.04 16 6 C 0.53 9.79 6.60 87.66 0.58 10.37 16 7 O -0.55 -13.23 15.66 -3.03 -0.05 -13.28 16 8 N -0.70 -12.82 5.56 -463.07 -2.57 -15.39 16 9 C 0.13 3.00 5.52 86.38 0.48 3.47 16 10 C -0.10 -2.34 3.76 -10.18 -0.04 -2.38 16 11 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 12 C -0.14 -3.99 7.39 31.12 0.23 -3.76 16 13 C 0.14 5.20 4.48 45.52 0.20 5.41 16 14 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 15 N -0.73 -36.11 5.40 -320.46 -1.73 -37.84 16 16 C -0.24 -13.20 9.97 84.03 0.84 -12.37 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -59.56 13.06 21.65 0.28 -59.27 16 20 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C -0.15 -4.61 7.44 31.21 0.23 -4.38 16 25 S 2.64 38.90 5.46 -56.49 -0.31 38.59 16 26 N -1.24 -14.17 9.13 37.02 0.34 -13.84 16 27 O -0.98 -20.90 18.01 -127.65 -2.30 -23.20 16 28 O -0.96 -17.50 14.89 -127.65 -1.90 -19.41 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 1.33 4.90 -2.39 -0.01 1.32 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 0.96 6.97 -2.39 -0.02 0.94 16 36 H 0.42 5.50 8.47 -92.71 -0.79 4.72 16 37 H 0.06 1.55 7.85 -2.38 -0.02 1.53 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.24 8.08 -2.39 -0.02 2.23 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.37 20.00 7.92 -92.70 -0.73 19.26 16 42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 2.05 7.91 -2.39 -0.02 2.03 16 45 H 0.42 4.40 7.18 -96.74 -0.69 3.70 16 46 H 0.43 3.47 8.96 -96.74 -0.87 2.61 16 Total: -1.00 -75.87 385.06 -4.18 -80.05 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -2.05 Total: 34.30 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.08 Total: -18.57 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -3.68 Total: -126.34 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -4.25 Total: -55.89 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 38.90 SS G_CDS: -0.31 Total: 38.59 kcal Total: -75.87 -4.18 -80.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688908257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.024 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds