Wall clock time and date at job start Tue Mar 31 2020 17:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 N 1.46500 * 109.47036 * 240.00218 * 2 1 3 5 5 S 1.65600 * 119.99736 * 171.75771 * 4 2 1 6 6 C 1.81401 * 104.45260 * 64.08157 * 5 4 2 7 7 O 1.42101 * 104.27541 * 180.15284 * 5 4 2 8 8 O 1.42096 * 104.27783 * 308.00608 * 5 4 2 9 9 C 1.50703 * 109.47252 * 119.99715 * 2 1 3 10 10 O 1.21277 * 120.00313 * 261.58412 * 9 2 1 11 11 N 1.34775 * 119.99684 * 81.59164 * 9 2 1 12 12 C 1.47026 * 125.64793 * 354.80021 * 11 9 2 13 13 C 1.54330 * 107.26786 * 181.08506 * 12 11 9 14 14 C 1.55150 * 102.94278 * 22.19481 * 13 12 11 15 15 H 1.09001 * 111.00698 * 82.57543 * 14 13 12 16 16 C 1.53001 * 111.00433 * 206.42494 * 14 13 12 17 17 N 1.46507 * 109.46783 * 287.19866 * 16 14 13 18 18 C 1.36943 * 119.99645 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99487 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00212 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99649 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47230 * 120.00076 * 22 20 18 25 25 H 1.48501 * 109.47274 * 240.00144 * 22 20 18 26 26 C 1.47424 * 125.64852 * 174.83019 * 11 9 2 27 27 H 1.09001 * 109.46509 * 299.99678 * 1 2 3 28 28 H 1.09000 * 109.47378 * 59.99965 * 1 2 3 29 29 H 1.09000 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47672 * 171.87791 * 3 2 1 31 31 H 1.08999 * 109.46913 * 291.88492 * 3 2 1 32 32 H 1.09006 * 109.47276 * 51.87318 * 3 2 1 33 33 H 0.96993 * 120.00320 * 351.74965 * 4 2 1 34 34 H 1.09004 * 109.47104 * 57.84588 * 6 5 4 35 35 H 1.09006 * 109.46894 * 177.84365 * 6 5 4 36 36 H 1.08996 * 109.47264 * 297.84359 * 6 5 4 37 37 H 1.08997 * 109.88514 * 300.49906 * 12 11 9 38 38 H 1.09000 * 109.88130 * 61.67399 * 12 11 9 39 39 H 1.08997 * 110.71802 * 140.56081 * 13 12 11 40 40 H 1.08997 * 110.71567 * 263.65035 * 13 12 11 41 41 H 1.09001 * 109.47061 * 47.19256 * 16 14 13 42 42 H 1.08997 * 109.47621 * 167.19993 * 16 14 13 43 43 H 0.96994 * 120.00241 * 359.97438 * 17 16 14 44 44 H 0.97006 * 120.00158 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36876 * 274.68719 * 26 11 9 46 46 H 1.09003 * 110.36723 * 37.00871 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 3.6325 -0.6662 -1.5653 6 6 4.4239 -1.5516 -0.1940 7 8 3.7286 -1.4193 -2.7665 8 8 3.9782 0.7117 -1.5349 9 6 2.0324 -0.7104 1.2305 10 8 2.3795 -0.0708 2.2007 11 7 2.0961 -2.0564 1.2527 12 6 1.6101 -2.9548 0.1951 13 6 1.8687 -4.4010 0.6679 14 6 1.9693 -4.2501 2.2087 15 1 0.9796 -4.2344 2.6653 16 6 2.8321 -5.3596 2.8132 17 7 2.0952 -6.6254 2.7776 18 6 2.6709 -7.7668 3.2686 19 1 3.6682 -7.7340 3.6817 20 6 1.9725 -8.9660 3.2353 21 7 0.7573 -9.0060 2.7314 22 14 2.7580 -10.5231 3.9044 23 1 4.1191 -10.2128 4.4105 24 1 1.9283 -11.0590 5.0134 25 1 2.8508 -11.5354 2.8218 26 6 2.6641 -2.8719 2.3416 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1203 1.4460 0.1452 31 1 1.8000 1.9127 -0.9536 32 1 1.5630 1.9966 0.8084 33 1 1.3963 -1.1621 -1.7719 34 1 4.0056 -2.5554 -0.1200 35 1 5.4968 -1.6174 -0.3751 36 1 4.2449 -1.0139 0.7371 37 1 0.5423 -2.8010 0.0398 38 1 2.1528 -2.7649 -0.7309 39 1 1.0356 -5.0498 0.3975 40 1 2.8021 -4.7811 0.2530 41 1 3.7524 -5.4587 2.2375 42 1 3.0747 -5.1094 3.8460 43 1 1.1994 -6.6548 2.4069 44 1 0.2691 -9.8440 2.7085 45 1 3.7416 -2.9764 2.2149 46 1 2.4367 -2.4242 3.3091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690743068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:43 Heat of formation + Delta-G solvation = -73.368177 kcal Electronic energy + Delta-G solvation = -28786.559459 eV Core-core repulsion = 24839.679672 eV Total energy + Delta-G solvation = -3946.879787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97717 -38.27233 -37.40390 -36.69874 -36.22855 -34.80206 -32.33837 -31.07949 -30.38470 -29.73785 -29.21906 -27.68642 -25.93322 -24.05361 -22.50259 -22.06202 -20.25112 -20.13916 -19.42212 -18.13818 -17.70103 -17.15212 -16.65546 -16.44191 -16.11513 -15.70729 -15.06487 -14.92480 -14.45356 -14.02156 -13.87257 -13.62099 -13.47181 -13.30070 -13.21816 -13.09737 -12.97592 -12.84597 -12.57207 -12.52654 -12.43184 -12.29911 -12.13047 -12.04604 -11.74245 -11.43651 -11.27649 -11.10556 -10.99190 -10.87312 -10.76107 -10.51885 -10.49496 -10.07532 -9.78819 -9.59572 -8.95975 -8.86133 -7.01056 -5.84470 -3.13492 -0.08373 1.98644 2.44147 2.64172 3.38642 3.41393 3.44844 3.46669 3.85229 3.99931 4.27878 4.43686 4.49092 4.52249 4.54335 4.62785 4.71378 4.84523 4.87952 5.10577 5.18570 5.24349 5.34141 5.39201 5.50028 5.53608 5.53950 5.65007 5.70946 5.72577 5.82073 5.88718 5.99422 6.01755 6.10407 6.25910 6.26572 6.47246 6.60702 6.71250 7.20762 7.63714 7.78102 8.34189 9.46054 10.01825 10.36486 11.38313 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002908 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.942881 B = 9627.242805 C =10043.072986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.165 3.835 3 C -0.157 4.157 4 N -1.109 6.109 5 S 2.605 3.395 6 C -0.678 4.678 7 O -0.955 6.955 8 O -0.949 6.949 9 C 0.506 3.494 10 O -0.525 6.525 11 N -0.611 5.611 12 C 0.092 3.908 13 C -0.126 4.126 14 C -0.104 4.104 15 H 0.087 0.913 16 C 0.164 3.836 17 N -0.731 5.731 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.105 3.895 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.423 0.577 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.074 0.926 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 19.843 -8.820 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.073 3.927 3 C -0.216 4.216 4 N -0.870 5.870 5 S 2.698 3.302 6 C -0.829 4.829 7 O -0.945 6.945 8 O -0.939 6.939 9 C 0.292 3.708 10 O -0.400 6.400 11 N -0.346 5.346 12 C -0.031 4.031 13 C -0.164 4.164 14 C -0.124 4.124 15 H 0.106 0.894 16 C 0.036 3.964 17 N -0.375 5.375 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.017 4.017 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.259 0.741 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.398 20.658 -8.863 22.523 hybrid contribution -0.285 -1.720 0.647 1.860 sum 1.113 18.939 -8.215 20.674 Atomic orbital electron populations 1.22029 0.90384 1.03812 1.04330 1.20450 0.97959 0.92990 0.81282 1.22368 1.03858 0.91702 1.03633 1.55906 1.27355 1.68079 1.35675 1.05017 0.73782 0.75579 0.75821 1.30825 1.14647 1.16367 1.21027 1.93638 1.85101 1.73768 1.42015 1.93636 1.82766 1.30734 1.86779 1.20835 0.78909 0.81149 0.89906 1.90758 1.48303 1.65098 1.35843 1.48679 1.59730 1.04775 1.21367 1.22459 0.99864 0.90539 0.90249 1.22752 1.04133 0.93684 0.95852 1.22569 1.00779 0.93448 0.95560 0.89445 1.20553 0.93413 0.85391 0.97059 1.42302 1.17740 1.03116 1.74339 1.19258 0.98894 0.86555 1.32512 0.91113 1.24735 0.96512 0.97877 1.01725 1.69658 1.11401 1.25924 1.51124 0.86120 0.78307 0.83573 0.78189 1.20541 1.21843 1.21821 1.22411 0.97989 0.90437 0.90871 0.90160 0.90109 0.91039 0.89701 0.90303 0.90468 0.74092 0.84347 0.84949 0.85236 0.90551 0.92083 0.89064 0.90086 0.95979 0.95991 0.78234 0.93517 0.90826 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.55 37.16 0.32 -0.60 16 2 C 0.17 1.39 0.78 -132.97 -0.10 1.28 16 3 C -0.16 -1.45 6.64 37.16 0.25 -1.20 16 4 N -1.11 -8.17 3.07 -0.40 0.00 -8.17 16 5 S 2.61 24.39 5.54 -107.50 -0.60 23.80 16 6 C -0.68 -5.72 8.60 101.05 0.87 -4.85 16 7 O -0.95 -11.54 18.08 -57.54 -1.04 -12.58 16 8 O -0.95 -11.22 14.53 -57.54 -0.84 -12.06 16 9 C 0.51 5.57 4.07 -10.98 -0.04 5.52 16 10 O -0.52 -7.49 16.36 5.56 0.09 -7.40 16 11 N -0.61 -6.32 1.70 -170.51 -0.29 -6.61 16 12 C 0.09 0.82 4.59 -3.06 -0.01 0.80 16 13 C -0.13 -1.48 6.37 -24.90 -0.16 -1.64 16 14 C -0.10 -1.42 3.05 -88.47 -0.27 -1.69 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.16 2.94 5.71 -4.04 -0.02 2.92 16 17 N -0.73 -17.18 5.55 -59.90 -0.33 -17.52 16 18 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.11 1.25 6.15 -2.53 -0.02 1.23 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 6.54 -51.93 -0.34 0.06 16 30 H 0.08 0.92 6.15 -51.93 -0.32 0.60 16 31 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.42 2.18 8.05 -34.47 -0.28 1.90 16 34 H 0.14 1.13 5.50 -51.92 -0.29 0.85 16 35 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.13 1.22 5.96 -51.93 -0.31 0.91 16 37 H 0.08 0.56 6.65 -51.93 -0.35 0.22 16 38 H 0.06 0.45 4.56 -51.93 -0.24 0.21 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 41 H 0.02 0.40 7.97 -51.93 -0.41 -0.02 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 9.43 7.67 -40.82 -0.31 9.12 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 46 H 0.08 1.05 7.99 -51.93 -0.41 0.63 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -34.83 362.78 -8.28 -43.10 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.00 Total: 6.88 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 0.56 Total: -5.27 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.10 Total: -58.74 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.79 Total: -32.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 24.39 SS G_CDS: -0.60 Total: 23.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.83 -8.28 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690743068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.264 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds